Basic Information

Insect: Netelia melanura
Gene Symbol: su(Hw)
Assembly: GCA_964007305.1
Location: OZ023256.1:7692147-7695118[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0063 0.74 11.0 0.6 1 21 19 39 19 40 0.95

2 13 3.7e-07 4.3e-05 24.3 1.0 1 23 109 132 109 132 0.97

3 13 0.0002 0.024 15.7 1.7 2 23 139 161 139 161 0.96

4 13 0.00049 0.057 14.5 2.6 1 20 167 186 167 188 0.95

5 13 4.8e-09 5.6e-07 30.2 1.8 1 23 199 221 199 221 0.99

6 13 2.7e-06 0.00031 21.6 0.7 2 23 231 252 230 252 0.97

7 13 0.00021 0.024 15.7 0.7 2 23 259 280 258 280 0.98

8 13 2.6e-05 0.0031 18.5 5.7 1 23 286 308 286 308 0.99

9 13 5.9e-06 0.00069 20.5 2.9 1 23 314 336 314 336 0.95

10 13 1e-05 0.0012 19.8 0.8 1 23 342 365 342 365 0.95

11 13 2e-08 2.4e-06 28.3 1.7 1 23 371 393 371 393 0.98

12 13 1.7e-07 2e-05 25.4 1.9 1 23 399 421 399 421 0.98

13 13 2e-05 0.0024 18.8 3.0 2 23 428 450 427 450 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0063	0.74	11.0	0.6	1	21	19	39	19	40	0.95
2	13	3.7e-07	4.3e-05	24.3	1.0	1	23	109	132	109	132	0.97
3	13	0.0002	0.024	15.7	1.7	2	23	139	161	139	161	0.96
4	13	0.00049	0.057	14.5	2.6	1	20	167	186	167	188	0.95
5	13	4.8e-09	5.6e-07	30.2	1.8	1	23	199	221	199	221	0.99
6	13	2.7e-06	0.00031	21.6	0.7	2	23	231	252	230	252	0.97
7	13	0.00021	0.024	15.7	0.7	2	23	259	280	258	280	0.98
8	13	2.6e-05	0.0031	18.5	5.7	1	23	286	308	286	308	0.99
9	13	5.9e-06	0.00069	20.5	2.9	1	23	314	336	314	336	0.95
10	13	1e-05	0.0012	19.8	0.8	1	23	342	365	342	365	0.95
11	13	2e-08	2.4e-06	28.3	1.7	1	23	371	393	371	393	0.98
12	13	1.7e-07	2e-05	25.4	1.9	1	23	399	421	399	421	0.98
13	13	2e-05	0.0024	18.8	3.0	2	23	428	450	427	450	0.95

