Tjap011344.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- MBD-R2
- Assembly
- GCA_033459515.1
- Location
- CM065941.1:12275859-12288677[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8 4.8e+03 -2.5 0.0 22 41 368 387 362 388 0.83 2 3 0.81 2.2e+03 -1.4 0.0 25 48 403 425 398 428 0.84 3 3 1.1e-16 3.1e-13 49.4 0.0 5 69 780 843 776 847 0.93
Sequence Information
- Coding Sequence
- ATGGCTGTAAAACAATGTTGCATAGAGAACTGTAAGTCCTGCTCATCAAGAAAGGAAGACAATGGTGTCACATATCACAAATTTCCCAAAGATCCAGCCTTACGTAACATTTGGAAGTCAATAACATGTTGTAGTGATTCCGATTTGCCGAATTATGTGTGTTCAaggcatttttataaaaatgattttcaaagTTACAAGGACTCTAAATACATACTGAAGTCAGatgCAGTGCCTTCAATTTTTCCATGGACTATGACAAAAATTGTTGACACTACAAGGATGGAGACCATGAATAGCGTATTAGAAAATGCTACGGCAAGCACATCAGATGCTCCAGACAAATTAAATACTTCTGATAGCAGCAAAGAATCAGAAGAGAATTtggaagcaataaaaaaattcattgaAGACCAAGAGAAAGAATTTCAGGAGAAGAATGATGCAGCTAACATTGTTAACAAGGAAGATATTGATAATGAACATGCAAATAAAgatgtaaaaattgaaaatgcTGAAGAAACTATGGCAGTTGCATCCAGTGTTATGGATATGATTCTTAGTGAGTCGGAAGCAAAGATAGAGAAAAAACACGAAGTTGCTCCTGCACCTAAGTATAGCATTAGTCCTGCTGATAAGTTCACAAGTGGTAGCATTTCTCTATCTGTTGGTTCGAGAATTGAAGCCAAGGATTTTAGTGAAGAATGGCATCCAGCAGAGATTGTAGAGGTTGACTTTGACGAAATGGAAGTCTTGGTTCGATATGAACCGATTAACAAAATTGTTTCCAGACACGACGAATGGATAAGTGTAAGTAGTCCACGCCTGCGGCCTTTAAGCGGCACTACTCCCAAAGTTGAAGTTAAAGAAGAAACCAAGATGCCAGAGAAGGAAGTGCAAGTCAAAGAGGAGGTTAAAGAAGTAAAACAAGAAGAGAAGGCAAAAGTCACGTTTGCCGTGGGAGAGAGATGTCTGGCGCGGTGGAGGGACAACAGACGGTTCATGGCCACTGTTCAGAAGGAATTGGAGAATGGCagctatgaaataatatttgatgacaACTTCAAATGGAAATGTAGCGTGTCCAGGCTTTATAAATGGAAACCAACGGGCAAACCTGAGCTAACTGTAGACACAACTTTAAATTCTCCTACGGGGTCCGCATCGCCCGTACAATGGGGTGGTCCCAGTACCGTCGACAATGCGGGCAATAAGTCAGCATTCCACACACACCTCTTCGATCCAACACGAGATTACTTGAGCTCCAAAAGTGAGCGTAGAGAGATGAAGAGAAAATTGAACATAAAGGAGATATTCAACATTGGACAAAAGAGACAAAAAACTAAACCAGATAAAGAGGTTACGGTGACGAAACGCCCAAGGATTATAAGGAGGTCTACTAAGGTCAAACCTAAAGCAGTAGTCAAGGTCGAAGAgaatgttgaaattaaaaaggATGAACCTGATGCTGTTGCGTCCTTCATTGGCACAGATATAAAACAAGAAACCATTGTATCGGAAATAAGGATCGATGTCGAACCAGAAATAAAACTCGAAAATAACATTGGTTTAAATGGAGAAGATTTTGTCGAAGATGTTAAAAAACCCGAGATAGCGGACACACAGGTAGCAGATGCTTTTAAAATGGATGAATATAAAGCTGACTTAGACCCTGTACACGAGGAAGATGTGAAGCTTGAGAAATTTGAGAAACAAGATGACGATAAACACGAAGAAGTAATTGATAGGATGAAAGAAGTCATCAGTAAACTTGAAGTTGGGCTTAATGAAACCGAAAAAGTTAATTCCCCCAAAGTAGAACACAAGGAAGAAACTCCTATACCTGTCAAAGTTGATACAGAAATTAAAGAAGCAGAAATTCCAAAAACTAAAGAAGCAGAAATACCAAAAACTATAGAAGCAGAAATACCAAAATCTAAAGAAGCAGAAATACCAAAAACTAAAGAGGCCGATGAAAACGTATTCGTAGACGTAGATGGTCTTGATACTGTGGAACCACCAAAACCGCCTAAAAAACTGTCAAAGATGAAGAAAGGCAAAAAGATTAGATTACTGCAGGAGAAAAAGGTAAAGAAACAGGTAGAGATAGTGAAGAAAGAGATGGAAGAGATGCGGAAACAGGTGGAGGAAATGAGAAAGCAGATGTTGCGGACGCAAGAGCTCTCGAAGGGCCAGGAGATGCCAGAGAGTTTCTTGTTGCCGGGAGAATGGTGCTGCAGGTGGTTGAACGGGCAACCTGTAGGGACGGTGAGCGAAATTGTATGCGAGCCGCGAACGGACAGCGAGGGGAAACAGGGATTACCACGGAGGAGTGTTCAGGTGGAAGATAAACGACTACCTCCAGGTTGGACGAAACACATGGTTCGGAGGAGTTTGGGACATTCTGCAGGAAAATGGGATGTTGTACTTGTTAGTCCAGAAAACCGTCGCTTCCACACCAAGACAGACATGCGCAACTACTTGGAAAATAACCCTGATGAAGCACTAAAACCGTACGAATGCGCGTTATTGGATTTCGGAGTGCATTTGAAATTATCTCGGCGTATGGGTTGGATCTCAACTACACCAGGGGGCGTTGCTGACGGGCCCTCAGTCTCTCCTAGCATATTGAGCTGCACCTCGCCTCTGATTAAGAAGAGAAAGAAATCGGAGAAGAAAAGGGAAAAGAAAAAGTTGTCTTTGAAAATGAAGATTGTTGTCCCTACTGAAAGTGTTGAACACGAGCCGATCAATATAGATACCACATCTGACACGGTGCATACGCCTGAACCACCCCTCAACACAATGACTTTAGAAGACGGATACGTCTACGTCGGCTCGCTCAAAGTTCAAATAATCGAGAATCTGCTCCGATGTCCAGCGGAAGGTTGCTTCAAGAATTTCCGAAACAACACGCTTTTACAGATGCATATAAAACATTACCATAGAGAGTTAAGAGAAATGTTAGGAGCTACTCCGAAGGTCCTGGACTTGGCGTACGCCAGGACGATGCCTGTGGATCCTGATCCGCCGAAGCAAGTCGAATCAAAGATCATAAAGGTCAAAATACCAAAACCACCAAAACGCGAAGAGTCGAAACGAATAGAACTAGAGCCTTTGGAGATCAAACCTGATTTAATACCTGATACAGCTCCCAAAACACCAGTGAGCCATGAAGGAGATAGCATTCCGAAACCTCAAGATTCTCCCAAATTGCGCGATGCATTGATTAACAAGCCAGTTAAAAGGCCACGAGTTTTACTTCCAGTCAGAAGACCAGACTCTAACCCAGAACCCACTAATATTGAAGATTTTGATTCGGAGTTACCCGTAATACCACCAGAGACCAGCATGATAGATGTATTAGACTTCGAAACGGCGATATCGACGCACACCGTGACTAAACCGTTTTTGGAGAAGCGGAAGAAAGGGGACAAAAAACGGAAGTCGTTGACTCTGATGCCTCAGAAGTTGAGCGATGATGAGGAGTGGTTCGCGGCGACTTCGGATGTGGAGACGAGGTCAAGTTTCCCGCGGTCAGGTACGCCTGACTCGAAGATGGCTGAGGCGCCGATCATGCAGGAGGTAGGCGCTATGTCTGCGGAGTCCAATGAGGATCAGAAGGATTCTCACAAGTACATGTATAATGAGAACGGCGAGCGCGTGAAGATCGTGCACATGAAGCGCGAGGAGATCATCAACTGCCACTGCGGCTACCGCGAGGAGGACGGGCTCATGGTGCAGTGCGAGCTGTGTCTGTGCTGGCAGCACGCGCTCTGCCACAACATACACAGCGAGGCGCAGGTCCCAGAGAAGTACACATGCAGTATATGCCTGAACCCGCGGCGCGGTCGTCGCTCGCAGCGGTTCCTGCACGACCAGGACCGACTGTACGAGGGCCTGCTGCCGGGGGCGAAGCCCTGCGACATGCTGCGGCGCTCGCACGAGCTGTCTGGCAACCTGCTGCGCATACAGGACGCACTGCACGCTCTCAGAGTCAAGTGCTATGTGGCTAGCAAAAAAGACCACCCGAAGCTATACCTGTGGGCTAAAGACTGGGAGCACGCGGAGCTGTCGTACACTCAAGAGAAGCTAAACTCCGACTACACCGATCTCAACATCATGATCAACACCGTCGGCAAGGAGAACATGCCCATCAAGCCCGAGGACATCAAGGATATGCAGTTGGACATCAGGGGCACGCTGTGTGAAGACCAGGATTCTGATAGGTTCTCGCAGCGGACGGATAGTCAACTGAGCACCGTGTTGTTGAACAACTTGCTGTCGAGTCCGGGCGGTGCGTCACTTGATCTGCCTATAAGCACCTCTGAGTTGGAGACGCTTGCTAAATCTGTTCAAGAGCAAGTGTGCCTGGGCGGGGCGTCGTGCGCGCCGCAGCCCGAGGCGGCCATCGAGAACGGCGCGTGCCGCGTGCGCCTGCTGCGCCACATCCAGCGCTGCCACGCGCTCGTCGACGCGCGGCTCGACTCCATCGAGGCGCAGGTGGCAGaaTTGGAATCTCAAGACCCGTCGTTCGAAGACGACGAGACGCCCGATTTCTTCCCGCGAACCAAACACACTGTGCAGATGTTGCTTCGGGATCTCGACACTATGGAGGAGTTGGGAGTCATCACCTAA
- Protein Sequence
- MAVKQCCIENCKSCSSRKEDNGVTYHKFPKDPALRNIWKSITCCSDSDLPNYVCSRHFYKNDFQSYKDSKYILKSDAVPSIFPWTMTKIVDTTRMETMNSVLENATASTSDAPDKLNTSDSSKESEENLEAIKKFIEDQEKEFQEKNDAANIVNKEDIDNEHANKDVKIENAEETMAVASSVMDMILSESEAKIEKKHEVAPAPKYSISPADKFTSGSISLSVGSRIEAKDFSEEWHPAEIVEVDFDEMEVLVRYEPINKIVSRHDEWISVSSPRLRPLSGTTPKVEVKEETKMPEKEVQVKEEVKEVKQEEKAKVTFAVGERCLARWRDNRRFMATVQKELENGSYEIIFDDNFKWKCSVSRLYKWKPTGKPELTVDTTLNSPTGSASPVQWGGPSTVDNAGNKSAFHTHLFDPTRDYLSSKSERREMKRKLNIKEIFNIGQKRQKTKPDKEVTVTKRPRIIRRSTKVKPKAVVKVEENVEIKKDEPDAVASFIGTDIKQETIVSEIRIDVEPEIKLENNIGLNGEDFVEDVKKPEIADTQVADAFKMDEYKADLDPVHEEDVKLEKFEKQDDDKHEEVIDRMKEVISKLEVGLNETEKVNSPKVEHKEETPIPVKVDTEIKEAEIPKTKEAEIPKTIEAEIPKSKEAEIPKTKEADENVFVDVDGLDTVEPPKPPKKLSKMKKGKKIRLLQEKKVKKQVEIVKKEMEEMRKQVEEMRKQMLRTQELSKGQEMPESFLLPGEWCCRWLNGQPVGTVSEIVCEPRTDSEGKQGLPRRSVQVEDKRLPPGWTKHMVRRSLGHSAGKWDVVLVSPENRRFHTKTDMRNYLENNPDEALKPYECALLDFGVHLKLSRRMGWISTTPGGVADGPSVSPSILSCTSPLIKKRKKSEKKREKKKLSLKMKIVVPTESVEHEPINIDTTSDTVHTPEPPLNTMTLEDGYVYVGSLKVQIIENLLRCPAEGCFKNFRNNTLLQMHIKHYHRELREMLGATPKVLDLAYARTMPVDPDPPKQVESKIIKVKIPKPPKREESKRIELEPLEIKPDLIPDTAPKTPVSHEGDSIPKPQDSPKLRDALINKPVKRPRVLLPVRRPDSNPEPTNIEDFDSELPVIPPETSMIDVLDFETAISTHTVTKPFLEKRKKGDKKRKSLTLMPQKLSDDEEWFAATSDVETRSSFPRSGTPDSKMAEAPIMQEVGAMSAESNEDQKDSHKYMYNENGERVKIVHMKREEIINCHCGYREEDGLMVQCELCLCWQHALCHNIHSEAQVPEKYTCSICLNPRRGRRSQRFLHDQDRLYEGLLPGAKPCDMLRRSHELSGNLLRIQDALHALRVKCYVASKKDHPKLYLWAKDWEHAELSYTQEKLNSDYTDLNIMINTVGKENMPIKPEDIKDMQLDIRGTLCEDQDSDRFSQRTDSQLSTVLLNNLLSSPGGASLDLPISTSELETLAKSVQEQVCLGGASCAPQPEAAIENGACRVRLLRHIQRCHALVDARLDSIEAQVAELESQDPSFEDDETPDFFPRTKHTVQMLLRDLDTMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00428145;
- 90% Identity
- iTF_00428145;
- 80% Identity
- iTF_01430007;