Ccot007392.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:1297847-1306160[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00028 0.017 14.9 0.5 3 23 688 708 686 708 0.96 2 17 0.24 15 5.7 0.9 3 19 716 732 715 735 0.90 3 17 0.18 11 6.2 0.9 1 23 740 762 740 762 0.96 4 17 4.4e-05 0.0027 17.5 1.6 3 23 771 792 770 792 0.98 5 17 0.0021 0.13 12.2 2.0 1 23 799 822 799 822 0.95 6 17 7.4e-05 0.0045 16.8 0.7 1 23 828 851 828 851 0.94 7 17 1.3 83 3.4 1.1 2 23 859 879 859 879 0.90 8 17 1.1e-07 6.7e-06 25.7 2.1 2 23 885 906 884 906 0.97 9 17 3.4e-06 0.00021 21.0 0.1 1 23 912 934 912 934 0.98 10 17 0.00049 0.03 14.2 2.6 2 23 946 968 945 968 0.95 11 17 0.0037 0.23 11.4 1.0 1 23 974 997 974 997 0.96 12 17 0.14 8.9 6.4 5.3 3 23 1019 1040 1017 1040 0.92 13 17 0.01 0.62 10.1 0.5 2 23 1047 1069 1046 1069 0.96 14 17 4.4e-05 0.0027 17.5 1.0 3 23 1078 1098 1076 1098 0.96 15 17 0.00094 0.058 13.3 2.3 1 23 1104 1127 1104 1127 0.96 16 17 0.25 16 5.7 3.2 2 23 1134 1155 1133 1155 0.96 17 17 0.0074 0.46 10.5 2.6 1 23 1161 1183 1161 1183 0.98
Sequence Information
- Coding Sequence
- ATGTCGAATCCTGAAATCAACAAGCGTGATCATAGTTACAGTGAATCAAAATCTCAATATGCCAACAACGGTACCACTAGCATCAGCTTAATATCTCAAACAGGATCTGTTGTGGGTCAAATTCGAGATATAAATGAGCTAAAGAAGATTACGCCTCGTGTCCGTTTACAAGACACCGAGAGCTTAAATGAGTTGACCAGGATTTCATCTTTAAGTAACAGCAAGTTACAGCAAAATAATACATCCATCCTTGAAAGGACACGACAagaactgaaaaaatattgtcgTACTTGCGCTGGTCTAAAACTACCTTTGGTGGATATCTTTAGTGAAAAAGGCATCAAACTGCGATTGAGTCAGCAAATCAAGCATCTCGAAGTTAATCCTTATGATGGTCTGTCCACACAGATGTGCATGGATTGTATCTGCGACCTTAGAAtgagttataaatttttcatgcaGATAAAGAAAGctgaaataaaactaaaatctATCCATGTCAATCTCACGACTGATAACGCTGCGAAAAAAGTAACATCGATCAACGATTCTTTAATAGTACAAGAGGATAAACAGCCATCTTATTCAGAAACAAATTCAAAACATCAAATAGCCTCTGTAATTCAACAAAACCCACCTTTATTATCAACAGAATACGTAAACCaagaaattcttgaaaatcaAACAGATAATTCTGTTCCTAAAATCTGtgctattttttcattaaatgaaTCAAAGATGGGACATGATTTTGAGATGGAGGAGAAAAAGGAGAAGGAAAAGGAGGaagaaaacaaagataaagAGGAGAAAGAGGTTATAGAGATAGGAGGAGGTATATTCGAGGAAGTTCCAGAAGGAGAAGATGAAGAATCTATTGAAGAATTTGATCCCGAAGATCCTGCGCTCCTGGTAGATGAAGAAGATGATGAAAAATCCCTCAAAACTGTCTACAAGTATGATATGGTAGCAGATTCTTATGTGAAAGTGGAAGGAAATGAGGGGATTTCTATGAAATCTGATGTCTCCCAGACTTCAGAGAGTGAAAATCAGAAAGAGGGAATGTGGCAGCCGaatatcttgaaaagaaaACTAATACCAATGATAACGACAAAGAATGGAAAGGAAGATGAGATACAAAATATAGTAGAGAAACACAAGGTGCAAAAGTTAGATACGACCAGTCTCTTGAATATGACTAATCCTACAGAAGAAGAAGGAATTATGTATGTAACTGTAAAGGGATCAAAACCAAATGAGATTCTTCTGGTAAAGGTCAAGAAAATGGACAAACCTACGGAACAAAAGCGCACAGTAGCGCCGCCAATCTCTGCTGATCTAAAACCTGTGGAGCGTTTTCTCAAACGTTATGAAACACTGACGAAGGATTTTTCATCTCGACGCCCTGATGCTCGTGAACAAATAATTGAGGAACAAAtcgaagaatataaaaagaaacgagAAAAAGTTCTTGGAGATCAGGCGTCAAAAACGTACACTATAAATGAAACGCAAAAAGAAgtacaagaagaagaaatttcTATCATTTCAGACTTGGAAAGGGCAGAAGAAGAAGTGATAGTTGTGAAAGAAGATGAAGAAGTTGAGATGAATGAAAAGGAGAAAGCGAAAGAGGAGGAAAAGGAAATAGAAGAAGAGGAAAAGcagaaaaaggaagaagagaaGATGGAAAAAGTTGAAAAGATTGAGGAAAGTCAAGAAAGGATTAGTGATAATACAGAAGAACATTTAAAgttattgaaaatgaaaaaattggaagacataaagtggaaaaaagaaattaagcaAATTAAGCAGAACGAATTATGTAGCGAAGAgaatttggaaaaattaacaaaagttTTGGGAAAAACGGAAAATCTACaggAATTTCTTGAGTATCTCAAGCTGCGTAAAATTGTTCTTACTCGCCTCAAGGACGAGGACATAATTTCTCTTTATGAGGATCGATTCTCCACGATTATAAAATCATCATCTAAATCGGATCCTATCAATACTCAACCTTCTATCGACTTTTTTTCCGAAGAGAGTTATTTAGATTGCGATTATTGTTCCAAAACTTTCTCCAATCGCGATATCCTTGAAGAACATCTCAAGTCTCATGACTACCGTATCCTTAATTGTTGTGATGATTGCGGGGAGGAATTTCAAACTAATAAAGCGAAAAGAAATCATAATATGAtttgtctgaaaaaattcatttgcaAATATTGTGACATAATCCTAGATTCCAAAGGAAAAAAACGTCAACATGAACAGAAACATGTTGATGCTCTTTACGGTCAACTTTGCGAGATTTGTGGTGAAAGATTCAAACATCAAGGAACTCTGGACCAGCATCAGAAAACGCAACACACGAGTTTGGAGAAGATTTATCAATGTCCGAAGTgtccaaaaaaatttgctttCAAACAAAAACTGAGCTTTCATCTAAAGTCTGTTCACACAACTTTAAGAGCGTATCTTTGTGAGGATTGCGGTGCGGATTTTAAGAATCCCGCGAGTTTAAGACATCATAGAATCAGAAAACATCAACCGGTTGGAAATAAGAGGGAATGTCCAGTTTGCAGGAAATTAGTGCCGTTTTACAGTTTGTCAAAACACATGCACACACATAAAGCTTACAGTATCCAGTGTCCGCATTGCgacaaaatgttcaaaaacaGCTCGACTTTGAAGCAGCATGTGAGAATTCACGAAGATCAAAGGCAATTTCGTTGTGATATTTGCGGCGTTGGATTTAATCGGAGGGATGGTTTGAGGCTGCATTTAAGAGTTCACGAAAAAAAGGGAAGTAGAGGCTTGAAAGAATGTTCCTGCCAAGTTTGTGGGGAGAAGTTCCCGAATCATTCGACTTTAGTAATTCACAGGAATAGAGAGCATAAGGATGGAAAGCAGTATACATGTAACATTTGTAATAGATCAATGATTTCGACGAGATCGCTCGAGTGGCACATGTCACATATTCATAACCAGTCAATGCCAGGTATTACCCAAGACGCGTCTGGTCTGCCCGAAAAGAAACGGGTTTGCTGCTATCATtgcaataaaacatttaagacGGAGCTGATACTTCgtacacatattaaaaatacgcaCATGGAAAAAGACCCGATGAAATGCACCGACTGTGAGGCTATTTTCACATCCGATGTACGTCTGCGTCATCATTTGATGGTTGCGCACAATCGTCTCGAGGGTACTTTGGCATGTCCTCACTGTCCAAAACGATTCGTGAATCAATTACGGCTAAAGACTCATATGATCTCCCATTCTGAGGAAAGACCATATACTTGCGAGATTTGTGGTTTCAATTTGAAGACAAAAATTCAGCTGATCAAGCATCATCAAAACCGACACAGCGACGAGAGACCCTTGCAGTGCAGATACTGTCCTTGGCGATGCAAGCAAGTGAGTGCTCTCGTATGTCACGAGCGTACGCATACCAATGAACGCCCATATTCGTGCAGCGTATGCCGGCAACGTTTCAAATATCTCGGCGACAAAAACAAACATGAACGTCGTCACGAAAGTCTCGGTGGTGCAGGCTTCAAGCGTATTGTACCTGGAAGAAATGTCAAACAGAAGAATTCGTTGCGTGTTCGCAATTCCGACGAATCTGATCAGGAAGATTCCATCAAGCGCCCGGAGAGTCAATTGGGTATTACCGAAGAGCAATTCGAGGAACAACAGGAAGAACAATATGACAATTTACCGGAAGGACAAATAGTCAAATTCGAAGAAGTTAAATTTGAAGCTGGAGATCAATATGAACAGGTGTATGAGCAGGATTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACTGAATTAATCATGAACATAGAAGATTCCAATATGTATACTGAAGAAGTTACGGCCGATAGTATAGAGTCAAGTGCAGAGATCATAACAGATGAAATTATGACGAATGATATTTTGCAATCTGGCACTGCGGTGGTGTTGCAAAGCGAAGATGACTCAGGGAAGATTCAAGTGATACCCATACCAGTGGTGCTATCTCTGGCCGATGCAAATACTGAAGTTAATCTCCCGACCGCGTCAATCATGTATAACAATTAG
- Protein Sequence
- MSNPEINKRDHSYSESKSQYANNGTTSISLISQTGSVVGQIRDINELKKITPRVRLQDTESLNELTRISSLSNSKLQQNNTSILERTRQELKKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDGLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTTDNAAKKVTSINDSLIVQEDKQPSYSETNSKHQIASVIQQNPPLLSTEYVNQEILENQTDNSVPKICAIFSLNESKMGHDFEMEEKKEKEKEEENKDKEEKEVIEIGGGIFEEVPEGEDEESIEEFDPEDPALLVDEEDDEKSLKTVYKYDMVADSYVKVEGNEGISMKSDVSQTSESENQKEGMWQPNILKRKLIPMITTKNGKEDEIQNIVEKHKVQKLDTTSLLNMTNPTEEEGIMYVTVKGSKPNEILLVKVKKMDKPTEQKRTVAPPISADLKPVERFLKRYETLTKDFSSRRPDAREQIIEEQIEEYKKKREKVLGDQASKTYTINETQKEVQEEEISIISDLERAEEEVIVVKEDEEVEMNEKEKAKEEEKEIEEEEKQKKEEEKMEKVEKIEESQERISDNTEEHLKLLKMKKLEDIKWKKEIKQIKQNELCSEENLEKLTKVLGKTENLQEFLEYLKLRKIVLTRLKDEDIISLYEDRFSTIIKSSSKSDPINTQPSIDFFSEESYLDCDYCSKTFSNRDILEEHLKSHDYRILNCCDDCGEEFQTNKAKRNHNMICLKKFICKYCDIILDSKGKKRQHEQKHVDALYGQLCEICGERFKHQGTLDQHQKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDICGVGFNRRDGLRLHLRVHEKKGSRGLKECSCQVCGEKFPNHSTLVIHRNREHKDGKQYTCNICNRSMISTRSLEWHMSHIHNQSMPGITQDASGLPEKKRVCCYHCNKTFKTELILRTHIKNTHMEKDPMKCTDCEAIFTSDVRLRHHLMVAHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGAGFKRIVPGRNVKQKNSLRVRNSDESDQEDSIKRPESQLGITEEQFEEQQEEQYDNLPEGQIVKFEEVKFEAGDQYEQVYEQDYEETSREASEATELIMNIEDSNMYTEEVTADSIESSAEIITDEIMTNDILQSGTAVVLQSEDDSGKIQVIPIPVVLSLADANTEVNLPTASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476445; iTF_00181485; iTF_01477805; iTF_00016206; iTF_01477089; iTF_00015560; iTF_00016847; iTF_00014902; iTF_01261977; iTF_00182141;
- 90% Identity
- -
- 80% Identity
- -