Lcon023865.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- clz9
- Assembly
- GCA_949316025.1
- Location
- OX438930.1:18373744-18375885[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-09 3.4e-06 27.5 0.1 2 39 17 54 16 59 0.86 2 2 5.9 9.1e+03 -2.6 0.0 24 31 364 371 364 372 0.81
Sequence Information
- Coding Sequence
- ATGGTCAGAAATTACAAGAAAAAGGGAACTAGGAGTGGAGAGGTGGACGAACACGCAATATTAAAAGCTATTGATGAGGTTTTACAAAACAAACTCTCTTTAAGAAAATCAGCAGCCAAATATGGAGTTAATGCCCAAACACTACAAAGCCGTATCAAAAAAATACGCAAAACACAAGATCTTGATAGCGAAAATCGTGTGTTCGAATCTAAATTTGCATCACAGCAAGTTTTTACAAAAACAGAAGAGGAtcttttgaataaatatatctTAGAGTGTTCTAAGATGCACTATGGACTGACATGTATCCAAGTTAAAAACTTTGCATATGAATTTGCTAAGgccaatgaaattaaatatccAGCAAGTTGGGATAATAACAAGATGGCGGGAGCAGATTGGTTAGCAAGTTTCCGAAAACGCCATAAGAATTTAAGTTTGCGTAAACCTGAAAATACCAGCGCTGCTAGGTCATTCGGTTTTAACAAAACGGCAGTGAATGATTTCTTTCAGAACCTGGAGAATGTATACCGTAAACACAATTTTACTGCCGATCGGATTTTTAACTACGACGAATCTGGCATATCCACTGTGCTGAGCACACCGAAAATTTTGGCTGACAAAACCCAAAAACAGGTTGGTCAAATAGTGTCTGCCGAAAGAGGAGAACTGGTCACATTTGGTGGTATTATTTCAGCAAGTGGAAACACCATACCACCATTATTCATCTTCCTTCGAGTACATTTTAAGAACCACTTCATAGAAGGTGCTCCGGAAGGCTCTTTGGGTGTTGCCACGAGAAGTGGTTGGATAAATTCGAGCATTTTTGTTGATGTTCTAATGCACATTCAGAAACACACCTTATGTTCGAAAGAAAATCCAATATTGCTTTTATGTGACAACCATGAAAGTCACATTTCTATTAATGCAATCAACTACTGCCGTGACAATGGGATTGTGTGCCTTTCCTTTCCACCTCACACGACTCATCGCCTTCAACCATTAGATGTTGGAGTATTTGGACCACTAAAGTCTAAATTGAAAACAGCATTCAATGACTGGCACGTTTCCAACCCAGGAAAGAcacttaatatttataatatcccAAAACTAACAAAGATACCATATTTGGAGTCATTCAATGGTAGGAATATCACCAGTGCATATGAAAAAACCGGAATATGGCCTTTTAATAAGTTGATTTttaatgatgatgattttgCGCCAGTTCAGGTGTATCATTCTAATCCTATAACAAATAGTAATGAAAATATACGTGGTGAGGAGCTTGGAATACCTGGTAATGAGCCTGCTACAGTTAGTGCTGAGCTTGCTGTAGTTAGTGGTGATGTTCCTGCTCGAACACCACCGACTTTGTCCAGAGATGTCTCGCCTTCATTGCTTTCACAACCTCTTGCATTAACAGTGATGGATTTTGGTAACCCTTCACCATCTACTTCCAAAGTATTGAAGACACCAGAAATGATAAGGCCTTTCCCGAAAGTTCAAAGACgcacacaaacaaaaaaaggTCGATCACTTGGAAAATCAAGGATTTATACAGACACGCCTGAAAAGACTAGAATtgaagacttggaaaaaaacaAAGAGATGAAGAGATTAGAAAAAGAACGAAAAAGTAAAGCAAGAGAAATGAAGAAAGCGTTGAGTTTATTAAATGAAGATTATGAAAAATCAAGTAAACCAAAAAGGAATAAAACCAAAGATATTGAAACAATTAGTAGCGACAGTGAAACAGATATCAGCCTAAGAGAAAGTTCTGCTTCACCTTTCGACGTGCTTGAAGAAAACGAAGAAGCAGATGTACATGAAGAGCCTGTTGACCCTGAAAATGTCAAGGATGGTGCCTATGTGCTtgtaaaatttgaaaaaaagaaGTCTGTTATCTACTATGTCGGACAAATAATCAAACATTACAGTTTGACAGAAGTAATGGTGTCATTTTTGAGGAAGAAACCAGGATCGTCTATGAAATTTGTATTTCCAGACGTCAAAGACGAAGGATCAGTAGATCGATCAGatatagttttaatattatcgGATCCTAAATCGGCTAAGACAGCTAGGACTGCtagtattttaagttttgataaAGATCTCTCTTTTTATAATGTCCATTAA
- Protein Sequence
- MVRNYKKKGTRSGEVDEHAILKAIDEVLQNKLSLRKSAAKYGVNAQTLQSRIKKIRKTQDLDSENRVFESKFASQQVFTKTEEDLLNKYILECSKMHYGLTCIQVKNFAYEFAKANEIKYPASWDNNKMAGADWLASFRKRHKNLSLRKPENTSAARSFGFNKTAVNDFFQNLENVYRKHNFTADRIFNYDESGISTVLSTPKILADKTQKQVGQIVSAERGELVTFGGIISASGNTIPPLFIFLRVHFKNHFIEGAPEGSLGVATRSGWINSSIFVDVLMHIQKHTLCSKENPILLLCDNHESHISINAINYCRDNGIVCLSFPPHTTHRLQPLDVGVFGPLKSKLKTAFNDWHVSNPGKTLNIYNIPKLTKIPYLESFNGRNITSAYEKTGIWPFNKLIFNDDDFAPVQVYHSNPITNSNENIRGEELGIPGNEPATVSAELAVVSGDVPARTPPTLSRDVSPSLLSQPLALTVMDFGNPSPSTSKVLKTPEMIRPFPKVQRRTQTKKGRSLGKSRIYTDTPEKTRIEDLEKNKEMKRLEKERKSKAREMKKALSLLNEDYEKSSKPKRNKTKDIETISSDSETDISLRESSASPFDVLEENEEADVHEEPVDPENVKDGAYVLVKFEKKKSVIYYVGQIIKHYSLTEVMVSFLRKKPGSSMKFVFPDVKDEGSVDRSDIVLILSDPKSAKTARTASILSFDKDLSFYNVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357390;
- 90% Identity
- iTF_00859392;
- 80% Identity
- -