Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:535824-544714[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0001 0.0055 16.3 0.1 2 23 697 718 696 718 0.97

2 17 0.59 31 4.5 2.8 1 19 724 742 724 743 0.91

3 17 0.21 11 5.9 0.9 1 23 750 772 750 772 0.97

4 17 4.4e-05 0.0023 17.5 1.6 3 23 781 802 780 802 0.98

5 17 0.0021 0.11 12.2 2.0 1 23 809 832 809 832 0.95

6 17 7.4e-05 0.0039 16.8 0.7 1 23 838 861 838 861 0.94

7 17 1.3 71 3.4 1.1 2 23 869 889 869 889 0.90

8 17 1.1e-07 5.7e-06 25.7 2.1 2 23 895 916 894 916 0.97

9 17 9e-06 0.00048 19.6 0.2 1 23 922 944 922 944 0.98

10 17 0.00049 0.026 14.2 2.6 2 23 956 978 955 978 0.95

11 17 0.0061 0.33 10.7 2.5 1 23 984 1007 984 1007 0.96

12 17 0.022 1.2 9.0 2.8 2 23 1028 1050 1027 1050 0.94

13 17 0.017 0.92 9.3 0.4 2 23 1057 1079 1056 1079 0.96

14 17 4.4e-05 0.0024 17.5 1.0 3 23 1088 1108 1086 1108 0.96

15 17 0.00094 0.05 13.3 2.3 1 23 1114 1137 1114 1137 0.96

16 17 0.073 3.9 7.3 3.3 2 23 1144 1165 1143 1165 0.96

17 17 0.0074 0.39 10.5 2.6 1 23 1171 1193 1171 1193 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0001	0.0055	16.3	0.1	2	23	697	718	696	718	0.97
2	17	0.59	31	4.5	2.8	1	19	724	742	724	743	0.91
3	17	0.21	11	5.9	0.9	1	23	750	772	750	772	0.97
4	17	4.4e-05	0.0023	17.5	1.6	3	23	781	802	780	802	0.98
5	17	0.0021	0.11	12.2	2.0	1	23	809	832	809	832	0.95
6	17	7.4e-05	0.0039	16.8	0.7	1	23	838	861	838	861	0.94
7	17	1.3	71	3.4	1.1	2	23	869	889	869	889	0.90
8	17	1.1e-07	5.7e-06	25.7	2.1	2	23	895	916	894	916	0.97
9	17	9e-06	0.00048	19.6	0.2	1	23	922	944	922	944	0.98
10	17	0.00049	0.026	14.2	2.6	2	23	956	978	955	978	0.95
11	17	0.0061	0.33	10.7	2.5	1	23	984	1007	984	1007	0.96
12	17	0.022	1.2	9.0	2.8	2	23	1028	1050	1027	1050	0.94
13	17	0.017	0.92	9.3	0.4	2	23	1057	1079	1056	1079	0.96
14	17	4.4e-05	0.0024	17.5	1.0	3	23	1088	1108	1086	1108	0.96
15	17	0.00094	0.05	13.3	2.3	1	23	1114	1137	1114	1137	0.96
16	17	0.073	3.9	7.3	3.3	2	23	1144	1165	1143	1165	0.96
17	17	0.0074	0.39	10.5	2.6	1	23	1171	1193	1171	1193	0.98