Sequence Information

Coding Sequence: ATGGGCAGCACAATGGATACCGTAACCGATAGTATTATTCCAATTACCACGAATTATCAGTGCGTAACCTGCCagcgtatttttcaaaataagaaTATGCTCAGCGATCATCTGAATTTCTGCAGAGAAGACGATAGCACCGATGCTTTAGAACTGAGGACCTTCAACGATTACGATTCTGATAATTCCGAGGAATTCGAGGATTCTGAGACCGGAACGCAAAATCTTGACGAGTCTAATGGCACAGCGTTAATTAAGCCTGTTGGCGAAAATGCGTGTCATTGTTGCGGCGAAGATTTGAAAACTGCTCACTCAGGTGGTCAATTCAAATGTCAGAACTGCGATCTGTCTTTCAAAAAGCGTTCGTCTCTCGAACGACACATGATTGTCGTACACTGGGAAATCGAATTACGTACTTGCGACGATTGCGAATTGACCTTCCGGGACAAAAAATCTTTGGACAAACATCGATACACGACTCATTCCAACGCAAAGATTTACAAATGCGAGCCCTGCGACAGATACTTCACGCGTCGTTATCACTTAAATCGCCACAAACTGCAGTCTGGTTGTCACGGGGAGATACGCAACTTCTACGAGTGCCAAGTTTGCAATAAATCCTTCACTCGAAAAGACAACTTGCGCGAACATTTACGAACGCACGCCGGAGTACCGCAGAGACAACAAAAATCATGTCCCGAATGCGACAAAAAATTCAGCACGTCTCAGCAACTTCTTGTACACAGCCGAGTTCACAGTGGCGAAAGACCGGTCAAGTGCGATCTGTGTCCAAAGACATTTTTCTCGTCCCTCGCAGTGAAAAAACACCGACGCGTTCATACCGGCGAGAAACCCTTTCAGTGCAAACACtGCCCACGTAAATTTGCTGCTCGCGAAACTCTGAATCGTCATCACCGTACCCATACGGGGGACAGACCTCACAGTTGTCAATACTGCGGTAAATCTTTTATCCAAGCTGCCCAGCTAAAAGCCCATCTGTTTCATCATACGGGAGAAAATGGATTTTACTGCGAAACTTGTGGAAAAGCTTTCAATCGCAAGGCACGCCTTAACCTCCACATAAAATTTGCGCATGAGGGTGCTATCGGCTTTCAATGCAAAATTTGCGATAAATCTTTCACTCGCAAGGAAGATTTGACGAAGCACACCCTCATACATTCTGGaataaaacctCACAAATGCGACAAATGCGAGAAAGCTTTCGCAACAAAATCGTCACTGCAGGCTCATCTCAACACTCATAGACGCGAGCCGCCTCAATCTTGTACGGAATGCGGTCGCGCCTTTATACGTCATGATTGTCTCATGCGACACATCAGAGCTAGACATCGCGACGTTCTCGAGTCCGTCATGGCAGAAGCGGAAAAACGACAACTTCAATCACAATTACTCGATATTGCATCGTCTGCTGCGTTAAAAACTCAAACTGGCGAGTCGAGCGTTCTCTCCTCGTCTCAACTACTCAAGTCTATCGCCGATCTTCTCTCCATTCTCATTGAGGAAGAAACTTTACAGATATTCGGATGGCCCGAAGCACCGATTCAAGATGTTTTGGACGCTGTTATCAGACGATGCGGCCATTTGCCGATTACAGTGAACGACAGTGAATTAACATTTGAGGAACGTTTGCGTGAAAATGTAAAGCTTCTTTTTACGGTCGTTATAGAGGACGAAACCGTCAAGTCACTGTTAACTACACAGACCGTCGATGAAGTTATTTTACATGTACTAAAAATGTCCAAATCATga
Protein Sequence: MGSTMDTVTDSIIPITTNYQCVTCQRIFQNKNMLSDHLNFCREDDSTDALELRTFNDYDSDNSEEFEDSETGTQNLDESNGTALIKPVGENACHCCGEDLKTAHSGGQFKCQNCDLSFKKRSSLERHMIVVHWEIELRTCDDCELTFRDKKSLDKHRYTTHSNAKIYKCEPCDRYFTRRYHLNRHKLQSGCHGEIRNFYECQVCNKSFTRKDNLREHLRTHAGVPQRQQKSCPECDKKFSTSQQLLVHSRVHSGERPVKCDLCPKTFFSSLAVKKHRRVHTGEKPFQCKHCPRKFAARETLNRHHRTHTGDRPHSCQYCGKSFIQAAQLKAHLFHHTGENGFYCETCGKAFNRKARLNLHIKFAHEGAIGFQCKICDKSFTRKEDLTKHTLIHSGIKPHKCDKCEKAFATKSSLQAHLNTHRREPPQSCTECGRAFIRHDCLMRHIRARHRDVLESVMAEAEKRQLQSQLLDIASSAALKTQTGESSVLSSSQLLKSIADLLSILIEEETLQIFGWPEAPIQDVLDAVIRRCGHLPITVNDSELTFEERLRENVKLLFTVVIEDETVKSLLTTQTVDEVILHVLKMSKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00414496;
90% Identity: iTF_01057819;
80% Identity: -