Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:500881-508816[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0003 0.021 14.7 0.6 2 23 715 736 714 736 0.97

2 17 0.18 13 6.0 1.8 1 19 742 760 742 763 0.90

3 17 0.2 14 5.9 0.9 1 23 768 790 768 790 0.97

4 17 4.1e-05 0.0028 17.5 1.6 3 23 799 820 798 820 0.98

5 17 0.0019 0.13 12.2 2.0 1 23 827 850 827 850 0.95

6 17 6.8e-05 0.0047 16.8 0.7 1 23 856 879 856 879 0.94

7 17 1.2 86 3.3 1.1 2 23 887 907 887 907 0.90

8 17 1e-07 6.9e-06 25.7 2.1 2 23 913 934 912 934 0.97

9 17 8.3e-06 0.00058 19.6 0.2 1 23 940 962 940 962 0.98

10 17 0.00045 0.031 14.2 2.6 2 23 974 996 973 996 0.95

11 17 0.0057 0.39 10.7 2.5 1 23 1002 1025 1002 1025 0.96

12 17 0.02 1.4 9.0 2.8 2 23 1046 1068 1045 1068 0.94

13 17 0.047 3.3 7.8 0.5 2 23 1075 1097 1074 1097 0.96

14 17 4.1e-05 0.0028 17.4 1.0 3 23 1106 1126 1104 1126 0.96

15 17 0.00087 0.06 13.3 2.3 1 23 1132 1155 1132 1155 0.96

16 17 0.067 4.7 7.3 3.3 2 23 1162 1183 1161 1183 0.96

17 17 0.0068 0.47 10.5 2.6 1 23 1189 1211 1189 1211 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0003	0.021	14.7	0.6	2	23	715	736	714	736	0.97
2	17	0.18	13	6.0	1.8	1	19	742	760	742	763	0.90
3	17	0.2	14	5.9	0.9	1	23	768	790	768	790	0.97
4	17	4.1e-05	0.0028	17.5	1.6	3	23	799	820	798	820	0.98
5	17	0.0019	0.13	12.2	2.0	1	23	827	850	827	850	0.95
6	17	6.8e-05	0.0047	16.8	0.7	1	23	856	879	856	879	0.94
7	17	1.2	86	3.3	1.1	2	23	887	907	887	907	0.90
8	17	1e-07	6.9e-06	25.7	2.1	2	23	913	934	912	934	0.97
9	17	8.3e-06	0.00058	19.6	0.2	1	23	940	962	940	962	0.98
10	17	0.00045	0.031	14.2	2.6	2	23	974	996	973	996	0.95
11	17	0.0057	0.39	10.7	2.5	1	23	1002	1025	1002	1025	0.96
12	17	0.02	1.4	9.0	2.8	2	23	1046	1068	1045	1068	0.94
13	17	0.047	3.3	7.8	0.5	2	23	1075	1097	1074	1097	0.96
14	17	4.1e-05	0.0028	17.4	1.0	3	23	1106	1126	1104	1126	0.96
15	17	0.00087	0.06	13.3	2.3	1	23	1132	1155	1132	1155	0.96
16	17	0.067	4.7	7.3	3.3	2	23	1162	1183	1161	1183	0.96
17	17	0.0068	0.47	10.5	2.6	1	23	1189	1211	1189	1211	0.98

