Basic Information

Insect: Netelia virgata
Gene Symbol: su(Hw)
Assembly: GCA_951802705.1
Location: OX637866.1:40551344-40554678[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0065 0.54 11.0 0.6 1 21 19 39 19 40 0.95

2 13 1.1e-05 0.00095 19.7 3.2 1 23 109 132 109 132 0.96

3 13 0.00017 0.014 16.0 2.1 2 23 139 161 138 161 0.96

4 13 0.0005 0.042 14.5 2.6 1 20 167 186 167 188 0.95

5 13 4.9e-09 4.1e-07 30.2 1.8 1 23 199 221 199 221 0.99

6 13 3.2e-06 0.00027 21.4 0.7 2 23 231 252 230 252 0.97

7 13 0.00021 0.018 15.7 0.7 2 23 259 280 258 280 0.98

8 13 2.7e-05 0.0023 18.5 5.7 1 23 286 308 286 308 0.99

9 13 7.2e-06 0.00061 20.3 1.2 3 23 316 336 315 336 0.96

10 13 1e-05 0.00086 19.8 0.8 1 23 342 365 342 365 0.95

11 13 1.7e-08 1.4e-06 28.5 1.4 1 23 371 393 371 393 0.98

12 13 1.7e-07 1.4e-05 25.4 1.9 1 23 399 421 399 421 0.98

13 13 2.1e-05 0.0017 18.8 3.0 2 23 428 450 427 450 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0065	0.54	11.0	0.6	1	21	19	39	19	40	0.95
2	13	1.1e-05	0.00095	19.7	3.2	1	23	109	132	109	132	0.96
3	13	0.00017	0.014	16.0	2.1	2	23	139	161	138	161	0.96
4	13	0.0005	0.042	14.5	2.6	1	20	167	186	167	188	0.95
5	13	4.9e-09	4.1e-07	30.2	1.8	1	23	199	221	199	221	0.99
6	13	3.2e-06	0.00027	21.4	0.7	2	23	231	252	230	252	0.97
7	13	0.00021	0.018	15.7	0.7	2	23	259	280	258	280	0.98
8	13	2.7e-05	0.0023	18.5	5.7	1	23	286	308	286	308	0.99
9	13	7.2e-06	0.00061	20.3	1.2	3	23	316	336	315	336	0.96
10	13	1e-05	0.00086	19.8	0.8	1	23	342	365	342	365	0.95
11	13	1.7e-08	1.4e-06	28.5	1.4	1	23	371	393	371	393	0.98
12	13	1.7e-07	1.4e-05	25.4	1.9	1	23	399	421	399	421	0.98
13	13	2.1e-05	0.0017	18.8	3.0	2	23	428	450	427	450	0.95

