Cqui013722.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:163762362-163774055[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.04 1.5e+02 2.3 0.1 19 52 12 45 6 46 0.84 2 7 0.0013 4.8 7.1 0.0 22 49 43 70 40 73 0.85 3 7 0.0068 25 4.8 0.0 21 51 70 100 68 101 0.87 4 7 0.00045 1.7 8.6 0.1 21 46 98 123 94 131 0.89 5 7 0.001 3.7 7.5 0.0 21 52 130 161 124 163 0.88 6 7 0.00086 3.2 7.7 0.0 21 51 158 188 156 189 0.88 7 7 0.00038 1.4 8.8 0.3 21 46 186 211 184 220 0.89
Sequence Information
- Coding Sequence
- ATGCAAACGTCGCGAACACCCGGAATGAAGGTGTCCAGTTGCAGCAAGCCATTTCAGTGTACCGAGTGTGAGAAACAGTTCCGGCAGCTAAGCACACTAACCAACCACATGAAGATCCACACAGGAGATAAACCCTACAAATGCACAATCTGCGCGAAGGAGTTCCGGCAGACGACGACGCTTTCCAACCATGTGAAGATTCACACGGGGGAGAAACCGTTTCACTGCACATATTGTGGCAAACAATTCCGGCAGTTGAGCACCCTGTCGAATCATCTCAAAATTCACACTGGTGAAAAGCCCTACGAATGCTCAGTCTGTGGCAAGCAGTTCCGGCAGTCTAGTACGCTGAACAGCCACATCCGGATCCACTCGGACGACAAGTATTCTGTGAAACCCTTCAAGTGCAGCATGTGCCCCAAGGAGTTCCGCCAAACTACGACCCTGTCAAACCACCTGAAAATTCACACAGGTGAAAAGCCCTACGTTTGTACAtattgcaataaaagttttcggCAGACAGGGACGCTCTCAAACCATCTTAAAATTCATACTGGAGAAAAACCTTACGAATGTTCCGTTTGCCGGAAGCAATTCCGGCAGTCGAGCACGCTGAACTCGCACATCCGGATCCACGCGGATGACAAGCTAAGTAAACCCTCCCCTCCGGAGCTGCCCACTACGATGACCACTATCACGATGAAGCTGGAAGATATTAAACCGCTCTACACGATCATTTAA
- Protein Sequence
- MQTSRTPGMKVSSCSKPFQCTECEKQFRQLSTLTNHMKIHTGDKPYKCTICAKEFRQTTTLSNHVKIHTGEKPFHCTYCGKQFRQLSTLSNHLKIHTGEKPYECSVCGKQFRQSSTLNSHIRIHSDDKYSVKPFKCSMCPKEFRQTTTLSNHLKIHTGEKPYVCTYCNKSFRQTGTLSNHLKIHTGEKPYECSVCRKQFRQSSTLNSHIRIHADDKLSKPSPPELPTTMTTITMKLEDIKPLYTII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462352;
- 90% Identity
- iTF_00401958; iTF_00401899; iTF_00400791; iTF_00400859; iTF_00401374; iTF_00949061; iTF_01462924; iTF_01462352; iTF_00949465;
- 80% Identity
- iTF_00401958; iTF_00401899; iTF_00400791; iTF_00400859; iTF_00401374;