Basic Information

Insect: Zerene cesonia
Gene Symbol: -
Assembly: GCA_012273895.1
Location: JAAMXH010000039.1:494792-499974[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.68 1.1e+04 -3.5 0.1 26 48 83 105 78 106 0.75

2 11 0.0016 26 4.9 0.0 26 49 142 165 133 168 0.90

3 11 0.00013 2.1 8.4 0.0 25 48 172 195 169 198 0.90

4 11 4.4e-05 0.71 9.9 0.2 27 48 235 256 231 261 0.89

5 11 0.0079 1.3e+02 2.7 0.4 27 50 264 287 260 290 0.90

6 11 0.18 2.8e+03 -1.6 0.0 19 48 287 316 284 319 0.79

7 11 0.0015 24 5.0 0.0 26 49 493 516 470 521 0.86

8 11 1.1e-06 0.017 15.1 0.1 26 51 551 576 540 579 0.91

9 11 0.012 2e+02 2.1 0.2 27 48 581 602 578 608 0.88

10 11 0.28 4.6e+03 -2.3 0.4 26 48 610 632 595 634 0.67

11 11 0.59 9.5e+03 -3.3 0.0 19 32 663 676 650 679 0.64

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.68	1.1e+04	-3.5	0.1	26	48	83	105	78	106	0.75
2	11	0.0016	26	4.9	0.0	26	49	142	165	133	168	0.90
3	11	0.00013	2.1	8.4	0.0	25	48	172	195	169	198	0.90
4	11	4.4e-05	0.71	9.9	0.2	27	48	235	256	231	261	0.89
5	11	0.0079	1.3e+02	2.7	0.4	27	50	264	287	260	290	0.90
6	11	0.18	2.8e+03	-1.6	0.0	19	48	287	316	284	319	0.79
7	11	0.0015	24	5.0	0.0	26	49	493	516	470	521	0.86
8	11	1.1e-06	0.017	15.1	0.1	26	51	551	576	540	579	0.91
9	11	0.012	2e+02	2.1	0.2	27	48	581	602	578	608	0.88
10	11	0.28	4.6e+03	-2.3	0.4	26	48	610	632	595	634	0.67
11	11	0.59	9.5e+03	-3.3	0.0	19	32	663	676	650	679	0.64