Sequence Information

Coding Sequence: ATGGGCAGCACAATGGATACCATAACTGATAGTATTATTCCAATTACCACGAATTATCAGTGCGTAACCTGCCAgcgtatttttcaaaataaaaatATGCTCAGCGATCATCTGAATTTCTGCAGAGAAGACGATAGCGCCGATGCTTTAGAACTGAGGACCTTCAACGATTACGATTCCGATAATTCCGAAGAATTCGAGGATTCTGAGACCGGAACGCAAAATCTTGACGACTCCAATGGCGCAACGTCTATTAAGCCTGTTGGCGAAAACGAGTGTCACTGTTGCGGCGAAGATTTGAAAACTGCTCATTCGGGCGGTCAATTCAAATGTCAGAACTGCGATCTGTGTTTCAAAAAACGCTCGTCCCTCGAACGACACACCATTGTCGTCCACTGGGAAATCGAATTGCAGACGTGCGACGATTGCGAATTGACCTTTCGCAACAAAAAATCTCTGGACAAACATCGATATACGACTCATTCCAATGCAAAGATTTACAAATGCGAACCCTGCGACAGATACTTCACACGTCGTTATCACTTAAATCGCCACAAACTGCAGTCTGGTTGTCACGGGGAGATACGCAATTTCTACGAATGTCAAGTTTGCAACAAATCCTTCACGCGAAAAGACAACCTCCGCGAACATTTACGTACGCACGCCGGAGTACCCCAGAGACAACAAAAATCGTGTCCCGAGTGCGACAAAAAATTCAGCACGTCTCAGCAACTTCTCATACACAGCAGAGTTCACAGTGGCGAAAGACCGGTCAAGTGCGATTTATGCccgaagacatttttttcgtcgctcgcGGTTAAAAAACACCGACGGGTTCATACCGGCGAGAAACCCTTTCAGTGCAAACATtgCCCACGTAAATTTGCCGCTCGCGAAACTCTGAACCGACATCACAGAACCCACACGGGTGACAGACCTCACGGCTGCCAATACTGCGGTAAATCTTTTATCCAATCTGCCCAGCTGAAAGCCCATCTCTTTCATCACACGGGAGAAAATGGATTTTACTGCGAAACTTGTGGAAAAGCTTTTAATCGCAAAGCGCGCCTTAATCTCCACATAAAATTTGCACACGAGGGTGCTATCGGCTTTCAATGCAACATTTGCGATAAATCTTTCACTCGCAAGGAAGATTTGACGAAACACACCCTCATACATTCTGGAATAAAGCCTCACAAATGCGACAAATGCGAGAAAGCTTTCGCAACAAAATCGTCACTGCAGGCTCATCTCAACACTCACAGACGCGAGCCACCTCAGTCTTGTACAGAATGCGGTCGCGCTTTTATCCGCCATGATTGTCTCATGCGACACATCAGGGCTAGACATCGCGATGTTCTCGAGTCTGTCATGGCAGAGGCGGAAAAACGGCAGTTGCAATCACAACTACTCGATATTGCGTCGTCAGCTGCGTTAAAAACTCAAACCGGCGAGTCGAGCGTTCTTTCCTCGTCTCAGCTACTCAAGTCTATCGCCGatcttctctcgattctcatTGAGGAAGAAACTTTGCAGATATTCGGATGGCCCGAAGCACCGATTCAAGATGTTTTGGACGCTGTTATTAGACGATGCGGCCATTTGCCGATTACAGTGAACGACAGTGAATTAACGTTTGAGGAACGTTTGCGCGAAAACGTCAAGATTCTTTTTACAGTCGTTATAGAGGATGAAACAGTTAAATCCCTCTTAACGACGCAGACCGTCGACGAAGTTATTTTGCATCTACTAAAAATGTCCAAATCATGA
Protein Sequence: MGSTMDTITDSIIPITTNYQCVTCQRIFQNKNMLSDHLNFCREDDSADALELRTFNDYDSDNSEEFEDSETGTQNLDDSNGATSIKPVGENECHCCGEDLKTAHSGGQFKCQNCDLCFKKRSSLERHTIVVHWEIELQTCDDCELTFRNKKSLDKHRYTTHSNAKIYKCEPCDRYFTRRYHLNRHKLQSGCHGEIRNFYECQVCNKSFTRKDNLREHLRTHAGVPQRQQKSCPECDKKFSTSQQLLIHSRVHSGERPVKCDLCPKTFFSSLAVKKHRRVHTGEKPFQCKHCPRKFAARETLNRHHRTHTGDRPHGCQYCGKSFIQSAQLKAHLFHHTGENGFYCETCGKAFNRKARLNLHIKFAHEGAIGFQCNICDKSFTRKEDLTKHTLIHSGIKPHKCDKCEKAFATKSSLQAHLNTHRREPPQSCTECGRAFIRHDCLMRHIRARHRDVLESVMAEAEKRQLQSQLLDIASSAALKTQTGESSVLSSSQLLKSIADLLSILIEEETLQIFGWPEAPIQDVLDAVIRRCGHLPITVNDSELTFEERLRENVKILFTVVIEDETVKSLLTTQTVDEVILHLLKMSKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00414496;
90% Identity: iTF_01057075; iTF_01056245;
80% Identity: -