Dtri006652.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dasysyrphus tricinctus
Gene Symbol
Rfx2
Assembly
GCA_963921185.1
Location
OY992530.1:80313096-80343934[-]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.7e-38 1.8e-33 117.1 0.2 3 78 177 252 175 253 0.97
2 2 2 5.4e+04 -3.1 0.0 25 42 615 633 613 637 0.76

Sequence Information

Coding Sequence
ATGGCGTTCCCGGCGGAGCATCAATTTGCCAAGATATTGGTTTCCACACAAGACACCGTCGGTGGTCAGAATTCCTATCAAGTGCAATATGTGGACACCGAGTTATACCACAGTAACTCCAGTCAGTCTCAAATGACATATCCTTTTTGTCCCGTCGGTGATTATCAGACAACAAGCCAATCCTACTATTCAACTACGGCCAACTACTCTACAACGAATACTCCCCCGTCGCATGCATCCGGGTTGCCTTATTTAGTTCCTGTCGAGGAGAATCTTCTCCTAAACTCCTCATCACAAAGCCGCGAATCGCCACCGAGCTTATCCGAAGTATCTTACTTGCAGGAAGCACAAACACCAACCTCTACAACTCCATCAATTGCTGGTTCCTGTGGGACCGGAAGTGGTGGCGGCGGTGGAAGTGCCACAGGCGGTGGAAGCAATGGAGGTGTTGGTGGGGGTGTGATTGTCAGTGGGGGACTCAACGTTGGAGATTCAAATAACTTGGCAAATGCCAACAAGATTGCCTCGGCAACGATAAAATGGCTTACACGTAACTACGAAACAGCGGAAGGAGTAAGTCTGCCCCGTTCAACCCTCTACAATCACTACATGCACCATTGCAACGAAAACAAATCGGAACCAGTAAATGCTGCAAGCTTCGGCAAGTTAATTCGTTCGGTTTTCTCCGGATTGCGAACTCGTCGGTTGGGTACTCGTGGAAATTCCAAGTATCACTACTATGGCATTCGTATAAAGCCCGGATCTACCCTATCACACACTATGGAAGATAAACCGGGACAGCAGTTCTCCGGCAAACATCCGAACGGTGGTAATCTTAACGGGATTGGTGGTGCTGGTGGCAACAATCTCGGTGGGGGAGGAAATTCGGGCAAAGGCATGAAAAAACACAGTGTTAAGCCCGAGACATATGAAGCTTGCTCCCAGTATTTGGGTGATGGTTCTGGTTGTATCCCTATATTTCCTCATATTGAGCTCGATAATACATTTAACAACGAACTTACTCTGGATGATGTTGAAACCTTTCGTTCCATGTATCGAGAGCACTGTGAATCATTTCTTGATGCTGTTTTGAATCTcgaattcggtactattgaaTATCTATGGCGTGATTTTTGGCGTTCATCGGACAACAACAATTTGGATGAATGTGAAGAAGAAAAATACTTatccaaaacaaaactttatttGCTTTGTCATTGCAATGGAGTACAAAAGTTTATTAAACAGGTTGATTACCAATTCTATCAGAATATGGTAGATGTCCTCATTCCAGACGTACTGCGTTCCATACCAAACTCTCTCACCCAAGCCATTCGtaattttgccaaaaatttgGAAATCTGGCTTTGCGAGGCAATGGTTGGGGCCCCAGAACGTGTGGTCCAGATCAAATCTGCAGCTATATCGGCTTTTTGTCAAACCCTAAGACGCTATACATCTTTGAACCATCTAGCTCAGGCTGCACGTGCAGTGCTTCAAAATAACTCTCAAATTGCCCAGATGTTAAATGATCTTAACCGTGTTGACTTCCACAATGTCCAAGAGCAGGCAGCTTGGGTATGCCAATGTGACACTTCTATTGTGCAACGTCTTGAGAATGATTTCAAAACAgctttacaacaacaaaatactcTTGAACAATGGGCAAGTTGGCTACGTCTAGTAGTTGATTCAGCTTTAGAAGAATATCGGGACAAGCCCAATTACGCCAAAGCTGCACGCCAATTTCTACTCAAATGGAGTTTTTATAGTTCAATGGTTATACGTGATTTGACTCTACGATCGGCATCAAGTTTTGGTAGCTTCCATTTGATTCGTTTACTCTACGATGAATATATGTTTTTCTTGGTTGAACACAAAGTTGCTGAAGTTCTTCAGAAGACCGCAATCGCTGTGATTAGCGATAGAATGCAAAAAGATACTGATTTCGAGTTTGATTACCAACTGGCTTTCATTGATTCCGATACCAATGTCGCTAAACGAATGAAGCACGAATGa
Protein Sequence
MAFPAEHQFAKILVSTQDTVGGQNSYQVQYVDTELYHSNSSQSQMTYPFCPVGDYQTTSQSYYSTTANYSTTNTPPSHASGLPYLVPVEENLLLNSSSQSRESPPSLSEVSYLQEAQTPTSTTPSIAGSCGTGSGGGGGSATGGGSNGGVGGGVIVSGGLNVGDSNNLANANKIASATIKWLTRNYETAEGVSLPRSTLYNHYMHHCNENKSEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPGSTLSHTMEDKPGQQFSGKHPNGGNLNGIGGAGGNNLGGGGNSGKGMKKHSVKPETYEACSQYLGDGSGCIPIFPHIELDNTFNNELTLDDVETFRSMYREHCESFLDAVLNLEFGTIEYLWRDFWRSSDNNNLDECEEEKYLSKTKLYLLCHCNGVQKFIKQVDYQFYQNMVDVLIPDVLRSIPNSLTQAIRNFAKNLEIWLCEAMVGAPERVVQIKSAAISAFCQTLRRYTSLNHLAQAARAVLQNNSQIAQMLNDLNRVDFHNVQEQAAWVCQCDTSIVQRLENDFKTALQQQNTLEQWASWLRLVVDSALEEYRDKPNYAKAARQFLLKWSFYSSMVIRDLTLRSASSFGSFHLIRLLYDEYMFFLVEHKVAEVLQKTAIAVISDRMQKDTDFEFDYQLAFIDSDTNVAKRMKHE