Basic Information

Gene Symbol
nfxl1
Assembly
GCA_947507545.1
Location
OX382180.1:2282788-2286228[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.1 1.2e+04 -3.2 1.1 15 19 125 129 124 129 0.81
2 21 0.21 2.4e+03 -1.0 0.8 4 10 160 166 159 166 0.94
3 21 6.3e-08 0.00072 19.9 16.9 1 19 174 191 174 191 0.99
4 21 0.56 6.4e+03 -2.3 1.0 6 10 217 221 216 221 0.89
5 21 1.8e-06 0.021 15.2 14.7 4 19 230 245 228 245 0.94
6 21 0.56 6.4e+03 -2.4 1.1 9 14 251 256 249 256 0.76
7 21 0.39 4.5e+03 -1.8 0.1 6 10 270 274 270 276 0.88
8 21 0.008 91 3.6 12.2 1 19 280 299 274 299 0.88
9 21 4.1e-05 0.47 10.9 9.2 1 18 335 352 335 353 0.97
10 21 0.012 1.3e+02 3.0 8.0 1 12 387 398 387 398 0.94
11 21 1.9 2.1e+04 -4.0 1.3 6 10 408 412 408 412 0.96
12 21 3.6e-07 0.0041 17.5 16.5 1 19 418 436 418 436 0.94
13 21 0.58 6.6e+03 -2.4 1.0 5 10 464 469 464 469 0.94
14 21 0.00051 5.8 7.4 11.5 9 19 484 494 482 494 0.90
15 21 0.00051 5.8 7.4 6.4 1 12 504 514 504 514 0.95
16 21 0.86 9.8e+03 -2.9 5.8 14 18 547 551 547 552 0.89
17 21 1 1.2e+04 -3.2 0.3 9 12 569 572 568 572 0.80
18 21 0.00021 2.5 8.6 4.6 1 12 588 599 582 599 0.91
19 21 0.57 6.5e+03 -2.4 1.4 6 10 616 620 615 620 0.88
20 21 0.00012 1.4 9.3 11.9 4 19 630 645 628 645 0.91
21 21 5e-05 0.58 10.6 10.9 1 16 690 704 690 710 0.89

