Cfus019281.1
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949987675.1
- Location
- OX465090.1:20959720-20963895[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.041 1.1e+03 -0.8 0.1 149 179 77 107 72 134 0.82 2 3 1.1e-120 2.9e-116 388.5 27.1 1 299 297 588 297 589 0.99 3 3 0.15 4e+03 -2.7 3.4 218 240 615 637 591 662 0.46
Sequence Information
- Coding Sequence
- ATGCAAGGACTTTCGGCAGCCATCAAATCCAAAAAGAAGTCAACGCGAGGCAGTGAAAATGCTTCGGCTAAGAAATCCAAAGCAGCCAAGAAatctgctgcagcagcagcagctcagaCCAGCTCTACAGTATTACCAACAACAAATGCAGTGCCAGAGGAAAACAATAATAGTAAAGTGCCCAAGTTGGAGGAGGCAGCTACTACTAGTACAACAAGTATTCCAACAGAGTCATTGCTTCAAACTTCACCAACTTTGTCTCTAAAAGCAGAAACTTTGTCAAGTCAAACAAACAGTCGCGATGAAGTCATCGAAGAATATGATTTTAGCGATAGGCAGCTGAAAGCTGTCAGCGGCGGCAACGGCGACGAAGACGAAGAAAACACCAAAAGCTGCCACATTGACTCTGATATTGGTGTTGATGATATGCTTGATATTGGTATCGTCGATGTGAGTTCTGATAAGCATAGTAGTATAGAAGCAGCGTGCAAACAGACAAAGCCATCCAATGAAGACGAAATTTTAAATGGAACCGAAAACGTCGTTACCGTAGCGGCGACAGCGGTGGTGCCAGAGGCAGCtgataacaataacaaagaaaaagaaattgcCACAATTGCAATTTCCGCTGCAGACGACAATGTTGCAGCAGGCATTTTGGATAGTAAATCCCCTAAAGATGTAGAGTCTACAAAATGCTTGACACAGCAGTTTGATTTTAAAGTTCCTGCAACTGAGTCAGAGCCACTGGAGTCTACCAAAAACATCTTGCAAAGTTGTCCTATAACGCCCAGCTGCATTGTAGATGAAGCTCAATACAGTGATGAGCACGATGAGGAGCCCGAACAGGAGTTGCTTGTGCAGTTTCTAGGCGAAGCTAATCGCATTgcCGAAGCTCGTTTGGCAGCGCGTCGTCAAGCACGCGCCGAGGCTCGTGAAATACGTATGCGCGAACTGGAACGCCAACAAAAGGAGCAGGAACAAAACGCTGATCGTGTTTTTGACATGCATAATGCCAGTGGCAGTGCCATCAGCGAAACGCTTACCACACATCCCGCACGCCTTGGCTATGGTGGCCTTTTAAATATGACGCGAGCCACAGCCTCACGTCGCAGCAGCGAGGATTCGCTGGAAGAGGAAGGTAGAAGTTTGCGTGACATCAAGCATGAGCTAAAAgatgtGGAGGAACGTTTCCGCAAAGCGATGATTACAAATGCCCAGCTAGACAACGACCGCGCATCACAAACCTATGAGGTAAAGTTACTCAAGGATAAAAGCGAAAGCATGCAAGAATCCTATGCGCAGCTGCAGCGTGAATTCAAAGAGAAATCGCGCGATTGTAATGCCCTCAAACGTAATTTGGATCGCACAAGTTTGGAGCTAAAGCTGGTGCAGGGACAACTAAGCGAACGTGATGCGCTGATAGCAGAACAGGGTCTTGTGATTGTTGCCATTGAGAATGCGGATGGCAGTGATGCCAAGCGTGCTCTAGTCAGTGTGGAGAATGCAAATGTGTTGGCCTCTGTGCAGGGATCGTTAGATGTAAGACTTAAAAAGTTCAGCGAGGAGAAACATCAGCTGCTGGCCGAAGTGCAAAAACTGAACGAACAGTTGGAAACGTTTAAAAGCGATGGCAAAACAGGACGCGGCAACTCAACAAATGGCCCCTTTGGttatgatgatgattatgaagCTCAAAGAGAAGCAAATAAAATCATATCCGACTACAAATATAAACTACAAAAGGCTGAACAGGAAATCGCCAGTTTGCAGGCGAGCTTAGCACGTTCCGAAACGCAAGTCATACGCTATAAGAGCACAGCGGAAGCGGCCGAAAAAGCGGAAGCCGAATTAAAAGTTGAGCGGCGAAAGCTGCAACGTGAGcacCGCGAAACGCTTGAGCGTCTGGAAGAAGCGGAAACGGCTAATAATCATCTATTAAAGCGTTTGGATAAGTTAAAAAATGCAAAGAGCGCAATACTGAAGGACTTATGA
- Protein Sequence
- MQGLSAAIKSKKKSTRGSENASAKKSKAAKKSAAAAAAQTSSTVLPTTNAVPEENNNSKVPKLEEAATTSTTSIPTESLLQTSPTLSLKAETLSSQTNSRDEVIEEYDFSDRQLKAVSGGNGDEDEENTKSCHIDSDIGVDDMLDIGIVDVSSDKHSSIEAACKQTKPSNEDEILNGTENVVTVAATAVVPEAADNNNKEKEIATIAISAADDNVAAGILDSKSPKDVESTKCLTQQFDFKVPATESEPLESTKNILQSCPITPSCIVDEAQYSDEHDEEPEQELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNASGSAISETLTTHPARLGYGGLLNMTRATASRRSSEDSLEEEGRSLRDIKHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDKSESMQESYAQLQREFKEKSRDCNALKRNLDRTSLELKLVQGQLSERDALIAEQGLVIVAIENADGSDAKRALVSVENANVLASVQGSLDVRLKKFSEEKHQLLAEVQKLNEQLETFKSDGKTGRGNSTNGPFGYDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHRETLERLEEAETANNHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339141; iTF_00337516; iTF_00335891;
- 90% Identity
- iTF_00337516; iTF_00335891;
- 80% Identity
- -