Tlin010759.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- nfxl1
- Assembly
- GCA_949699805.1
- Location
- OX453039.1:3309061-3316925[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1 1.7e+04 -3.2 1.1 15 19 125 129 124 129 0.81 2 19 0.21 3.3e+03 -1.0 0.8 4 10 160 166 159 166 0.94 3 19 6.3e-08 0.00099 19.9 16.9 1 19 174 191 174 191 0.99 4 19 0.56 8.8e+03 -2.3 1.0 6 10 217 221 216 221 0.89 5 19 4.4e-07 0.0069 17.2 13.4 4 19 230 245 228 245 0.94 6 19 0.56 8.9e+03 -2.4 1.1 9 14 251 256 249 256 0.76 7 19 0.0053 84 4.1 10.6 3 19 282 299 280 299 0.91 8 19 4.1e-05 0.65 10.9 9.2 1 18 335 352 335 353 0.97 9 19 0.012 1.8e+02 3.0 8.0 1 12 387 398 387 398 0.94 10 19 1.9 2.9e+04 -4.0 1.3 6 10 408 412 408 412 0.96 11 19 3.6e-07 0.0056 17.5 16.5 1 19 418 436 418 436 0.94 12 19 0.58 9.1e+03 -2.4 1.0 5 10 464 469 464 469 0.94 13 19 0.00051 8.1 7.4 11.5 9 19 484 494 482 494 0.90 14 19 0.00051 8 7.4 6.4 1 12 504 514 504 514 0.95 15 19 0.86 1.4e+04 -2.9 5.8 14 18 547 551 547 552 0.89 16 19 0.00021 3.4 8.6 4.6 1 12 588 599 582 599 0.91 17 19 0.78 1.2e+04 -2.8 1.7 6 10 616 620 615 620 0.88 18 19 0.00011 1.8 9.5 12.1 3 19 629 645 628 645 0.91 19 19 7.5e-05 1.2 10.0 11.9 1 16 690 704 690 710 0.89
Sequence Information
- Coding Sequence
- ATGAGGAAATTTAAGAGGGTTCAGGCCCAAAATCAGGCTTCGATTGAGAAGCACCTGGAGGCAAATCCACTGGATTCCTCCAGTGATGAAGAAAACGAAGCGAGCAATGAAGTTCTACAGCAGGCAGTCACAAAAGTCCTCTCGTCTTACGAAGGCGAAGGTGGAGATGCGGAAAAGTCTCTGTCTTACTTGACAGACACTTTCCAATCAGGAGGAGCCATTTGTCTCATCTGCATTTCCTCTGTGAAGAAAACTGAAGCGATTTGGAGCTGTTCAACATGTTATTCATTCATGCATTTACCATGCATTCAACACTGGATAAGAGACAGTCTAAGTTACAAGCAAGAAAAGGGAATAACTCCATTATGGGCCTGCCCAAAATGCCGCAAGGAGTACCAAGAGGACGAGATACCAAAGCGTTATCTCTGTTTCTGCGGCCAAACGACTGACCCGCCGTATCAGCCGTGGACAATTCCTCATTCCTGTggcgaaaaatgtgaaaaacctTTACAACCACTTTGCGGTCATCGTTGTGTCCTCCTATGTCACCCAGGTCCCTGTCCTCCTTGCCCAAAAATGGTCCGCGTTGCTTGTTTCTGCGGCAAACAATCGCCGCAGCCGCGTCGCTGTAACGCTAAAGAGTGGAGTTGTCAAAAAATCTGTTCGAAGCCTCTTCCCAATTGCGATCATCGCTGTGCCGAGGAATGTCACCGCGGTGATTGTCCCCCTTGCTCAAAAATCCTCTCAGTCCCTTGTCACTGCGGAAATAAAACCGAAGAACGTCCTTGCAACCAATCAAACTGGTTTTGCGATAAGCCCTGTGAAAATCGTCTCTCCTGCAAGGTTCACGTGTGCGAAGGTCGTTGTCACAGGGCTGGCGATTGCGGGGAATGTTCCCTCGCGAAAAATCGCACTTGCCCCTGCGGAAAAAAGCGCTACGAAGTTTCCTGCAAACTCAAGAATGTCCCAACGTGCGGCGACACTTGCGGCAAATTACTCGACTGTGGTTCGCACTATTGCAACATGCGTTGTCACACGGATCGTTGCGGCCAATGCCTCGAGGTCTCCACGAAGACCTGCCGCTGTCGCAGCTACGATAAGGAAATCGCCTGCGCGAAAGAATTTCATTGCAACAAGAAATGCACGCAAATGCGTTTGTGTGGCAAACATTTgtgcaacaaaaaatgttgcgaCTGCCTTTTGCGCAATAATTTCAATGTGTGCGAGAAAATATGCGACAATACGTTGAATTGCCAGAAACACAAATGTCCTGCGCCCTGTCACAGTGGACCTTGCTATCCCTGTCCTCGCACTAACGTTATTCAATGCCGTTGCGGTAACAGCAAAATTACCATTCCTTGCGGTAGAATCAAGCGCATTAAGCCGCCGAAATGCAACAAACTCTGCAAAATACCACCGGTTTGCCATCATCCAAAGCGTGAATCGCACAAATGTCATCATGGGCCTTGTCCGCCTTGCAGAAAGGTTTGCGCTTTGGTGCACAAAAAATGCGGACATTCTTGTCCCGCGGTTTGCCATACCAAGGTTTGGGTCAAAGTTAAAGCCAACGGCGTCTCCTCGCAAACTGGCGGAGGATTTTTTGACGCTCCGAAGGAGAGAATGCAACTCAAGACGCTTCCGTGTCCGCCTTGCGAGGTTTCCATCATGGTTACTTGTTTAGGAGGTCACGAGACTCTTCCCTTGCCTTGTTACAAGGCTATTTCTGCTTCGTGCCAGAGAGAATGCGGACAAATGCTCGGATGCACGAATCACAGTTGCGAAATGGTTTGCCATAAAGTTTTCGTCAAGGGAGAAACGGAAGAGGAAAGGAAGACTTGCATGGAGTGTGAAAAGCCCTGTAAACTCCCCAGGCCGGCCGGATGCACACACGTTTGTCCTAGAGTTTGTCATAAAGCTCCTTGTTATCCATGCAAACACCTTGTCAAAGTCGCTTGCCACTGCGGCATCAATTCGCTGTACAAAAGGTGCGCGGAATTGACTTCGGCTGATGATCGGAAACGGGACGAGCTTCTGAAGTGCGGCAATCAATGTCCTAAAAATTATTCGTGTGGCCATCGTTGCGTGGAGAATTGTCATCCAGGAGTCTGTCCAAACCCCGAGGCTTGCAACAAGAAGGTGAAGGTTTGGTGCAAGTGCAAAAGAATCAAGAAAGAATTTCCTTGCGTGGTTTTGCGGAAAGGAAGTGTGACTGTAGACTGCGACAGCGCCTGTCGAAAGATCAAAGAAGAGCAGGAGCGACTTCGCGAGATCGAAGCTGCAAGAAAGCGCAAAGAGGAAGAGGCTCGCAATCAGATGGAAGTCGAGAGATTTGAGAGGAAATTTAAGCCGCGACGCAAAGGCAAAGGGAGATCGCAATCGAGCGACGATCTCAATAAGGACAGAagctcttttttcaaaatttttgttgccGTTGTCGTCCTTTTGTTGGCGATAGCCTTCGCCGTATTTTACACCACTAAAAGAATTTAA
- Protein Sequence
- MRKFKRVQAQNQASIEKHLEANPLDSSSDEENEASNEVLQQAVTKVLSSYEGEGGDAEKSLSYLTDTFQSGGAICLICISSVKKTEAIWSCSTCYSFMHLPCIQHWIRDSLSYKQEKGITPLWACPKCRKEYQEDEIPKRYLCFCGQTTDPPYQPWTIPHSCGEKCEKPLQPLCGHRCVLLCHPGPCPPCPKMVRVACFCGKQSPQPRRCNAKEWSCQKICSKPLPNCDHRCAEECHRGDCPPCSKILSVPCHCGNKTEERPCNQSNWFCDKPCENRLSCKVHVCEGRCHRAGDCGECSLAKNRTCPCGKKRYEVSCKLKNVPTCGDTCGKLLDCGSHYCNMRCHTDRCGQCLEVSTKTCRCRSYDKEIACAKEFHCNKKCTQMRLCGKHLCNKKCCDCLLRNNFNVCEKICDNTLNCQKHKCPAPCHSGPCYPCPRTNVIQCRCGNSKITIPCGRIKRIKPPKCNKLCKIPPVCHHPKRESHKCHHGPCPPCRKVCALVHKKCGHSCPAVCHTKVWVKVKANGVSSQTGGGFFDAPKERMQLKTLPCPPCEVSIMVTCLGGHETLPLPCYKAISASCQRECGQMLGCTNHSCEMVCHKVFVKGETEEERKTCMECEKPCKLPRPAGCTHVCPRVCHKAPCYPCKHLVKVACHCGINSLYKRCAELTSADDRKRDELLKCGNQCPKNYSCGHRCVENCHPGVCPNPEACNKKVKVWCKCKRIKKEFPCVVLRKGSVTVDCDSACRKIKEEQERLREIEAARKRKEEEARNQMEVERFERKFKPRRKGKGRSQSSDDLNKDRSSFFKIFVAVVVLLLAIAFAVFYTTKRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343554;
- 90% Identity
- iTF_00343554;
- 80% Identity
- -