Sequence Information

Coding Sequence
ATGCGGAAATTTAAGAGGGTTCAGGCCCAAAATCAGGCCTCGATCGAGAAGCATCTGGAGGCCAATCCACTGGACTCCTCCAGCGACGAAGAAAACGAGGCGAGCAATGACGTACTCCAACAGGCGGTCACCAAAGTGCTCTCGTCTTATCAGGGCGAAGGCGGAGATGCGGAGAAGTCTCTGTCCTACTTGACGGACACCTTCCAATCGGGAGGAGCCATTTGTCTCATCTGCATTTCCTCTGTGAAGAAAACGGAAGCGATTTGGAGCTGTTCGACATGTTATTCATTCATGCATTTGCCATGCATCCAACACTGGATAAGAGACAGTCTGAGTTACAAGCAAGAGAAGGGAATAACTCCGTTGTGGGCCTGCCCAAAATGCCGCAAGGAGTACCAAGAGGACGAGACCCCGAAGCGTTATCTCTGTTTCTGCGGCAAAACGAGCGATCCGCCTTATCAGCCTTGGACGATTCCGCATTCGTGCGGCGAAAAATGCGAAAAACCGTTGCAACCGCTTTGCGGTCATCGTTGCGTCCTCCTGTGTCACCCGGGACCGTGTCCACCGTGCCCAAAAATGGTGCGGGTCGCTTGTTTCTGCGGGAAAGAATCGCCGCAGCCGCGTCGTTGCAACGCGAAGGAGTGGAGTTGTCAAAAAATCTGCTCGAAGCCTCTTCCGCACTGCGACCATCGTTGCGGTGAGGAATGTCACTCCGGGGATTGTCCTCCCTGTTCAAAAATCCTCTCGGTCCCTTGCCACTGCGGCAATAAAACCGAGGAACGTCCTTGCAACCAATCGAACTGGTTCTGCGAGAAGCCCTGCGGCAATCGGCTCTCGTGCAACGTCCACGTGTGCGAAGGTCGTTGTCACCGAGCTGGCGATTGCGGCGAGTGTTCTCTCGCGAAAAATCGCACTTGCCCGTGCGGAAAAAAGCGCTACGAAGTTTCGTGCAAGCTCCGAAACGTCCCAACTTGCGGCGACACTTGCGGCAAATTACTGGACTGCGGTTCGCACTATTGCAACATGCGTTGCCACACAGATCGTTGCGGTCAGTGCCTCGAGGTCTCCACGAAGACCTGCCGATGTCGCAGCTACGAAAAGGAAATCGCGTGCGCCAAGGAATTTCACTGCAACAAGAAATGCACGCAAATGCGCCTGTGCGGCAAGCACTTGTGCAACAAAAAATGCTGCGACTGCCTTTTGCGAAACAACTTCAACGTGTGCGAGAAAATATGCGACAATACGTTGAATTGCCAGAAGCACAAATGCCCTGCGCCCTGTCACAGTGGACCTTGTTATCCCTGCCCTCGCACTAATGTCATTCAATGCCGCTGCGGCAACAGCAAAATCACCATTCCCTGCGGTAGAATAAAGCGCATAAAGCCCCCGAAATGCAACAAACTCTGCAAAATACCGCCCGTTTGTCATCATCCGAAGAGAGAGTCGCACAAATGTCATCACGGGCCTTGTCCACCTTGCAGAAAGGTTTGCGCTTTGGTGCACAAGAAATGTGGACATTCTTGTCCCGCGGTTTGTCATACCAAGGTCTGGGTCAAGGTCAAGGCGAACGGCGTGGCCGCGCAGACCGGCGGAGGATTTTTCGACGCTCCGAAGGAGAGAATGCAGCTCAAGACGCTTCCGTGTCCGCCCTGCGAGGTTTCCATCATGGTCACTTGCTTGGGAGGCCACGAGACCCTTCCTCTCCCCTGTCACAAGGCCGTTTCCGCTTCCTGTCAAAGAGAATGCGGACAGATGCTCGGGTGCACGAATCACAGTTGCGAAATGGTTTGTCACAAGGTTTTCGTTATGGGAGAAACGGGGGAGGAGAGAAAGACTTGCATGGAGTGCGAAAGACCCTGCAAACTACCCAGACCCGCCGGATGTACACACCTTTGTCCCAGAGTTTGCCACAAAGCTCCTTGCTATCCCTGCAAACAGCTCGTCAAAGTCGCTTGCCACTGCGGCATCAATTCGCTGTACAAAAGGTGCGCGGAATTGACCTCAGCGGACGATCGGAAACGCGACGAGATTCTCAAGTGCGGCAATCAATGCCCTAAGAATTATCCATGTGGCCATCGTTGCGTGGAGAATTGTCATTCCGGAGTCTGTCCGAATCCCGAGGCATGCAACAAGAAGGTGAAGGTTTGGTGCAAGTGCAAACGAATCAAGAAAGAATTTCCTTGCGCCGATTTGCGGAAGGGGAGTGTAATTGTGGACTGCGACAGCGCCTGTCGAAAGATCAAAGAAGAGCAGGAGCGAATTCGCGAGATCGAAGCTGCGAGAAAGCGCAAAGAGGAGGAGGCGCGCAATCAGATGGAAGTGGAGAGATTCGAGAGGAAATTTAAGCCTCGGCGCAAAGGCAAAGGGAGATCGCAGTCGAGCGACGATCTCAACAAGGACCGAAGCTCGTTATTCAAAATTTTCGGTGCGCTCGTTGTGCTTTTGGTGGCGATAGCTCTCGCTGTTTTTTACACCACTGAACGAATTTAA
Protein Sequence
MRKFKRVQAQNQASIEKHLEANPLDSSSDEENEASNDVLQQAVTKVLSSYQGEGGDAEKSLSYLTDTFQSGGAICLICISSVKKTEAIWSCSTCYSFMHLPCIQHWIRDSLSYKQEKGITPLWACPKCRKEYQEDETPKRYLCFCGKTSDPPYQPWTIPHSCGEKCEKPLQPLCGHRCVLLCHPGPCPPCPKMVRVACFCGKESPQPRRCNAKEWSCQKICSKPLPHCDHRCGEECHSGDCPPCSKILSVPCHCGNKTEERPCNQSNWFCEKPCGNRLSCNVHVCEGRCHRAGDCGECSLAKNRTCPCGKKRYEVSCKLRNVPTCGDTCGKLLDCGSHYCNMRCHTDRCGQCLEVSTKTCRCRSYEKEIACAKEFHCNKKCTQMRLCGKHLCNKKCCDCLLRNNFNVCEKICDNTLNCQKHKCPAPCHSGPCYPCPRTNVIQCRCGNSKITIPCGRIKRIKPPKCNKLCKIPPVCHHPKRESHKCHHGPCPPCRKVCALVHKKCGHSCPAVCHTKVWVKVKANGVAAQTGGGFFDAPKERMQLKTLPCPPCEVSIMVTCLGGHETLPLPCHKAVSASCQRECGQMLGCTNHSCEMVCHKVFVMGETGEERKTCMECERPCKLPRPAGCTHLCPRVCHKAPCYPCKQLVKVACHCGINSLYKRCAELTSADDRKRDEILKCGNQCPKNYPCGHRCVENCHSGVCPNPEACNKKVKVWCKCKRIKKEFPCADLRKGSVIVDCDSACRKIKEEQERIREIEAARKRKEEEARNQMEVERFERKFKPRRKGKGRSQSSDDLNKDRSSLFKIFGALVVLLVAIALAVFYTTERI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2