Ccal008467.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cylloceria caligata
Gene Symbol
su(Hw)
Assembly
GCA_963942595.1
Location
OZ012703.1:90288332-90299864[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0014 0.29 13.1 0.6 1 20 33 52 33 54 0.95
2 13 7.7e-07 0.00015 23.4 0.7 1 23 130 153 130 153 0.96
3 13 0.00049 0.099 14.6 4.6 2 23 160 182 159 182 0.95
4 13 0.00043 0.086 14.8 2.6 1 21 188 208 188 209 0.94
5 13 5.4e-09 1.1e-06 30.2 1.8 1 23 220 242 220 242 0.99
6 13 8.3e-06 0.0017 20.2 1.0 2 23 252 273 251 273 0.97
7 13 0.00054 0.11 14.5 0.3 2 23 280 301 279 301 0.98
8 13 2.2e-06 0.00044 22.0 1.4 1 23 307 329 307 329 0.99
9 13 5.8e-06 0.0012 20.7 1.9 1 23 335 357 335 357 0.94
10 13 1.2e-05 0.0023 19.7 0.8 1 23 363 386 363 386 0.95
11 13 3.4e-08 6.8e-06 27.7 1.4 1 23 392 414 392 414 0.98
12 13 5.4e-08 1.1e-05 27.1 2.3 1 23 420 442 420 442 0.98
13 13 2.7e-05 0.0055 18.5 3.1 2 23 449 471 448 471 0.95

Sequence Information

Coding Sequence
ATGACAATTAGCTGTCGTTTCCACAAGTGGCCACGGAAAATGGAAAGCACAATGGATAATCAATCCGATGATCGTATCATTGGGTTGGCAACTAACTATCAATGTGTTACCTGCCATCGCATATTCCAAAACAAAAACATGCTGAAGGAACACCTAGATGTTTGCAGAGAAGAAGACGACAGCACACATCTTATTGAACTGAAAACGTTTGCACTTTACGATTCGGACAATTCAGAAGAATTTGATGACTCTGACTCTGATTTAATGAGTTCACGAGTTGCTGGGCCGCAAAATGATGCCAGTGGATCCACACCTATTCAACCAGTTGCCGACCATGAATGTCATTGCTGCGGTGAAGATTTAAAAACAGCTCATGAAGGAGGAAAATTTAAATGTCCCAATTGCGATCTCTCGTTCAAAAAGCGTTCATCTCTGGAAAGGCACACGATAGTTATTCACTGGCAGATTGAATCATGTACATGTAACGAGTGCGGGACTACCTTTTTTGATAAGAAATCGCTCGATAAACATCGATATACCACTCATTCCAACGCCAAGATTTACAAATGCGAACCTTGCGATAGATATTTTTCTCGTCGttatcatttgaatcgacacAAAATGCAGTCTGGTTGTCATGGTGCGATGCGCAGTTTCTACGAATGTCAAGTTTGCAACAAGTCCTTCACTCGGAAAGACAACTTGCGAGAACATTTACGAACGCATGCTGGTGTTCAACAGAGACAACAAAAACGTTGTCAACAGTGTCCAAAGAGATTTAGCAGCCCCCAACAACTCGTTATACACACTCGCATGCACAGCGGCGAACGACCAGTCAAGTGCGATTTATGTCCAAAGACATTTCTATCTGCACTGGCACTGAAAAAACATCGCCGAGTGCATACTGGCGAGAAGCCATTTCAATGCAAGGATTGCCAACGAAGGTTTGCTGCTCGTGAAACGTTGAATCGTCATCAACGAATACATACTGGTGAGAAGCCACATGTATGTCAATATTGCGGTAAATCTTTTATTCAAGCAGCTCAGCTGAAAGCCCATGTATTTCACCATACCGGAGAGAATGGCTTCTACTGCGACACGTGTGGCAAAGCATTTAATCGTAAGGCTAGATTAAATTTGCATATTAAATTTGCACACGAAGGAGCTATACCATTTCAGTGCAATGTCTGCGATAAATCATTTACTCGAAAAGAGGATTTGACGAAGCACACTCTCATTCATACTGGAATAAAACctcACAAATGTGACAAATGCGACAAAGCATTTGCCACTAAATCTTCGCTACAAGCTCATCTTAAGACTCACAGACGGGAACCTCCTCAGTCTTGTGCCGAATGCGGTCGAGCATTTAAACGTCACGATTGTCTTATGAGACATATAAGAGCCAGGCATCGAGACGTTCTCGAAGATGTGATGGCTGAAGCTGAAAAACGGCAATTGCAATCCCAATTACTCGATATTGCCTCTTCTGCTGCACTAAAAATACAAACTGGGGAGTCAAGCATCCTCACATCTGCTCAGTTACTCAAAGCTATCGCAGACCTTTTAACAATTCTTATCGAAGAAGAAACTTTACAGGTATTTGGTTGGCCCGAGGCTCCTATACAAGATGTCTTGGATGCTGTAATTAGACGATGTGGTCATCAACCAGCCACAGTCGACGATAGCGATCTAGCGTTCGAAGAAAGATTACGTCAGAATGTCAAACTTTTATTCACCGTTGTTATAGACGACGATAcagttaaaaatttattaacaactCAAACGGTAGATGAAGTTATCCTGCATCTATTAAGAATTTCAAAtccaaaaaaatga
Protein Sequence
MTISCRFHKWPRKMESTMDNQSDDRIIGLATNYQCVTCHRIFQNKNMLKEHLDVCREEDDSTHLIELKTFALYDSDNSEEFDDSDSDLMSSRVAGPQNDASGSTPIQPVADHECHCCGEDLKTAHEGGKFKCPNCDLSFKKRSSLERHTIVIHWQIESCTCNECGTTFFDKKSLDKHRYTTHSNAKIYKCEPCDRYFSRRYHLNRHKMQSGCHGAMRSFYECQVCNKSFTRKDNLREHLRTHAGVQQRQQKRCQQCPKRFSSPQQLVIHTRMHSGERPVKCDLCPKTFLSALALKKHRRVHTGEKPFQCKDCQRRFAARETLNRHQRIHTGEKPHVCQYCGKSFIQAAQLKAHVFHHTGENGFYCDTCGKAFNRKARLNLHIKFAHEGAIPFQCNVCDKSFTRKEDLTKHTLIHTGIKPHKCDKCDKAFATKSSLQAHLKTHRREPPQSCAECGRAFKRHDCLMRHIRARHRDVLEDVMAEAEKRQLQSQLLDIASSAALKIQTGESSILTSAQLLKAIADLLTILIEEETLQVFGWPEAPIQDVLDAVIRRCGHQPATVDDSDLAFEERLRQNVKLLFTVVIDDDTVKNLLTTQTVDEVILHLLRISNPKK