Sequence Information

Coding Sequence: ATGCGTTACAAATGGATAGATGCTATGCACCGGTCGGACCTGATTGGTGATAGAACAACAGTGTACTGTTGTGAAGATCATTTCAAAaTTGAATTGGATATGGAGaactatgttaaatataaacttttcgGCGggagaattaaattaaaaaagggcACAGTTCCACACGCGTTTGAATGTCGGCGTGATAAAGAAGAGAAACTAGATGCGTCCGCAAACCAAaaacTGATGCAGCCACAAGACTTCGTTTGCGACTATTGCAGTCGCTCGTTCACCAGAAAATGCAACCTGGTAACCCACATTGAGAACTTCCACGTGAACGTCACTTGGTACTGCGAAATATGTGGCAAAACCTTCGGCAGAGCGGCAGCATTGAAGATCCATTTTAGCCAAGGTCACAACACGCAAGGACAAGGTCTGCCCGAATGCGACATTTGCGGTCGagtgtttaaaagaaaacagaaTATAATATCGCATATGACCTCAAAGCATTTCAGAATGTTGAAAACCTTCTCCACGTGCACCGTATGCGATAAGACATTCACAACGGATCGGAATTTGAAGCGGCACATCAATCAACTGCACAACCCCAACGTCCAATATCTCATATGCGATTATTGTCAGAAAGTGTTCAAGGGGAAACAGTCGTTAATATCCCATATAAATACGGTGCACAATCCGTTGGAAATGGATTACAATCAGTGTTTCTTGTGTGATAAAACATTCTCCAGCAATAGGAACTTGAGACGGCATGTTGAAATGTTGCACGGGGAAAGAACGGAGTTTAAATGTGATTTGTGTCCAAAAGTGTTCATGTGGCACCACAGTTTGCGGCGGCACACCCTAGCTAGGCATATGAGTGATAGTCTAGAACAGTTTCGTTGCAAATTctgtgataaaatattgtacgGAAGAGAGAATGTGGAGAATCACCTCGCAGTGTACCATAAACCGAAAGCCATAGACAAGTGCGTGTCCAACGAATGCATGGCGATAAAAATCGGACACCGCTGCGAGTATTGCCAGAGAATATTTGACGAGGAATCGCTGTTGCGGCAGCATGTCAAATCTGAGCATTCGTTTCAAGATTTCTACAGCTACTGCAAGAAATCTCTGTTGAATTTGAACGCTAAAGAGAACGAGGGTagaaacaaatttgttttctACAATTGCGAGTTGTGCACGGACGTTTTCACGTCCGTCTACGAGTTGAAAGACCACATGAAGGCGTGGCACGACGTGGACTACAGCCTGTCGACGTGCAATGTCTGTTTTAAGAAGTTTTTTAGCAAACATGCGATCACCGAACACCAGAAAACCTGCCTGCCCCCCGAAGGTGTGAAGAGCTGCGCAAATTGTGACAAGTTATTCACAGATCAATCGAGCCTCGAGTTCCACAATCGTATTTTCCATCCGCAAACGCAAATTCCCAAGATCACGTCCAGCGTCGACGATTCTAACATCAACGGGAGTTTCAAGTGCGACTTGTGCAGTCGGGTGTACATGAACGATCGATCGCTGAAACACCACGTGAAGCTGAATCACACAAACGAAACCGTAGTGCAGTGCGAGTTTTGCAATAAAGtgtacaacaataaatattatctcgCCGCGCACATGCGGACGGTGCACGCGGACGATAAAATGTTCCAGTGCGATTTGTGCGACAAAGTGTTTCGGAATAAGCGCGGGATACGCAGGCATATAGAGTTCACGCATATGGGCAAGTCTAGATACAAGTGCGTCGAGTGCGAGAGCCTGTTCAAGGAGAAACGCAGCTTGCGGAAGCATGTGCGATCCAAACACGCGCACTCGACCGTCTTCCCGCAGTGCCATGTGTGTTTGAAGCGTTTTGAATCGGCCAAATCGTGTAAAGTGCATTTGAAACTGCTGCATTCAGTCAACATGGACACGTATCCGTGCCACCTGTGCTCAATTTCGTTCAGCTCGAAGAAATCCCTGAAGATACACGTGTCGACGAAGCACTCGTCGAGGGAACAGATCTACAAATGCGACACTTGCAAGTCGGTATTCAACGGGCAGCTCAGCTTCGAACAGCACAACTCGAACGATAGCACGTGCAAAATGCAGAAAACGCAGAAGCTTGGGCCGCGCTGCATCATATGCGCGAAGGACTTCAGCGCGCGGAAAACGCTGCGGAGTCACATACGGAAATTCCATCCGGAATTCAACGTGGACGACTTGGCAAGATACGGCTCGGAGCGGAGGCTGTTTGTGGTTGAATGCGAGGATTGTTTGAGGAAGTTTAATGATGATGCCTATTACGAACACTATTTGAAGTTGAAGCATTTACGTGATACGATTGTATTCGAATGTGAACATTGCTCCGTGTCGTACAACTGCCTCGAATATTCGATACAGCGGTACAAAATGGCGCACGAAAAACTGAACACGAGCACGTTGATGTTGAGTGAGTTGTGTACGACGGAAATGAGCGAGGACTCGACGAGTTTGAGTGAGGTTGAGTGCTCTAGGTTCGAGGTGAAAACGGAATCCACGGGTTGCAGTCCGGTGCACGAAGTTACCGAATATGAGATAAAGACGGAGTGTGAAATCAAGTCTGAACCTATGTCTCCTTAA
Protein Sequence: MRYKWIDAMHRSDLIGDRTTVYCCEDHFKIELDMENYVKYKLFGGRIKLKKGTVPHAFECRRDKEEKLDASANQKLMQPQDFVCDYCSRSFTRKCNLVTHIENFHVNVTWYCEICGKTFGRAAALKIHFSQGHNTQGQGLPECDICGRVFKRKQNIISHMTSKHFRMLKTFSTCTVCDKTFTTDRNLKRHINQLHNPNVQYLICDYCQKVFKGKQSLISHINTVHNPLEMDYNQCFLCDKTFSSNRNLRRHVEMLHGERTEFKCDLCPKVFMWHHSLRRHTLARHMSDSLEQFRCKFCDKILYGRENVENHLAVYHKPKAIDKCVSNECMAIKIGHRCEYCQRIFDEESLLRQHVKSEHSFQDFYSYCKKSLLNLNAKENEGRNKFVFYNCELCTDVFTSVYELKDHMKAWHDVDYSLSTCNVCFKKFFSKHAITEHQKTCLPPEGVKSCANCDKLFTDQSSLEFHNRIFHPQTQIPKITSSVDDSNINGSFKCDLCSRVYMNDRSLKHHVKLNHTNETVVQCEFCNKVYNNKYYLAAHMRTVHADDKMFQCDLCDKVFRNKRGIRRHIEFTHMGKSRYKCVECESLFKEKRSLRKHVRSKHAHSTVFPQCHVCLKRFESAKSCKVHLKLLHSVNMDTYPCHLCSISFSSKKSLKIHVSTKHSSREQIYKCDTCKSVFNGQLSFEQHNSNDSTCKMQKTQKLGPRCIICAKDFSARKTLRSHIRKFHPEFNVDDLARYGSERRLFVVECEDCLRKFNDDAYYEHYLKLKHLRDTIVFECEHCSVSYNCLEYSIQRYKMAHEKLNTSTLMLSELCTTEMSEDSTSLSEVECSRFEVKTESTGCSPVHEVTEYEIKTECEIKSEPMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00359140;
90% Identity: iTF_01562162;
80% Identity: iTF_01562162;