Dalb015469.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- Rfx2
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000173.1:1304050-1323332[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-38 8.4e-34 117.1 0.2 3 78 181 256 179 257 0.97 2 2 1.4 2.5e+04 -3.1 0.0 25 42 618 636 616 640 0.76
Sequence Information
- Coding Sequence
- ATGAAGCGATCTAGGCTTGTCAAACTGAAGGCTGTCAATTGTTCTGGTAATGTTTCCACACAAGACACGGTCGGTGGTCAGAATTCCTATCAAGTGCAATATGTGGACACAGAGTTGTACCACAGTAACTCCAGTCAGTCTCAAATGACATATCCTTTTTGTCCCGTCGGTGATTATCAGACAACAAGCCAATCCTACTATTCAACTACGGCCAACTACTCAACAACGAATACTCCCCCGTCGCATGCATCCGGGTTGCCTTATTTAGTTCCTGTCGAGGAGAATCTTCTCCTAAACTCCTCATCACAAAGCCGCGAATCGCCACCGAGCTTATCCGAAGTGTCTTACTTGCAGGAAGCACAAACACCAACCTCTACAACTCCATCAATTGCTGGTTCCTGTGGGACCGGAAGTGGCGGCGGTGGTGGCAGTGCCACCGGCAGTGGTAGCAATGGTGGTGTTGGCGGGGGTGTGATTGTCAGTGGGGGACTCAATGTTGGAGATTCGAATAACTTGGCAAATGCTAACAAGATTGCCTCGGCAACGATAAAATGGCTTACACGTAACTACGAAACAGCAGAAGGAGTAAGTCTGCCCCGTTCAACCCTCTACAATCACTACATGCACCATTGCAACGAAAACAAATCGGAACCAGTAAATGCTGCAAGCTTCGGCAAGTTAATTCGTTCGGTTTTCTCCGGATTGCGAACTCGTCGGTTAGGTACTCGTGGAAATTCCAAGTATCACTACTATGGCATTCGCATAAAGCCCGGATCTACCCTGTCACACACTATGGAAGATAAACCGGGACAGCAGTTCTCCGGCAAACATCCGAACGGTAATCTTAACGGGATTGGTGGTGCTGGTGGCAACAATCTCGGTGGGGGAGGAAATTCGGGCAAAGGCATGAAAAAACACAGTGTTAAGCCCGAGACATATGAAGCTTGCTCCCAGTATTTGGGCGATGGTTCTGGTTGCATTCCTATATTTCCTCATATTGAACTCGATAATACATTTAACAACGAACTTACTTTGGATGATGTTGAAACCTTTCGTTCCATGTATCGAGAGCATTGTGAATCATTTCTTGATGCTGTTTTGAATCTAGAATTTGGTACTATTGAATATCTTTGGCGTGATTTTTGGCGTTCATCGGACAACAATAACTTGGATGAATGTGAAGAAGAAAAATACTTATCTAAAACAAAACTCTATTTGCTTTGTCATTGCAATGGAGTACAAAAGTTTATTAAACAGGTTGATTACCAATTCTATCAGAACATGGTGGATGTCCTCATTCCAGACGTACTGCGTTCCATACCAAACTCACTCACCCAAGCCATTCGTAATTTTGCTAAAAATTTGGAAATCTGGCTCTGTGAGGCAATGGTAGGGGCCCCAGAACGTGTGGTCCAAATCAAATCTGCAGCTATATCGGCTTTTTGTCAAACCCTACGACGCTATACATCTTTAAATCATTTAGCTCAAGCTGCACGTGCAGTGCTTCAAAATAATTCTCAAATTGCCCAGATGTTGAATGATCTTAACCGTGTTGACTTCCACAATGTCCAAGAACAGGCTGCTTGGGTATGCCAATGTGACACTTCTATTGTACAACGTCTTGAAAATGATTTCAAAACTGCTTTACAACAACAAAATACTCTTGAACAATGGGCAAGTTGGCTACGTCTAGTAGTTGATTCAGCTTTAGAAGAATATCGAGACAAACCCAATTACGCCAAAGCTGCACGCCAATTTCTACTCAAATGGAGTTTCTATAGTTCAATGGTTATACGGGATTTGACTTTGCGATCGGCTTCAAGTTTTGGTAGCTTCCATTTGATTCGTTTGCTCTATGACGAATATATGTTTTTCTTGGTTGAACACAAAGTTGCTGAAGTTCTTCAGAAGACCGCAATCGCTGTAATTAGCGATAGAATGCAAAAAGATACTGATTTCGAGTTTGATTACCAACTGGCATTTATTGATTCTGATGCAAATGTAGCTAAACGAATGAAGCACGAATGA
- Protein Sequence
- MKRSRLVKLKAVNCSGNVSTQDTVGGQNSYQVQYVDTELYHSNSSQSQMTYPFCPVGDYQTTSQSYYSTTANYSTTNTPPSHASGLPYLVPVEENLLLNSSSQSRESPPSLSEVSYLQEAQTPTSTTPSIAGSCGTGSGGGGGSATGSGSNGGVGGGVIVSGGLNVGDSNNLANANKIASATIKWLTRNYETAEGVSLPRSTLYNHYMHHCNENKSEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPGSTLSHTMEDKPGQQFSGKHPNGNLNGIGGAGGNNLGGGGNSGKGMKKHSVKPETYEACSQYLGDGSGCIPIFPHIELDNTFNNELTLDDVETFRSMYREHCESFLDAVLNLEFGTIEYLWRDFWRSSDNNNLDECEEEKYLSKTKLYLLCHCNGVQKFIKQVDYQFYQNMVDVLIPDVLRSIPNSLTQAIRNFAKNLEIWLCEAMVGAPERVVQIKSAAISAFCQTLRRYTSLNHLAQAARAVLQNNSQIAQMLNDLNRVDFHNVQEQAAWVCQCDTSIVQRLENDFKTALQQQNTLEQWASWLRLVVDSALEEYRDKPNYAKAARQFLLKWSFYSSMVIRDLTLRSASSFGSFHLIRLLYDEYMFFLVEHKVAEVLQKTAIAVISDRMQKDTDFEFDYQLAFIDSDANVAKRMKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00426856;
- 90% Identity
- iTF_01396226; iTF_00187784; iTF_01317961; iTF_00664593; iTF_00983966; iTF_00334708; iTF_00693524; iTF_01211639; iTF_00665368; iTF_00974371; iTF_00426856; iTF_00976184; iTF_00694331; iTF_01044479;
- 80% Identity
- -