Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991988.1:4422717-4425089[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 2e+02 2.6 0.0 27 49 67 89 61 92 0.93

2 10 0.00084 10 6.8 0.0 25 46 96 117 93 122 0.88

3 10 8.2e-05 0.98 10.0 0.2 26 48 158 180 154 184 0.89

4 10 0.013 1.5e+02 3.0 0.3 27 50 188 211 182 213 0.90

5 10 0.057 6.8e+02 0.9 0.1 18 48 210 240 207 243 0.84

6 10 0.38 4.6e+03 -1.8 0.0 25 43 343 361 342 364 0.79

7 10 0.0018 21 5.7 0.0 26 49 417 440 392 445 0.84

8 10 3.9e-05 0.47 11.0 0.1 26 51 475 500 464 502 0.90

9 10 0.034 4e+02 1.6 0.2 27 48 505 526 503 528 0.87

10 10 0.021 2.5e+02 2.3 1.4 18 48 526 556 520 559 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	2e+02	2.6	0.0	27	49	67	89	61	92	0.93
2	10	0.00084	10	6.8	0.0	25	46	96	117	93	122	0.88
3	10	8.2e-05	0.98	10.0	0.2	26	48	158	180	154	184	0.89
4	10	0.013	1.5e+02	3.0	0.3	27	50	188	211	182	213	0.90
5	10	0.057	6.8e+02	0.9	0.1	18	48	210	240	207	243	0.84
6	10	0.38	4.6e+03	-1.8	0.0	25	43	343	361	342	364	0.79
7	10	0.0018	21	5.7	0.0	26	49	417	440	392	445	0.84
8	10	3.9e-05	0.47	11.0	0.1	26	51	475	500	464	502	0.90
9	10	0.034	4e+02	1.6	0.2	27	48	505	526	503	528	0.87
10	10	0.021	2.5e+02	2.3	1.4	18	48	526	556	520	559	0.87

