Basic Information

Insect: Colias behrii
Gene Symbol: clz9
Assembly: GCA_029959075.1
Location: JARWMB010000012.1:2711702-2713840[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.1e-09 2.3e-06 28.1 0.0 1 39 16 55 16 59 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.1e-09	2.3e-06	28.1	0.0	1	39	16	55	16	59	0.90

Sequence Information

Coding Sequence: ATGGTCAGAAATTACAAGAAAAAGGGTACTAGGAGTGGAGAGGTAGACGAAGAGGCAATTTCAAAAGCTATCGATGAAGTCATACTTAAAAAAGTCTCTTTAAGAAAATCAGCAGCCAAGTATGGAGTTAATCCACAAACCTTACAAAGCCGCATCAAAAAGTTACGTAAAACACAAGATTTACATAGCGAAAATCGAGTTTTTGATTCTAAATTTGCATCGCAGCAAGTTTTAACAAAAATAGAAGAGGAacacttaaataaatacatcttGGAGTGTTCCAAAATGCACTATGGACTAACATGTGTCCAAGTTAAAAAACTGGCATATGAATTCGCTAAGGCCAATGAACTCAAATTTCCAGCAAGTTGGGATAGTAACAAAATGGCGGGAGCAGATTGGTTAGCAAGTTTCCGAAAACGCCATAAGAATTTAAGTTTGCGTAAACCAGAAAATACCAGCGCTGCAAGATCATTCGGGTTTAATAAAACGGCAGTGAATGATTTCTTCCAGAACCTGGAGAATGTATACCGCAAGCACAACTTTACTCCCGATCGGATTTTCAACTACGACGAATCTGGTATATCCACTGTGCTGAGCACACCGAAAATTTTAGCTGACAAATCCCAAAAACAAGTTGGTCAAATAGTGTCTGCCGAAAGAGGAGAACTGGTGACATTTGGTGGTATTATTTCGGCCAGTGGAAACACCATACCACCGTTATTCATCTTCCCTCGAGTACATTTTAAGGACCACTTTATAGAAGGTGCTCCAGAAGGCTCTTTAGGTGTAGCTACGAGAAGTGGATGGATAAATTCGAGCATTTTTGTTGATGTTATAAAGCACATTCAGAAACACACCTTATCTTCCAAAGAAAATCCGATATTGCTTTTATTAGACAACCATGAAAGTCACATTTCTATTGATGCCATAAACTACTGCCGGAATAATGGCATGGTGTGCCTTTCCTTCCCACCTCACACGACTCACCGCCTTCAACCATTAGACGTTGGAGTATTTGGGCCACTTAAATCTAAATTAAAAACATCATTCAATGACTGGCACGTTTCTAACCCGGGAAAAACACTTAACATCTACAATATCCCAAAACTCACAAAGATACCTTATTTAGAATCATTTAATGCAAGGAATATCACTAGGGCATTTGAAAAAACTGGAATATGGCCTTtcaataaattgatatttaatgATGAAGATTTTGCGCCAGTTCAAGTTTATCATTCTAATCCTTTAACGAATCGCAATGAAAATACAGCTGGTGAGGAGCAGCGTAGAATACCCGATAATGAGCTTGTTACAGTTAGCTATGAGCTCGCTGAAGTCAGTGGTGATGTTCCTGCTCGAACACCGCCGACTTTGTCTAGAGAGGTTTCGCCCTCACTACTTTCACAACCTCTTGTATTTATGGATTTTGATGAACCTACACCATCTACTTCGAAACAATTGAAGACGCCAGAAATGATAAGACCTTTCCCGAAAGTCCAAAGACGCAAACAAACGAGAAATGGTCGATCACTTGGAAAATCAAGGATTTATACCGACACGCCTGAGAAGACTAGAATTGAAGACTTGGAAAAAATCAAAGAGATGAAGAGATTAGAAAAAGAACGAAAAAGTAGAGCAAGGGAAATGAAAAAAGCATTGAGTTTATTAAATGAAGATTATGACAGATCAACTAAACCAAAAAGGAATAAAACCAAAGAGATTGAAACTGTTAGTAGCGACAGTGAAACAGATATCAGCCTGGGAGAAAGTTCTGCGTCACCTTTCGATGAACTTGAAGAAAACGAAGAAGAAGATGTTCGTGTAGAGCCTGTTGATCCTGAAAATGTCAAGGATGGGGCCTATGTTCTTGTTAAATTTGAGAAAAAGAAGTCTGTTATTTACTATGTCGGACAAATAATCAAACACTACAGTTTGACAGAAGTAATGGTTTCATTTTTGAGGAAAAAACCAGGACCTTCTATGAAATTTGTGTTTCCAGACGTCAAAGATGAAGGATCAGTAGATCTATTAGATATAGTTTTGATATTACCGGATCCTAAATCAGCTAAGACAGCTAGAACTGCTAGTATTTTAAGTTTTAGCAAAGATCTCTCTTTTTATAACGTCAATTAg
Protein Sequence: MVRNYKKKGTRSGEVDEEAISKAIDEVILKKVSLRKSAAKYGVNPQTLQSRIKKLRKTQDLHSENRVFDSKFASQQVLTKIEEEHLNKYILECSKMHYGLTCVQVKKLAYEFAKANELKFPASWDSNKMAGADWLASFRKRHKNLSLRKPENTSAARSFGFNKTAVNDFFQNLENVYRKHNFTPDRIFNYDESGISTVLSTPKILADKSQKQVGQIVSAERGELVTFGGIISASGNTIPPLFIFPRVHFKDHFIEGAPEGSLGVATRSGWINSSIFVDVIKHIQKHTLSSKENPILLLLDNHESHISIDAINYCRNNGMVCLSFPPHTTHRLQPLDVGVFGPLKSKLKTSFNDWHVSNPGKTLNIYNIPKLTKIPYLESFNARNITRAFEKTGIWPFNKLIFNDEDFAPVQVYHSNPLTNRNENTAGEEQRRIPDNELVTVSYELAEVSGDVPARTPPTLSREVSPSLLSQPLVFMDFDEPTPSTSKQLKTPEMIRPFPKVQRRKQTRNGRSLGKSRIYTDTPEKTRIEDLEKIKEMKRLEKERKSRAREMKKALSLLNEDYDRSTKPKRNKTKEIETVSSDSETDISLGESSASPFDELEENEEEDVRVEPVDPENVKDGAYVLVKFEKKKSVIYYVGQIIKHYSLTEVMVSFLRKKPGPSMKFVFPDVKDEGSVDLLDIVLILPDPKSAKTARTASILSFSKDLSFYNVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357389; iTF_01091714; iTF_01091713; iTF_00282243; iTF_00282244; iTF_00282245; iTF_00282248; iTF_00031866; iTF_01363051; iTF_01516267; iTF_01341135; iTF_01516178; iTF_00722975; iTF_00147268; iTF_01021125; iTF_01021131; iTF_01021132; iTF_01021133; iTF_01021135; iTF_00071378; iTF_00906076; iTF_00951773; iTF_01118242; iTF_01118243; iTF_01118244; iTF_00449039; iTF_00123316; iTF_00123318; iTF_00973722; iTF_00951775; iTF_01030141; iTF_00859393; iTF_01358814; iTF_00859392; iTF_01543840; iTF_01184415; iTF_01184450; iTF_01184424; iTF_01184413; iTF_01184410; iTF_01184412; iTF_01184414; iTF_01184447; iTF_00281135; iTF_01184416;
90% Identity: iTF_00951773;
80% Identity: -