Sequence Information

Coding Sequence: atgtCAAATCTTGAAATCAACAAACGTGATCACAACTACAGTGAATCGAAACCTCAACATGCCAACAATGGTACTGGTACCACCATTAGCAAAATATCTCAGACAGGGTCTATTGTAGGTCAAATTCGAGACATAGATGAGCTGAAGAAGATTGCGCCTCGTGTTCGTTTACAGGATACCGAGAGTTTAAATGAGTTGACAAGGATTTCGTCTTTAAGTAACAGCAAGTCACAGCAAAATGATACATCCGTTCTTGAAAGGACACGgcaagaattaagaaaatattgtcGTACCTGTGCTGGCCTAAAATTGCCTTtgGTGGACATCTTTAGTGAAAAGGGTATCAAATTGAGATTGAGTCAGCAAATCAAGCATCTCGAAGTTAATCCTTATGATAGTAGTCTGTCCACACAGATGTGCATGGACTGTATCTGTGACCTTAGAAtgagttataaatttttcatgcagaTAAAAAAAGCTGAGATAAAACTAAAATCTATCCATGTTAATCTCACGACTGATAATGCTACGAAGAAGGTAACATCGATCGATGATTCTTTAATAGTAAAAGAGGATAAGCAACTATCCTATTCAGAAATAAAGCCAGAATATCAATTACCTTCCGCAATTCAACAAAATCCATCTTCATTATCAACAGAGCATGTTAACCAAATAATTCCTGAAAATCAAATAGATGATTCAGTTCCCAAAATCTGTGCCATTTTTTCATTGAACGAATCAAAAATGAGACAGGACTTTGAAATTGAGAAGGAAAtagagaaggaaaaagaagaagaagaagataaagaCACCGTGGAGAAAGAGATGATACAAGTAGGAGGAGGGATATTCGAGGAAGTGGCAGAAGGAGAAGATGAAGAATCTATTGAGGAATTTGATCCTGAAGACCCTGCGCTCCTGGTAGatgaagaagaggaagaagaaaaatctctaaaaactGTGTACAAGTATGATATGGCAGCAGATTCTTATGTGAGAGTGGAAGGAAATGAGGGAATTTCTGTGAAATCTGAAGTCTTCCAGACTTCAGAAGGTGAAAGTCAAAAAGAGGGAATGTGGCAACCGaatatcttgaaaagaaaattaataccaATGATATCGAATAATGGAGGGGAAGATGAGATTCAAAGTATAGTAGAGAAGCATAAAGTGCAGAAGTTAGATACGAACAGTctcttaaatatgaataatccTTCAGAAGAAGAAGGAATTATGTACGTAACTGTGAAGGGATCCAAGCCGAACGAAATTCTTCTGGTAAAAGTCAAGAAAATGGACAAACCCATGGAACCAAAGCGCGCAGTAGTGCCAGTCTCTGCTGATCTCAAGCCTGTTGAACGTTTTCTTAAACGTTACGAAACACTGACAAAGGATTTTTCATCTCGACGTCCCGACGCTCGTGAACAAATAATTGAGGAACAAATCGaagaatacaaaaagaaaCGAGAAAAAGTTCTTGGAAATCAGGCGGCGGTAACATATACCATGAACGAAACACAAAAAGAAGTTCAAGAAGAAGAAGACATTTctatcaaatcaaattttgaaaaaacggAAGAAGAAATGATAGctataaaagaagaagatgaagagagagagacgaagaaagaggagaaaatgaaagataaGGAGGAAAAGGAaatgaaagaagaagagaagccgaaagaagaaaaaatggaGAAAGATGTAAAGATTGAGAAAAGTCAAGAAAGGATTAGTGATAATACAGAAGAACATTCAAAGTTGTcgagaatgaaaaaattggaAGAGACAAAACGGAAAAAGGAAAGTTTGCAAAAGGAACTAGACGAATCATGTAACGAAgagaatttggaaaaattagcAAAAGTCTTGGAGAAAACAGAAAATCTGCAGgAATTTCTAGAATATCTAAAGCAGCGTAAAATCATTCTTGCTCGCCTCAAGGACGAAGACATAATTTCCCTCTATGAGGATCGATTTTCCACAACTATAAAATCATCATCTAAATCGCTTCCAGATCTTATGGATACTCAACATCCTTCTGGTCTTCTTTTCGATCTTGTTTCCGacgaagataattatttagaatgtgATTATTGTTCCGAAACCTTTCCCAATCGCGATCTCCTTGAAGGACACTTAAAATCTCACGATTACCGTATCCTTCATTGCTGCGATGATTGCGGGGAAGAATTTCAGACTAATAAAGCGAAAAGAAATCATAATGtgatttgtgtaaaaaaattcatttgcaAATATTGCGAAATAGTCCTAGATTCCAAAGGAAAAAAACGTCAACATGAGCAGAAACACGTTGATACTCTTTACGGTCAACTTTGCGAGATTTGTGGTGAAAGATTCAAACATCAAGGAACTCTGGACCAGCATCAGAAGACACAACACACGAGTTTGGAGAAGATTTATCAATGTCCAAAGTgtccaaaaaaatttgctttcaaacaaaaattgagCTTTCATCTAAAATCTGTTCACACTACTTTAAGAGCATATCTTTGCGAGGATTGCGGTGCGGATTTTAAGAATCCCGCGAGTTTAAGACATCATAGAATTAGAAAACATCAACCGGTTGGAAATAAGAGGGAATGTCCAGTTTGCAGAAAATTGGTGCCGTTTTACAGTTTGTCAAAACACATGCATACACACAAAGCTTACAGTATCCAGTGTCCACATTGCgataaaatgttcaaaaatagCTCGACCTTGAAACAACATGTGAGAATTCACGAAGATCAAAGACAGTTCCGTTGTGATACTTGCGGCGTTGGATTTAATCGGAGAGATGGTTTGAGGCTGCATTTGAGAGTGCACGAAAAAACTGGAAGTAGAGGGTTGAAAGAATGTTCCTGCCAAGTTTGTGGGGAAAAGTTCCCGAATCATTCGACTTTGGTAATTCACAGGAATAGAGAACATAAGGATGGAAAGCAGTATACGTGTCATATTTGTAATAGATCAATGATTTCGACGAGATCGCTTGAGTGGCATATGTCAcatattcataatcagttAGTACCAGgtATTACCCGCAACGAGTCTGGTCTACCCGAAAAAAAACGGGTTTCTTGCTATCATTGCAATAAGACCTTTAAGACAGAGCTGATACTTCGtacacatattaaaaatacgcaCATGGAAAAAGACCCGTTGAAATGCACTGACTGTGAAGGTATTTTCAACTCCGAAGTGCGTTTGCGTCATCATTTGATGGTCGTGCACAACCGTCTCGAGGGTACTTTAGCATGTCCTCATTGTCCAAAACGATTCGTGAATCAATTACGGTTAAAGACTCATATGATCTCCCATTCTGAGGAAAGACCATATACTTGCGAGATTTGtggtttcaatttgaagacaAAGATTCAGCTGATCAAGCATCATCAAAACCGACACAGCGATGAGAGACCTTTACAGTGCAAaTACTGTCCTTGGCGATGTAAGCAAGTGAGTGCTCTCGTTTGTCACGAGCGTACGCATACCAATGAACGCCCATATTCATGCAGCGTGTGCCGGCAACGTTTTAAATATCTCGGCGACAAAAACAAGCATGAACGTCGTCACGAAAGTCTCGGTGGTTCAGGTTTCAAGCGTATTGTACCCGGAAGAAATCTTAAACAGAAGAATTCGAATCCGGCGTGCGTCAATTCCGATGTCGAATCTGATCAGGATGATACCGTCAAGCGCTCGGTGAGTCAACTGGATATGCATGTTACCGAAGAGCAATTCGAGGAACAACAGGAAGGACAATATGCGAATTTATCAGAAGGACAAATAGTTAAATTCGAAGAAGTCAAGTTTGAAAATGGAGAACAATACGAACAGGTGTATGAACAGGAGTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACCGAATTAATTATGAACATAGAAGATTCCAATATGTACACCGAAGAAGTTACGGCCGATAGTATAGAGTCTGGCGCAGAGATAATAACAGATGAAATTATGACGAATGATATTTTGCAATCTGGCACCGCGGTGGTGCTGCAAAGCGAAGACGACTCGGGGAAGATTCAAGTGATACCCATACCAGTGGTATTATCTCTGCCCGACTTGTCCGACACAAACACTGAAGTTAATCTCCCGACCGCATCAATCatgtataacaattaa
Protein Sequence: MSNLEINKRDHNYSESKPQHANNGTGTTISKISQTGSIVGQIRDIDELKKIAPRVRLQDTESLNELTRISSLSNSKSQQNDTSVLERTRQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSSLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTTDNATKKVTSIDDSLIVKEDKQLSYSEIKPEYQLPSAIQQNPSSLSTEHVNQIIPENQIDDSVPKICAIFSLNESKMRQDFEIEKEIEKEKEEEEDKDTVEKEMIQVGGGIFEEVAEGEDEESIEEFDPEDPALLVDEEEEEEKSLKTVYKYDMAADSYVRVEGNEGISVKSEVFQTSEGESQKEGMWQPNILKRKLIPMISNNGGEDEIQSIVEKHKVQKLDTNSLLNMNNPSEEEGIMYVTVKGSKPNEILLVKVKKMDKPMEPKRAVVPVSADLKPVERFLKRYETLTKDFSSRRPDAREQIIEEQIEEYKKKREKVLGNQAAVTYTMNETQKEVQEEEDISIKSNFEKTEEEMIAIKEEDEERETKKEEKMKDKEEKEMKEEEKPKEEKMEKDVKIEKSQERISDNTEEHSKLSRMKKLEETKRKKESLQKELDESCNEENLEKLAKVLEKTENLQEFLEYLKQRKIILARLKDEDIISLYEDRFSTTIKSSSKSLPDLMDTQHPSGLLFDLVSDEDNYLECDYCSETFPNRDLLEGHLKSHDYRILHCCDDCGEEFQTNKAKRNHNVICVKKFICKYCEIVLDSKGKKRQHEQKHVDTLYGQLCEICGERFKHQGTLDQHQKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHLRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNREHKDGKQYTCHICNRSMISTRSLEWHMSHIHNQLVPGITRNESGLPEKKRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCTDCEGIFNSEVRLRHHLMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCKYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNLKQKNSNPACVNSDVESDQDDTVKRSVSQLDMHVTEEQFEEQQEGQYANLSEGQIVKFEEVKFENGEQYEQVYEQEYEETSREASEATELIMNIEDSNMYTEEVTADSIESGAEIITDEIMTNDILQSGTAVVLQSEDDSGKIQVIPIPVVLSLPDLSDTNTEVNLPTASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417783;
90% Identity: iTF_01477805;
80% Identity: -