Bscu035477.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- Rfx2
- Assembly
- GCA_949775065.1
- Location
- OX459114.1:70403815-70415316[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-38 1.2e-33 117.1 0.2 3 78 157 232 155 233 0.97 2 2 1.8 5.1e+04 -3.5 0.0 25 42 595 613 593 617 0.76
Sequence Information
- Coding Sequence
- ATGTtttccACACAGGACACCGTCGGTGGTCAAAATTCCTACCAAGTGCAATATGTGGACACAGAACTGTACCACAGTAACTCCAGTCAGTCTCAGATGACATATCCTTTTTGCCCCGTTGGAGATTATCAGACCACTAGCCAATCATATTACTCAGCAACGGGTAACTACACAGCTACGAACACTCCACAATCGCATGCGTCCGGGTTGCCTTATTTAGTACCTGGTGAAGAGAATCTGCTCCTTAACTCCTCATCACAAAGTCGCGACTCACCGCCGAGTTTACCCGAAGTGTCTTATTTGCAAGATGCACAAACACCAACATCTACCACGCCATCGACAGCTGGTTCTACTGGAACCGGTAGTGGTGCTGGCACGGGTGGTGTTGTCAGTGGTGGTGGAAATGGTAGTGGAATACTCAACGTTGGGGATACAAATAGTCTAGCGAATGCCAACAAGATTGCCTCGGCAACGATAAAGTGGCTTACACGTAACTACGAAACAGCAGAGGGAGTAAGTCTGCCCCGTTCGACCCTATATAATCACTACATGCATCATTGCAACGAGAACAAATCGGAGCCAGTCAATGCTGCAAGCTTTGGGAAGTTAATTCGCTCGGTGTTTTCGGGATTGCGAACCCGTCGGCTGGGCACTCGTGGAAATTCAAAGTATCACTACTATGGTATTCGTATAAAACCGGGATCCACTCTTTCGCATACAATGGAGGATAAGCCAGGTCAACCATTTCCTGGACAAAATCCAAACGGTGGGACACTTAACGGTCTGGCTGGTGGGAGTAGTGGAACCCCACTTGGTGGCGCAGCTATAAGCAAAGGCATGAAAAAACATGGTGTCAAACCGGAAACATACGAAGCCTGCTCACAGTATCTTGGAGATGGTTCAAATGGCATTCCGCTCTTTCCACACATCGATCTCGATAATACGTACAACAACGAACTCACCCTGGAAGATGTTGAAACATTCCGTTCTATGTACCGAGAACATTGTGAATCGTTTCTGGATGCCGTACTAAATCTTGAATTCAGTACAATCGAATACCTTTGGCGTGACTTTTGGCGCTCCTCTGACAATAACAACTTGGACGAATgtgaagaagaaaaatatttgtcCAAAACGAAGCTGTACTTGCTTTGTCATTGCAGTGGAGTTCAAAAGTTCATCAAGCAAGTCGATTATCAATTCTATCAAAATATGGTCGATGTACTCATTCCAGACGTACTGCGCTCCATTCCAAACTCGCTGACTCAAGCTATTCGCAACTTTGCCAAAAATCTAGAAATTTGGTTATGTGAATCAATGGTTGGGGTGCCAGCGTTGGTGATTCAAATTAAATCATCGGCTGTATCAGCTTTTTGTCAAACCCTACGACGCTATACTTCCCTTAATCATCTAGCTCAGGCTGCACGTGCAGTCCTTCAAAATAATTCTCAAATTGCCCAGATGCTTATCGATCTGAATCGTGTAGATTTCCATAATGTTCAGGAACAAGCCGCCTGGGTATGTCAGTGTGACACTTCAATAGTACAGCGCCTTGAAAATGATTTTAAGGCTGCCCTGCAACAACAAAACACTTTGGAGCAGTGGGCAAGTTGGCTTCGTTTGGTAGTGGACTCCGCCTTAGAAGAGTATCGTGACAAACCTAACTACGCCAAAGCTGCACGCCAATTCTTACTGAAATGGAGTTTCTATAGTTCCATGGTTATCCGGGATTTAACTCTACGATCAGCGTCTAGTTTTGGCAGTTTTCACTTGATTCGTTTGCTCTATGATGAATATATGTTCTTTCTGGTCGAACACAAAGTGGCCGAAGCTCTTCAGAAGACTGCAATCGCAGTGATCAGCGAAAGAATGCAAAAGGACACCGATTTCGAGTTCGATTATCAACTGGAATTCATCGATAGTACCGAAGCGAATACTATTAAACGTATGAAGCATGAATga
- Protein Sequence
- MFSTQDTVGGQNSYQVQYVDTELYHSNSSQSQMTYPFCPVGDYQTTSQSYYSATGNYTATNTPQSHASGLPYLVPGEENLLLNSSSQSRDSPPSLPEVSYLQDAQTPTSTTPSTAGSTGTGSGAGTGGVVSGGGNGSGILNVGDTNSLANANKIASATIKWLTRNYETAEGVSLPRSTLYNHYMHHCNENKSEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPGSTLSHTMEDKPGQPFPGQNPNGGTLNGLAGGSSGTPLGGAAISKGMKKHGVKPETYEACSQYLGDGSNGIPLFPHIDLDNTYNNELTLEDVETFRSMYREHCESFLDAVLNLEFSTIEYLWRDFWRSSDNNNLDECEEEKYLSKTKLYLLCHCSGVQKFIKQVDYQFYQNMVDVLIPDVLRSIPNSLTQAIRNFAKNLEIWLCESMVGVPALVIQIKSSAVSAFCQTLRRYTSLNHLAQAARAVLQNNSQIAQMLIDLNRVDFHNVQEQAAWVCQCDTSIVQRLENDFKAALQQQNTLEQWASWLRLVVDSALEEYRDKPNYAKAARQFLLKWSFYSSMVIRDLTLRSASSFGSFHLIRLLYDEYMFFLVEHKVAEALQKTAIAVISERMQKDTDFEFDYQLEFIDSTEANTIKRMKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00426856;
- 90% Identity
- iTF_01522309; iTF_01521621; iTF_00309958; iTF_01520710; iTF_00312330; iTF_00313185; iTF_01300555; iTF_01299762; iTF_01541169; iTF_01541898; iTF_01223125; iTF_00311543; iTF_00724508; iTF_00310750; iTF_00314889; iTF_00314006; iTF_00315679; iTF_01395582;
- 80% Identity
- -