Sequence Information

Coding Sequence: ATGCAGTCCTTAGACTACGTGTGCGATTATTGCGATCGCTCCTTCATCAGAAAATGTAACCTTGTGACGCACATTGAGAATTTTCATATAAACATCACGAGGTACTGCGAAATATGCGGAAAAACCTTCGGCAGAGCGGCAGCTTTGAAGATACATTTAAGCCAAGGACACAACAATCATGGACAAGGCTTACCCGAATGCGATCTGTGTGGACGAGTCTTTAAAAGAAAACAAAATATAGTATCGCACATGACGTCAAAACACTTCAGAATGTTGAAGACCTTCTCTACGTGTAACGTCTGCGATAAAACGTTCACAACGGATCGGAATTTAAAACGCCATAAGAATCAGTTGCACAACCCAAATGTGCAGTATCTTATTTGCGATTATTGCCAAAAAGTGTTCAAAGGAAAACAGTCGTTAATATCTCATATCAATTCAGTGCATAATCCCGTGGAAACAGATTACAATCAGTGCTTCTTGTGTGATAAAACGTTTTCGAGTAATCGGAACTTGAGACGGCATGTGGAAATGTTGCATGGTGAAAGGACTGAGTTTAAGTGTGATTTGTGTCCAAAAGTGTTCATGTGGCATCATAGTTTGAGACGACATACCCTGGCTAGGCATATGAGTGATAGTTTGGAACAGTTTAGTTGCAAATTTTGCGATAAAATATTTTACGGAAGGGAAAATGTAGAAAACCACCTCGCGTTGCATCATAAACCAGAAGCAGTGAACAAAACTGTGGCCAACGAATGTATGGCAATCAAAATCGGGCACCGTTGCGAATATTGTCAAAAGAAATTCGACGAAGAAACTCAATTACGGCAGCATGTGAAATCGGAGCATTCGTTTCAAGATTTTTACACGTACTGCAAGAAATCGTTGATGAATTTGAGTGCTAAAGAAAATGAGGGTAGAAACAAATTCGTTTTCTACAATTGCGAATTATGTACGGACGTTTTCACGTCCGTCTATGGGTTGAAAGACCACATGAAGGCGTGGCATGATGTGGATTACAGCTTGTCGACTTGTAACGTCTGTTTTAAGAAGTTCTACAGCAAGCAAGCAATAAGAGAACATCAGAAAATATGTCTACCGCCAAAAGGTGTGAAGAGTTGTGACAATTGTGACAAGCTGTTCACAGATCAATCGAGCTTAGAATTTCACCAGCGTATTTTCCATCCTCAAACTCAAATTCCCAAAGTCACATCGAGTGTAGACGATTCTAACTTAAATGGCTCGTTTAAATGTGCCCTGTGCAGCCGAGTGTACATGAACGATAGATCCTTAAAACATCACATCAAGTTAAATCACACTAACGAAACCATAGTACATTGCGAATTGTGCAGTAAAGTGTACAATAATAAGTATTATTTGGCTGCTCATATGAGAACGATACATTCTAACGACAAAATCTTTCAATGTGATTTGTGTGATAAGGTTTTTCGGAATAAACGTGGAATACGAAGGCATATAGTGTTTACACATATGGGCAAATCGCGATATAAGTGTATAGAGTGTGAGAGCTTGTTTAAAGAGAAACGTAGTTTGCGAAAGCATGTACGTTCGAAACACTCGCAATCGGATGTGTTTCCGCAGTGTCATATCTGTCAGAAGCGTTTTGAATCAGCCCAGTCATGTAAAGTGCATTTGAAATTGATGCATTCAGTCAATATGGATACATATCCCTGCCATATGTGCTCCATTTCGTTCAGTTCAAAGAAATCTCTAAATATCCACGTATCGAATAAACATTCGTCACAAGAACAGATCTTTAAATGTGATACTTGCAAATTAGTGTTCAATGGACAGCAAAGCTTTGATCAGCATAATGCGAACAGCTTGTGCAAAATGCACAAAATGCAGAAACTCTTGCCGCGTTGTATTATATGCGCAAAGGATTTCAGTGCGCGCAAAACTTTAAGGAGCCACATACGGAAATTCCACCCGGAATTTAACGTGGATGACTTAGCAAGATACGGTTCGGAACGACGTCTGTTTGTCGTAGAATGTGAAGACTGTTTACGGAATTTTAACGATGAAACATACTACGAACATTATCTAAAATTTAAACATTTACGTGATACAATCGTGTTCACGTGTGAATACTGTTCCGTGTCCTACAACTGTCTGGAATATTCGATTCAAAGATACAAAATGGCGCACGAAAAACTAAATACAAGTACGTTGATGTTGAGTGAGTTGTGTACGACCGAAATGAGTGAGGACTCGACTAGTTTGAGTGAGATTGAGTGTTCGAGGTATGAGGTGAAAACAGAACCTGTGGATTTTAGTACAGTATATGATATGGGATCTGGATATGAAATAATGACAGAGTGCGAAATTAAGGCTGAACCAATGTCTCCTTAA
Protein Sequence: MQSLDYVCDYCDRSFIRKCNLVTHIENFHINITRYCEICGKTFGRAAALKIHLSQGHNNHGQGLPECDLCGRVFKRKQNIVSHMTSKHFRMLKTFSTCNVCDKTFTTDRNLKRHKNQLHNPNVQYLICDYCQKVFKGKQSLISHINSVHNPVETDYNQCFLCDKTFSSNRNLRRHVEMLHGERTEFKCDLCPKVFMWHHSLRRHTLARHMSDSLEQFSCKFCDKIFYGRENVENHLALHHKPEAVNKTVANECMAIKIGHRCEYCQKKFDEETQLRQHVKSEHSFQDFYTYCKKSLMNLSAKENEGRNKFVFYNCELCTDVFTSVYGLKDHMKAWHDVDYSLSTCNVCFKKFYSKQAIREHQKICLPPKGVKSCDNCDKLFTDQSSLEFHQRIFHPQTQIPKVTSSVDDSNLNGSFKCALCSRVYMNDRSLKHHIKLNHTNETIVHCELCSKVYNNKYYLAAHMRTIHSNDKIFQCDLCDKVFRNKRGIRRHIVFTHMGKSRYKCIECESLFKEKRSLRKHVRSKHSQSDVFPQCHICQKRFESAQSCKVHLKLMHSVNMDTYPCHMCSISFSSKKSLNIHVSNKHSSQEQIFKCDTCKLVFNGQQSFDQHNANSLCKMHKMQKLLPRCIICAKDFSARKTLRSHIRKFHPEFNVDDLARYGSERRLFVVECEDCLRNFNDETYYEHYLKFKHLRDTIVFTCEYCSVSYNCLEYSIQRYKMAHEKLNTSTLMLSELCTTEMSEDSTSLSEIECSRYEVKTEPVDFSTVYDMGSGYEIMTECEIKAEPMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358825; iTF_00357854; iTF_01562162; iTF_01562423; iTF_01562168;
90% Identity: iTF_00358825; iTF_00357854;
80% Identity: iTF_00358825;