Ccro022827.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991988.1:4422717-4425089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 7.6e-06 0.0006 20.5 2.2 1 23 6 29 6 29 0.95 2 21 3.3e-05 0.0026 18.5 0.1 2 23 35 57 35 57 0.93 3 21 7.4e-05 0.0059 17.4 0.8 2 23 66 88 66 88 0.95 4 21 1.4e-05 0.0011 19.7 2.3 2 23 97 119 96 119 0.94 5 21 2.9e-05 0.0023 18.7 0.2 2 23 127 149 126 149 0.95 6 21 4.1e-06 0.00032 21.4 1.4 2 23 158 180 157 180 0.95 7 21 0.02 1.6 9.8 3.2 1 23 186 209 186 209 0.93 8 21 0.0014 0.11 13.4 1.4 1 23 217 239 217 240 0.95 9 21 0.00036 0.028 15.3 2.9 1 23 260 283 260 283 0.97 10 21 0.0061 0.48 11.4 0.2 1 23 313 336 313 336 0.96 11 21 0.016 1.2 10.1 0.7 2 21 344 363 343 364 0.94 12 21 0.00068 0.054 14.4 1.2 2 23 373 395 372 395 0.96 13 21 0.0083 0.66 11.0 2.3 1 23 416 439 416 439 0.97 14 21 7.9e-06 0.00062 20.5 0.8 3 23 447 468 445 468 0.96 15 21 4.3e-05 0.0034 18.1 0.9 1 22 474 495 474 497 0.91 16 21 0.094 7.4 7.6 1.9 1 23 503 526 503 526 0.96 17 21 0.09 7.1 7.7 4.7 2 23 534 556 534 556 0.95 18 21 0.0001 0.0083 16.9 1.9 1 23 563 586 563 586 0.94 19 21 0.16 12 6.9 0.5 1 19 593 611 593 613 0.93 20 21 0.039 3.1 8.9 1.2 3 23 629 650 628 650 0.92 21 21 4.2 3.3e+02 2.4 0.4 2 16 671 685 670 693 0.80
Sequence Information
- Coding Sequence
- ATGCAGTCCTTAGACTACGTGTGCGATTATTGCGATCGCTCCTTCATCAGAAAATGTAACCTTGTGACGCACATTGAGAATTTTCATATAAACATCACGAGGTACTGCGAAATATGCGGAAAAACCTTCGGCAGAGCGGCAGCTTTGAAGATACATTTAAGCCAAGGACACAACAATCATGGACAAGGCTTACCCGAATGCGATCTGTGTGGACGAGTCTTTAAAAGAAAACAAAATATAGTATCGCACATGACGTCAAAACACTTCAGAATGTTGAAGACCTTCTCTACGTGTAACGTCTGCGATAAAACGTTCACAACGGATCGGAATTTAAAACGCCATAAGAATCAGTTGCACAACCCAAATGTGCAGTATCTTATTTGCGATTATTGCCAAAAAGTGTTCAAAGGAAAACAGTCGTTAATATCTCATATCAATTCAGTGCATAATCCCGTGGAAACAGATTACAATCAGTGCTTCTTGTGTGATAAAACGTTTTCGAGTAATCGGAACTTGAGACGGCATGTGGAAATGTTGCATGGTGAAAGGACTGAGTTTAAGTGTGATTTGTGTCCAAAAGTGTTCATGTGGCATCATAGTTTGAGACGACATACCCTGGCTAGGCATATGAGTGATAGTTTGGAACAGTTTAGTTGCAAATTTTGCGATAAAATATTTTACGGAAGGGAAAATGTAGAAAACCACCTCGCGTTGCATCATAAACCAGAAGCAGTGAACAAAACTGTGGCCAACGAATGTATGGCAATCAAAATCGGGCACCGTTGCGAATATTGTCAAAAGAAATTCGACGAAGAAACTCAATTACGGCAGCATGTGAAATCGGAGCATTCGTTTCAAGATTTTTACACGTACTGCAAGAAATCGTTGATGAATTTGAGTGCTAAAGAAAATGAGGGTAGAAACAAATTCGTTTTCTACAATTGCGAATTATGTACGGACGTTTTCACGTCCGTCTATGGGTTGAAAGACCACATGAAGGCGTGGCATGATGTGGATTACAGCTTGTCGACTTGTAACGTCTGTTTTAAGAAGTTCTACAGCAAGCAAGCAATAAGAGAACATCAGAAAATATGTCTACCGCCAAAAGGTGTGAAGAGTTGTGACAATTGTGACAAGCTGTTCACAGATCAATCGAGCTTAGAATTTCACCAGCGTATTTTCCATCCTCAAACTCAAATTCCCAAAGTCACATCGAGTGTAGACGATTCTAACTTAAATGGCTCGTTTAAATGTGCCCTGTGCAGCCGAGTGTACATGAACGATAGATCCTTAAAACATCACATCAAGTTAAATCACACTAACGAAACCATAGTACATTGCGAATTGTGCAGTAAAGTGTACAATAATAAGTATTATTTGGCTGCTCATATGAGAACGATACATTCTAACGACAAAATCTTTCAATGTGATTTGTGTGATAAGGTTTTTCGGAATAAACGTGGAATACGAAGGCATATAGTGTTTACACATATGGGCAAATCGCGATATAAGTGTATAGAGTGTGAGAGCTTGTTTAAAGAGAAACGTAGTTTGCGAAAGCATGTACGTTCGAAACACTCGCAATCGGATGTGTTTCCGCAGTGTCATATCTGTCAGAAGCGTTTTGAATCAGCCCAGTCATGTAAAGTGCATTTGAAATTGATGCATTCAGTCAATATGGATACATATCCCTGCCATATGTGCTCCATTTCGTTCAGTTCAAAGAAATCTCTAAATATCCACGTATCGAATAAACATTCGTCACAAGAACAGATCTTTAAATGTGATACTTGCAAATTAGTGTTCAATGGACAGCAAAGCTTTGATCAGCATAATGCGAACAGCTTGTGCAAAATGCACAAAATGCAGAAACTCTTGCCGCGTTGTATTATATGCGCAAAGGATTTCAGTGCGCGCAAAACTTTAAGGAGCCACATACGGAAATTCCACCCGGAATTTAACGTGGATGACTTAGCAAGATACGGTTCGGAACGACGTCTGTTTGTCGTAGAATGTGAAGACTGTTTACGGAATTTTAACGATGAAACATACTACGAACATTATCTAAAATTTAAACATTTACGTGATACAATCGTGTTCACGTGTGAATACTGTTCCGTGTCCTACAACTGTCTGGAATATTCGATTCAAAGATACAAAATGGCGCACGAAAAACTAAATACAAGTACGTTGATGTTGAGTGAGTTGTGTACGACCGAAATGAGTGAGGACTCGACTAGTTTGAGTGAGATTGAGTGTTCGAGGTATGAGGTGAAAACAGAACCTGTGGATTTTAGTACAGTATATGATATGGGATCTGGATATGAAATAATGACAGAGTGCGAAATTAAGGCTGAACCAATGTCTCCTTAA
- Protein Sequence
- MQSLDYVCDYCDRSFIRKCNLVTHIENFHINITRYCEICGKTFGRAAALKIHLSQGHNNHGQGLPECDLCGRVFKRKQNIVSHMTSKHFRMLKTFSTCNVCDKTFTTDRNLKRHKNQLHNPNVQYLICDYCQKVFKGKQSLISHINSVHNPVETDYNQCFLCDKTFSSNRNLRRHVEMLHGERTEFKCDLCPKVFMWHHSLRRHTLARHMSDSLEQFSCKFCDKIFYGRENVENHLALHHKPEAVNKTVANECMAIKIGHRCEYCQKKFDEETQLRQHVKSEHSFQDFYTYCKKSLMNLSAKENEGRNKFVFYNCELCTDVFTSVYGLKDHMKAWHDVDYSLSTCNVCFKKFYSKQAIREHQKICLPPKGVKSCDNCDKLFTDQSSLEFHQRIFHPQTQIPKVTSSVDDSNLNGSFKCALCSRVYMNDRSLKHHIKLNHTNETIVHCELCSKVYNNKYYLAAHMRTIHSNDKIFQCDLCDKVFRNKRGIRRHIVFTHMGKSRYKCIECESLFKEKRSLRKHVRSKHSQSDVFPQCHICQKRFESAQSCKVHLKLMHSVNMDTYPCHMCSISFSSKKSLNIHVSNKHSSQEQIFKCDTCKLVFNGQQSFDQHNANSLCKMHKMQKLLPRCIICAKDFSARKTLRSHIRKFHPEFNVDDLARYGSERRLFVVECEDCLRNFNDETYYEHYLKFKHLRDTIVFTCEYCSVSYNCLEYSIQRYKMAHEKLNTSTLMLSELCTTEMSEDSTSLSEIECSRYEVKTEPVDFSTVYDMGSGYEIMTECEIKAEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00359140;
- 90% Identity
- iTF_00359140;
- 80% Identity
- iTF_00359140;