Sequence Information

Coding Sequence: atgtcAAATCACGAAATCAATAAGCGTGATCACAACTACAGTGAATCGAAACCTCAACATGCCAACAATAGTACCAGTAACACTATTAGCAAAATATCTCAGACAGGGTCTGTTGTGGGTCAAATTCGAGACATAGATGAGCTGAAGAAGATTGCGCCTCGTGTTCGTTTACAGGATACTGAGAGCTTAAATGAGTTGACAAGGATTTCATCTTTAAGTAACAGCAAGTCGCAGCAAAATGATATATCCATTCTCGAAAGGACGCGGCAAGAATTAAGAAAATACTGCCGTACCTGTGCTGGCCTAAAACTGCCTTTGGTGGACATCTTTAGTGAAAAGGGTATCAAATTGAGATTGAGCCAGCAAATCAAGCATCTCGAAGTTAATCCTTATGATAGTAGTCTGTCCACACAGATGTGCATGGACTGTATCTGTGACCTTAGAATgagttataaatttttcatgcagATAAAAAAAGctgagataaaattaaaatctatccATGTCAATCTCACAACTGATAATGCTACGAAGAAGGTAACATCGATCGATGATTCTTTAATAGTAAAAGAGGATAAGCAACCATCCTATTCAGAAATAAAGCCAGAATATCAATTATCCTCTGCAATTCAACAAAATCCATCTTTATCATCAACAGAGCACGTAAACCAAGCAATTCCTGAAAATCAAATAGACGATTCTGTTCCCAAAATCTGTGCCATCTTTTCATTGAATGAATCAAAGATGGGACAGGACTTTGAAATTGAGAAGGAAATGGAGAAggaaaaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacaagGACACCGAGGAGAAAGAGGTGACACAGGTAGGAGGAGGGATATTTGAGGAAGTGGCAGAAGGAGAAGATGAAGAATCTATTGAGGAATTTGATCCTGAAGATCCTGCGCTCCTGGtagatgaagaagaagaagaaaaatccCTAAAAACTGTCTACAATTATGATATGGCAGCAGATTCTTATGTGAGAGTGGAAGGAAATGAGGGAATTTCTGTGAAATCTGAAGTCTCCCAGACTTCAGAGGGTGAAAATCAAAGAGAGGGAATGTGGCAgccaaatatcttgaaaagaaaattaataccAATGATATCGAATAATGGAGGAGAAGATGAGATTCAAAGTATAGTAGAGAAGCATAAAGTGCAGAAGTTAGATACGAACAGTCTCTTGAATATGAATAATCCTTCCGAAGAAGAAGGAATTATGTACGTAACTGTGAAGGGATCCAAACCGAACGAAATTCTTCTGGTAAAGGTCAAGAAAATGGACAAACTCACGGAACCAAAGCGCGCAGTAGTGCCAGTTTCCGCTGATCTCAAGCCTGTTGAACGTTTTCTCAAACGTTACGAAACACTGACGAAGGATTTTTCATCTCGACGGCCCGACGCACGTGAACAAATAATTGAGGAACAAATcgaagaatataaaaagaaacgaGAAAAAGTTCTTGGAAATCAGGCGGCGGTAACGCATACCGCGAACGAAACACAAAAGGAAGTTCAAGAAGAAGACATTTCTATCAAATCAAATTTTGAAAGGACAGAAGAAGAAATGATAGTTATAAAAGAAGAggatgaagagagagagacgagGAAAGAGGAGAAAATGAAAGATAAGGAGGAAGAGGAAAtgaaagaagaagaggagaatGAGAagcagaaagaaaaagaaaaaatggagAATGATGTAAAGATTGAGAAAGGTCAAGAAAGGATTAGTGATAATACAGAAGAACATTTAAAGTTATCGAGAATGAAAAAATTGGAAGAGACAAAGCGGAAAAAGGAAAGCTTGCAAAAGGAACTAGACGAATCATGTAACGAAgagaatttagaaaaattagcaAAAGTCTTGGAAAAAACAGAAAATCTGCAGgAATTTCTAGAATATCTGAAGCAGCGTAAAATCATTCTTGCTCGCCTCAAGGACGAAGATATAATCTCCCTCTATGAAGCTCAATTCTCCACAACTATAAAATCATCATCTAAATCGCTTCCAGATCTTGTGGATACTCAACATCCTTCCGGTCTTCTTTTCGATCTTCTTTCCGACgaagataattatttagaatgcGATTATTGTTCCGAAACCTTCCCCAACTGCGACCTTCTTGAAGGACACCTGAAATCTCACGACTACCGTATCCTTCATTGCTGCGATGATTGCGGAGAAGAATTTCAAACTAATAAAGCGAAAAGAAATCATAATATGCTTTgtgtgaaaaaatttatttgcaaatattgcGAAATAGTCCTAGATTCCAAAGGAAAAAAACGTCAACATGAGCAAAAACACGTTGATACTCTTTATGGTCAACTTTGCGAGATTTGTGGTGAAAGATTCAAACATCAAGGAACTCTGGACCAGCATCAGAAGACGCAACACACGAGTTTGGAGAAGATTTATCAATGTCCGAAGTGTCCAAAAAAATTTGCTTTCAAACAAAAACTGAGCTTTCATCTAAAATCTGTTCACACTACTTTAAGAGCATATCTTTGCGAGGATTGCGGTGCGGATTTTAAGAATCCCGCGAGTTTAAGACATCATAGAATCAGAAAACATCAACCGGTTGGAAATAAGAGAGAATGTCCAGTTTGCAGAAAATTGGTGCCGTTTTACAGTTTGTCAAaacacatgcacacacacaaaGCTTACAGTATCCAGTGTCCACATTGCGACAAAATGTTCAAAAACAGCTCGACCTTGAAACAACATGTGAGAATTCACGAAGATCAAAGGCAGTTCCGTTGCGATACTTGCGGTGTTGGATTTAATCGGAGGGATGGTTTGAGGCTGCATTTGAGAGTGCACGAAAAAACTGGAAGTAGAGGGTTGAAAGAATGTTCCTGCCAAGTTTGTGGGGAAAAGTTCCCGAATCATTCAACTTTGGTAATTCACAGGAATAGAGAACATAAAGATGGAAAGCAGTATACGTGTCATATTTGTAATAGATCAATGATTTCAACGAGATCACTCGAGTGGCATATGTCGCATATTCATAACCAATTAGTACCAGGTATTACCCGCAACGAGTCTGGTTTGCTCGAAAAGAAACGGGTTTCCTGCTATCATTGCAATAAGACCTTTAAGACAGAGCTGATACTTCGtacacatattaaaaatacgCACATGGAAAAGGATCCATTGAAATGCACCGACTGTGAAGATATTTTTAACTCCGAAGTGCGTCTGCGTCATCATTTGATGGTCGTGCACAATCGTCTCGAGGGTACTTTGGCATGTCCTCACTGTCCAAAACGATTCGTGAATCAATTACGGCTAAAGACTCATATGATCTCCCATTCTGAGGAAAGACCATATACTTGCGAGATTTGTGGtttcaatttgaagacaaagaTTCAGCTGATTAAGCATCATCAAAATCGACACAGCGACGAGAGACCTTTGCAGTGCAAATACTGTCCTTGGCGATGTAAGCAAGTGAGTGCTCTCGTTTGTCACGAGCGTACGCATACCAATGAACGCCCATATTCATGCAGCGTGTGCCGGCAACGTTTTAAATATCTCGGCGATAAAAACAAGCATGAACGTCGTCACGAGAGTCTCGGTGGTTCAGGTTTCAAGCGTATTGTACCCGGAAGAAATCTTAAACAGAAGAATTCGAATCCGGCGTGCGTCAATTCCGACGTCGAATCTGATCAGGACGATATCGTCAAGCGCTCGGTGAGTCAACTGGATATGCATGTTACCGAAGAGCAATTCGAGGAAGGACAAATGGTTAAATTCGAAGAAGTTAAGTTTGAAAATGGAGAGCAATACGAACATGTGTATGAGCAGGAGTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACCGAGTTAATTATGAACATAGAAGATTCCAATATGTACACTGAAGAAGTTACGGCCGATAGTATAGAGTCTGGCGCAGAGATCATAACAGATGAAATTATAACGAATGATATTTTGCAATCTGGCACTGCGGTGGTGCTACAAAGCGAAGACGACTCTGGGAAGATTCAAGTGATACCCATACCAGTGGTGTTATCTCTGCCCGACTTGTCCGATGCAAACACTGAAGTTAATCTCCCAACCGCATCAATCATGTATAACAATTAG
Protein Sequence: MSNHEINKRDHNYSESKPQHANNSTSNTISKISQTGSVVGQIRDIDELKKIAPRVRLQDTESLNELTRISSLSNSKSQQNDISILERTRQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSSLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTTDNATKKVTSIDDSLIVKEDKQPSYSEIKPEYQLSSAIQQNPSLSSTEHVNQAIPENQIDDSVPKICAIFSLNESKMGQDFEIEKEMEKEKEEEEEEEEEEEEEEEEEEEEDKDTEEKEVTQVGGGIFEEVAEGEDEESIEEFDPEDPALLVDEEEEEKSLKTVYNYDMAADSYVRVEGNEGISVKSEVSQTSEGENQREGMWQPNILKRKLIPMISNNGGEDEIQSIVEKHKVQKLDTNSLLNMNNPSEEEGIMYVTVKGSKPNEILLVKVKKMDKLTEPKRAVVPVSADLKPVERFLKRYETLTKDFSSRRPDAREQIIEEQIEEYKKKREKVLGNQAAVTHTANETQKEVQEEDISIKSNFERTEEEMIVIKEEDEERETRKEEKMKDKEEEEMKEEEENEKQKEKEKMENDVKIEKGQERISDNTEEHLKLSRMKKLEETKRKKESLQKELDESCNEENLEKLAKVLEKTENLQEFLEYLKQRKIILARLKDEDIISLYEAQFSTTIKSSSKSLPDLVDTQHPSGLLFDLLSDEDNYLECDYCSETFPNCDLLEGHLKSHDYRILHCCDDCGEEFQTNKAKRNHNMLCVKKFICKYCEIVLDSKGKKRQHEQKHVDTLYGQLCEICGERFKHQGTLDQHQKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHLRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNREHKDGKQYTCHICNRSMISTRSLEWHMSHIHNQLVPGITRNESGLLEKKRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCTDCEDIFNSEVRLRHHLMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCKYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNLKQKNSNPACVNSDVESDQDDIVKRSVSQLDMHVTEEQFEEGQMVKFEEVKFENGEQYEHVYEQEYEETSREASEATELIMNIEDSNMYTEEVTADSIESGAEIITDEIITNDILQSGTAVVLQSEDDSGKIQVIPIPVVLSLPDLSDANTEVNLPTASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417783;
90% Identity: iTF_01477805;
80% Identity: -