Snon034742.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010001689.1:423983-427949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.11 17 7.7 0.7 1 23 32 54 32 54 0.95 2 25 3.1e-05 0.0046 18.9 0.3 2 23 125 147 124 147 0.96 3 25 4.5e-05 0.0068 18.4 2.2 1 23 152 175 152 175 0.98 4 25 0.00025 0.038 16.1 1.8 1 23 179 202 179 202 0.94 5 25 0.15 22 7.3 0.3 2 23 205 227 204 227 0.95 6 25 0.036 5.5 9.3 0.1 2 19 233 250 232 253 0.94 7 25 0.0058 0.87 11.8 2.9 2 23 302 324 301 324 0.92 8 25 0.63 95 5.4 0.1 2 23 353 375 352 375 0.94 9 25 0.0039 0.59 12.3 0.0 1 23 397 420 397 420 0.92 10 25 3.2e-05 0.0049 18.9 0.9 1 23 425 448 425 448 0.95 11 25 0.0028 0.42 12.8 3.6 1 23 493 515 493 515 0.96 12 25 0.29 44 6.4 0.0 3 23 544 565 544 565 0.95 13 25 0.0047 0.71 12.1 0.8 1 23 585 608 585 608 0.96 14 25 3.7e-05 0.0056 18.7 0.5 1 23 613 636 613 636 0.96 15 25 0.074 11 8.3 0.6 1 23 641 664 641 664 0.96 16 25 0.0059 0.9 11.7 1.3 2 23 667 689 667 689 0.94 17 25 0.011 1.7 10.9 1.3 2 21 697 716 696 717 0.94 18 25 0.0038 0.57 12.4 1.7 1 23 772 795 772 795 0.94 19 25 0.85 1.3e+02 4.9 0.0 2 23 868 891 867 891 0.94 20 25 1.7e-05 0.0027 19.7 0.1 3 23 898 919 897 919 0.94 21 25 0.0031 0.47 12.6 2.8 2 23 924 946 923 946 0.94 22 25 0.0098 1.5 11.0 5.1 1 23 951 974 951 974 0.96 23 25 2.1e-05 0.0032 19.4 5.0 1 23 978 1001 978 1001 0.97 24 25 0.00025 0.038 16.1 0.3 2 23 1008 1029 1007 1029 0.96 25 25 8.9e-06 0.0013 20.6 0.6 1 23 1035 1057 1035 1057 0.98
Sequence Information
- Coding Sequence
- ATGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTACTCAACAATACAACGTTGATACCTTTTAAATGGCGCGGAAAATACCTGTGCTTTTATTGCGGGGACGATACTACGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGGCCGTGCAGTGATAGCGACAGAGCTATAAGACTagttaaatcagctgatatagaaattaaaatagATGTATCTGATGTTTCGTGCGAGATTTGTTTAGAAACTTTTCTCTTTATTgatgaaattattgaccattTGATTTTTAAACACCAATTACCTTATGCGAAAGACGTAGAAATGCTGCTGTCAGCTTACAGACTTTTAGATCTTCAGTGTCTCCTTTGTGATAAAACCTTCAATTATTTAAGTAAATTAATCAGCCATATGAACGTTGCTCATCCAAAGAACAGCTTTGAGTGTACCGAATGTAAAAAGAACTTTAATAAAAAGAGGGACTTGGATTCGCACATAAGAATGTATCATAAGAAATGCTATTGTTGTACGAAATGCGATGTAACATTTCCATCAAACTCCGCTTTACAGATTCATAGGTCTAACTCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTATTTGCGTCAGACGGCAAGCGGTTAGCTCATCAGAAATCCGACCATGATTCTAATCAGAACCAATGTGGTTTCTGCAATAAAGTTCTAACAACAAAACAAGCCTTTATAAGACATGCTGCCAATTGCGAATATAAACCTAAAGAAGAAACTGTTGTAATAGAAGACGACgaagaaaaaaaagtatccGTCAAAGAAATTAGAAAAACTTTAGCATGCATTTTTAACATGACGACCGCACTCCCTTTCAAATTCTTTATGAATAGGTTACGATGTTTCTATTGTACAAAAGACTTCACCTCATGCGAAGATCTAAAAGAACATACTTCGTTAGAACACCCTCACTGCGATATATCCTTTAAGTGTATGAGATTAAGGAACAGATATGATGGTGTACAAATCAAAGTTGATACTTCTTCTTTATCATGTAGACTATGCCAAATCAGTTTAGAGGATTTGAACGATTTAATTGACCATCTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTAGAGAGTAATCTGCAGCCATTCAAACTAATAAAAGACAACTACCCATGCCCTATTTGCGGGGAAGTCTACAGATATTTTGGCGTTTTACTCAAGCACGTCAGTGCTTCACATAGTGGCAATaagcatatatgtatgtactgcGGCAAAGCATTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGGCGTCATAAAATCGCTGATAATCACAAGTGCGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGAGACGCCGGAAAAACTTGAAAATACTGTTCAACCACACAACAATCATGCCATTTAAATGGCGAGGCAAATACCTTTGCTTCTACTGCGGTAAAAACTATACCGAATACAAAGAATTCAGAAAGCATACAAAATCTCACGGATTATGCACGACTAAAGATTACTCCCTCAAACTGATTAAAGGAAACAACATTGAAATTAAAATCGACGTCTCAGAAATTGGTTGTGAAATCTGCAATGAACCCTTCAGCGGATTCGAAGAAGTAATCGATCATTTGATCAGCAAACATAATAtggaatacaataaaaatattgatatacCGTTTCAGGAATATCGATTAGTCGATTTTCGGTGTTTGTATTGCGAAGAACAGTTTTCTTATTTCGGATATTTGGTTAAGCACGTTAACAACGTTCACCCGCAGAACTGTTTCATTTGTGATGATTGTGGAGTTACCTTCAACAAGAAAAGAGACTTGTCTATACATTTGAGGAATTATCATAGACAAGGAGGGTATCCATGTGATTTGTGCTTGAAGAACTTCGAAACTCGCCTTATACTGCGGAGGCATCAAAATAACATGCATTTTAGACAGTGCAAGTGCTGCGGTTTACGTTTCGCGTCTCTTTCGCTCCTCCAAAAACATGTACAAGTTGATCACCCCCAAAATGAGAGTAACATGAAGTGTAGTTACTGCTCCAAAGAGTTCCATACTTCTTTAGGTTTAAGGCAGCATATAAGCAAATGTAAGGTCAAAATAATTTCTCAAGTCGAACTACCCCACACCTCTTTTCTAAATGACAGTAACATAGAACccaagaaaaaacaaaatatagtaCAAATACGACAGAATATTCAGTGCGTACTCAATATGTCGACAGCTGTGCCTTTCAAAttcttttccaaatattcctgcTTTTATTGCTCAAAGAAATTCGTGGAATTTGACGAGTTACGTCAGCACACTAGCCTTGAACATCCTGTATGCGATCTGAAGTCTAAATGTATGAAGAAATGCAAAGGAGAGAGAATAGCAGTTAAAATTGACATATCTGCATTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGATGATTTAATCAATCACTTGATAAACGAACATAAGGCGAACTATGACACTGCAATTCCAGGGTGTTTAGAGCCTTTTCGGGTTATCAAAGACAATATGCCATGTCCCATATGTCCTGATACTGTCTTCCGATACTTCGGAATTTTGCTCCGacatatgaattccgaacacaGCAATAACAACAGAATTTGTGACTTCTGCGGTCGAAGCTTCAGGAACGCAGCGAATCTTAACGTGCATATAACCTATGCACACACAGGTTCCTGCGAATGTGATATTTGTGGTGTCAAATACAAGAATCAATGGTGTCTGGCGCGGCATAGAGCAAGAACACACGATGCGAAAGACCACAAATGTCCGAAATGTCCCGAGCAGTTCCAATCGCAGTaccataaacaaaaacactTAATAAAAATGCACAATGTCGGGCACAAGTGTAGTTACTGCGGGAAAATGTTTACCAGAAATTCTTTCATGAAAGATCACGTAAGGCGTACACATttgaaggaaaaaaatattccttGTTCCATTTGCAATGAGAAGTTCTTCGATAATTATCTTTTGAGGATGCATATGGTGAAACATGAGGGGGATAGGAAATTCAGTTGCACGGTTTGTGGAAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAAATGCATAAGAAGTATGGACATGTTCAGATGCAGATTTAA
- Protein Sequence
- MTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTTTPDRLRKHTKGHGPCSDSDRAIRLVKSADIEIKIDVSDVSCEICLETFLFIDEIIDHLIFKHQLPYAKDVEMLLSAYRLLDLQCLLCDKTFNYLSKLISHMNVAHPKNSFECTECKKNFNKKRDLDSHIRMYHKKCYCCTKCDVTFPSNSALQIHRSNSHSSTCNICFQVFASDGKRLAHQKSDHDSNQNQCGFCNKVLTTKQAFIRHAANCEYKPKEETVVIEDDEEKKVSVKEIRKTLACIFNMTTALPFKFFMNRLRCFYCTKDFTSCEDLKEHTSLEHPHCDISFKCMRLRNRYDGVQIKVDTSSLSCRLCQISLEDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKIADNHKCDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYKEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCEICNEPFSGFEEVIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLILRRHQNNMHFRQCKCCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVELPHTSFLNDSNIEPKKKQNIVQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRQHTSLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLDDLINHLINEHKANYDTAIPGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQMQI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- iTF_00375556;
- 80% Identity
- -