Acep001548.1
Basic Information
- Insect
- Atta cephalotes
- Gene Symbol
- -
- Assembly
- GCA_000143395.2
- Location
- NW:621784-629641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.7e-05 0.0056 16.3 0.1 2 23 698 719 697 719 0.97 2 17 0.55 32 4.5 2.8 1 19 725 743 725 744 0.91 3 17 0.2 11 5.9 0.9 1 23 751 773 751 773 0.97 4 17 4.1e-05 0.0024 17.5 1.6 3 23 782 803 781 803 0.98 5 17 0.002 0.11 12.2 2.0 1 23 810 833 810 833 0.95 6 17 6.9e-05 0.004 16.8 0.7 1 23 839 862 839 862 0.94 7 17 1.3 72 3.4 1.1 2 23 870 890 870 890 0.90 8 17 1e-07 5.8e-06 25.7 2.1 2 23 896 917 895 917 0.97 9 17 8.4e-06 0.00049 19.6 0.2 1 23 923 945 923 945 0.98 10 17 0.00046 0.026 14.2 2.6 2 23 957 979 956 979 0.95 11 17 0.0057 0.33 10.7 2.5 1 23 985 1008 985 1008 0.96 12 17 0.021 1.2 9.0 2.8 2 23 1029 1051 1028 1051 0.94 13 17 0.016 0.94 9.3 0.4 2 23 1058 1080 1057 1080 0.96 14 17 4.2e-05 0.0024 17.5 1.0 3 23 1089 1109 1087 1109 0.96 15 17 0.00088 0.051 13.3 2.3 1 23 1115 1138 1115 1138 0.96 16 17 0.068 3.9 7.3 3.3 2 23 1145 1166 1144 1166 0.96 17 17 0.0069 0.4 10.5 2.6 1 23 1172 1194 1172 1194 0.98
Sequence Information
- Coding Sequence
- atgtCAAATCTTGAAATCAACAAACGTGATCACAACTACAGTGAATCGAAACCTCAACATGCCAACAATGGTACTGGTACCACCATTAGCAAAATATCTCAGACAGGGTCTATTGTAGGTCAAATTCGAGACATAGATGAGCTGAAGAAGATTGCGCCTCGTGTTCGTTTACAGGATACCGAGAGTTTAAATGAGTTGACAAGGATTTCGTCTTTAAGTAACAGCAAGTCACAGCAAAATGATACATCCGTTCTTGAAAGGACACGgcaagaattaagaaaatattgtcGTACCTGTGCTGGCCTAAAATTGCCTTtgGTGGACATCTTTAGTGAAAAGGGTATCAAATTGAGATTGAGTCAGCAAATCAAGCATCTTGAAGTTAATCCTTATGATAGTAGTCTGTCCACACAGATGTGCATGGACTGTATCTGTGACCTTAGAAtgagttataaatttttcatgcagaTAAAAAAAGCTGAGATAAAACTAAAATCTATCCATGTTAATCTCACGACTGATAATGCTACGAAGAAGGTAACATCGATCGATGATTCTTTAATAGTAAAAGAGGATAAGCAACTATCCTATTCAGAAATAAAGCCAGAATATCAATTACCTTCCGCAATTCAACAAAATCCATCTTCATTATCAACAGAGCACGTTAACCAAATAATTCCTGAAAATCAAATAGATGATTCAGTTCCCAAAATCTGTGCCATTTTTTCATTGAACGAATCAAAAATGAGACAGGACTTTGAAATTGAGAAGGAAAcagagaaggaaaaagaagaagaagaagataaagaCACCGTGGAGAAAGAGATGATACAAGTAGGAGGAGGGATATTCGAGGAAGTGGCAGAAGGAGAAGATGAAGAATCTATTGAGGAATTTGATCCTGAAGACCCTGCGCTCCTGGTAgatgaagaagaggaagaagaaaaatctctaaaaactGTCTACAAGTATGATATGGCAGCAGATTCTTATGTGAGAGTGGAAGGAAATGAGGGAATTTCTGTGAAATCTGAAGTCTTCCAGACTTCAGAAGGTGAAAGTCAAAAAGAGGGAATGTGGCAACCGaatatcttgaaaagaaaattaataccaATGATATCGAATAATGGAGGGGAAGATGAGATTCAAAGTATAGTAGAGAAGCATAAAGTGCAGAAGTTAGATACGAACAGTctcttaaatatgaataatccTTCAGAAGAAGAAGGAATTATGTACGTAACTGTGAAGGGATCCAAGCCGAACGAAATTCTTCTGGTAAAAGTCAAGAAAATGGACAAACCCATGGAACCAAAGCGCGCAGTAGTAGTGCCAGTCTCCGCTGATCTCAAGCCTGTTGAACGTTTTCTTAAACGTTACGAAACACTGACAAAGGATTTTTCATCTCGACGCCCCGACGCTCGTGAACAAATAATTGAGGAACAAATCGaagaatacaaaaagaaacgAGAAAAAGTTCTTGGAAATCAGGCGGCAGTAACGTATACCATGAACGAAACACAAAAAGAAGTTCAAGAAGAAGAAGACATTTctatcaaatcaaattttgaaaaaacggAAGAAGAAATGATAGctataaaagaagaagatgaagagagagagatgaagaaagaggagaaaatgaaaaataaggaGGAAAAGGAaatgaaagaagaagagaagccgaaagaagaaaaaatggaGAAAGATGTAAAGATTGAGAAAAGTCAAGAAAGGATTAGTGATAATACAGAAGAACATTCAAAGTTGTcgagaatgaaaaaattggaAGAGACAAAACGGAAAAAGGAAAGTTTGCAAAAAGAACTAGACGAATCATGTAACGAAgagaatttggaaaaattagcAAAAGTCTTGGAGAAAACAGAAAATCTGCaggAATTTCTAGAATATCTAAAGCAGCGTAAAATCATTCTTGCTCGCCTCAAGGACGAAGACATAATCTCCCTCTATGAGGATCGATTTTCCACAACTATAAAATCATCATCTAAATCGCTTCCAGATCTTATGGATACTCAACATCCTTCCGGTCTTCTTTTCGATCTTGTTTCCGacgaagataattatttagaatgtgATTATTGTTCCGAAACCTTCCCCAATCGCGATCTCCTTGAAGGACACTTAAAATCTCACGATTACCGTATCCTTCATTGCTGCGATGATTGCGGGGAAGAATTTCAGACTAATAAAGCGAAAAGAAATCATAATGtgatttgtgtaaaaaaattcatttgcaAATATTGCGAAATAGTCCTAGATTCCAAAGGAAAAAAACGTCAACATGAGCAGAAACACGTTGATACTCTTTACGGTCAACTTTGCGAGATTTGTGGTGAAAGATTCAAACATCAAGGAACTCTGGACCAGCATCAGAAGACACAACACACGAGTTTGGAGAAGATTTATCAATGTCCAAAGtgtccaaaaaaatttgctttcaaacaaaaattgagCTTTCATCTAAAATCTGTTCACACTACTTTAAGAGCATATCTTTGCGAGGATTGCGGTGCGGATTTTAAGAATCCCGCGAGTTTAAGACATCATAGAATTAGAAAACATCAACCGGTTGGAAATAAGAGGGAATGTCCAGTTTGCAGAAAATTGGTGCCGTTTTACAGTTTGTCAAAACACATGCATACACACAAAGCTTACAGTATCCAGTGTCCACATTGCgataaaatgttcaaaaacaGCTCGACTTTGAAACAACATGTGAGAATTCACGAAGATCAAAGACAGTTCCGTTGTGATACTTGCGGCGTTGGATTTAATCGGAGAGATGGTTTGAGGCTGCATTTGAGAGTGCACGAAAAAACTGGAAGTAGAGGGTTGAAAGAATGTTCCTGCCAAGTTTGTGGGGAAAAGTTCCCGAATCATTCGACTTTGGTAATTCACAGGAATAGAGAACATAAGGATGGAAAGCAGTATACGTGTCATATTTGTAATAGATCAATGATTTCGACGAGATCGCTTGAGTGGCATATGTCACATATTCATAACCAGTTAGTACCAGgtATTACCCGCAACGAGTCTGGTCTACCCGAAAAAAAACGGGTTTCTTGCTATCATTGCAATAAGACCTTTAAGACAGAGCTGATACTTCGtacacatattaaaaatacgcaCATGGAAAAGGACCCGTTGAAATGCACCGACTGTGAAGGTATTTTCAACTCCGAAGTGCGTTTGCGTCATCATTTGATGGTCGTGCACAATCGTCTCGAGGGTACTTTAGCATGTCCTCATTGTCCAAAACGATTCGTGAATCAATTACGATTAAAGACTCATATGATCTCCCATTCTGAGGAAAGACCATATACTTGCGAGATTTGtggtttcaatttgaagacaAAGATTCAGTTGATCAAGCATCATCAAAACCGACACAGCGATGAGAGACCTTTGCAATGCAAaTACTGTCCTTGGCGATGTAAGCAAGTGAGTGCTCTCGTTTGTCACGAGCGTACGCATACCAATGAACGCCCATATTCATGCAGCGTGTGCCGGCAACGTTTTAAATACCTCGGCGACAAAAACAAGCATGAACGTCGTCACGAAAGTCTCGGTGGTTCAGGTTTCAAGCGTATTGTACCCGGAAGAAATCTTAAACAGAAGAATTCGAATCCGGCGTGCGTCAATTCCGATGTCGAATCCGATCAGGACGATACCGTCAAGCGCTCGGTGAGTCAACTGGATATGCATGTTACCGAAGAGCAATTCGAGGAACAACAGGAAGGACAATATGCGAATTTATCAGAAGGACAAATAGTTAAATTCGAAGAAGTCAAGTTTGAAAATGGAGAACAATACGAACAGGTGTATGAACAGGAGTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACCGAATTAATTATGAACATAGAAGATTCCAATATGTATACCGAAGAAGTTACGGCCGATAGTATAGAGTCTGGCGCAGAGATAATAACAGATGAAATTATGACGAATGATATTTTGCAATCTGGCACCGCGGTGGTGCTGCAAAGCGAAGACGACTCGGGGAAGATTCAAGTGATACCCATACCAGTGGTATTATCTCTGCCCGACTTGTCCGACACAAACACTGAAGTTAATCTCCCGACCGCATCAATCatgtataacaattaa
- Protein Sequence
- MSNLEINKRDHNYSESKPQHANNGTGTTISKISQTGSIVGQIRDIDELKKIAPRVRLQDTESLNELTRISSLSNSKSQQNDTSVLERTRQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSSLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTTDNATKKVTSIDDSLIVKEDKQLSYSEIKPEYQLPSAIQQNPSSLSTEHVNQIIPENQIDDSVPKICAIFSLNESKMRQDFEIEKETEKEKEEEEDKDTVEKEMIQVGGGIFEEVAEGEDEESIEEFDPEDPALLVDEEEEEEKSLKTVYKYDMAADSYVRVEGNEGISVKSEVFQTSEGESQKEGMWQPNILKRKLIPMISNNGGEDEIQSIVEKHKVQKLDTNSLLNMNNPSEEEGIMYVTVKGSKPNEILLVKVKKMDKPMEPKRAVVVPVSADLKPVERFLKRYETLTKDFSSRRPDAREQIIEEQIEEYKKKREKVLGNQAAVTYTMNETQKEVQEEEDISIKSNFEKTEEEMIAIKEEDEEREMKKEEKMKNKEEKEMKEEEKPKEEKMEKDVKIEKSQERISDNTEEHSKLSRMKKLEETKRKKESLQKELDESCNEENLEKLAKVLEKTENLQEFLEYLKQRKIILARLKDEDIISLYEDRFSTTIKSSSKSLPDLMDTQHPSGLLFDLVSDEDNYLECDYCSETFPNRDLLEGHLKSHDYRILHCCDDCGEEFQTNKAKRNHNVICVKKFICKYCEIVLDSKGKKRQHEQKHVDTLYGQLCEICGERFKHQGTLDQHQKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHLRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNREHKDGKQYTCHICNRSMISTRSLEWHMSHIHNQLVPGITRNESGLPEKKRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCTDCEGIFNSEVRLRHHLMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCKYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNLKQKNSNPACVNSDVESDQDDTVKRSVSQLDMHVTEEQFEEQQEGQYANLSEGQIVKFEEVKFENGEQYEQVYEQEYEETSREASEATELIMNIEDSNMYTEEVTADSIESGAEIITDEIMTNDILQSGTAVVLQSEDDSGKIQVIPIPVVLSLPDLSDTNTEVNLPTASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00417783;
- 90% Identity
- iTF_01477805;
- 80% Identity
- -