Basic Information

Insect: Chymomyza procnemis
Gene Symbol: lrrfip2
Assembly: GCA_035046065.1
Location: JAWNOJ010000021.1:20689425-20695703[-]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.22 4e+03 -3.2 3.1 36 75 55 97 13 113 0.51

2 3 2.5e-121 4.5e-117 390.6 24.4 1 299 295 587 295 588 0.99

3 3 0.17 3.1e+03 -2.8 3.4 138 171 618 637 590 661 0.43

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.22	4e+03	-3.2	3.1	36	75	55	97	13	113	0.51
2	3	2.5e-121	4.5e-117	390.6	24.4	1	299	295	587	295	588	0.99
3	3	0.17	3.1e+03	-2.8	3.4	138	171	618	637	590	661	0.43

Sequence Information

Coding Sequence: ATGCAAGGACTTTCGGCAGCCATTAAATCCAAAAAGAAGTCAACGCGAGGCGGTGAAAATGCTGCGGCAACGAAGAAAACTAAAGCGGCCAAGAAAAGTGCCGCTGCTGCACAGAGCACATCCAATACAGTATTACCAAGAAATGCAGAGGAAAACAATAATAGTAAGTTGGCCAAGTTGGAGGAGAAGGCGGCAACTgcaacgacagcaacaactggCACAACAAGTCTTCCAACTTCGTTGTCTATAAAAGCAGAAACTTTGTCAAGTCAAACAAACAGTCGCGATGAAGTCATCGAAGAATGTGATTTTAGCGATAGGCAGTCAAAAGCTGTCAGCGGCGGCaatggcaacggcaacggcagcagcggcaacgaAGACGAAGAAAACACCAAAAGCTGCCACATTGTCGCTGATCATGATAATATGGTGGTTGGCATTGGTATCGTCGATGTGAGCTCTGATAAGCAGCGCAATGGTGCAGCACAGACAAAGCCATCCAATGAAGACGAATTTATAAGTGTCATTGATGGCAACGACGTTACCGtagcggcggcagcggcggcaacAGCAACGGCAGCGTCGACAGCtgataacaataacaaagaaCAAGAAATTGCCACAATTGCGATTTCCGCTGCAGACGGGAATGTTGCCGAAACGGCTGAACGCTCTGCAAAATCCTTGACACAGCAGcagtttgattttaaagttcCTGAAACCGCTGAGCACAAGCCAGCTGAGACGTCTAACACAAAGAACTTGCAAAGTTGTCCCATAACGCCCAGCTGTGTTGTAGATGAAGGTCAATACAGTGATGAGCACGAGGAGGAGCCCGAACAGGAGCTGCTGGTGCAGTTTCTAGGCGAAGCTAATCGTATTGCCGAGGCACGTTTGGCTGCACGTCGTCAAGCACGCGCCGAGGCACGTGAAATACGTATGCGGGAACTGGAACGCCAACAAAAGGAACAGGAACAAAACGCTGATCGTGTCTTTGACATGCATAATGCCAGTGGCGGTGCCGCCATCAGCGATACGCCTAACACACATCCCGCACGCCTTGGCTATGGTGGCCTTTTAAATGTGACGCGAGCCACAACCTCGCGTCGCAGCAGCGAGGATTCGCTGGAAGAGGAAGGACGTAGTCTACGTGACATTAAGCATGAGCTCAAGgaCGTGGAGGAACGTTTCCGCAAAGCGATGATTACAAATGCCCAGCTAGACAATGACCGCGCATCACAAACCTACGAGGTAAAGTTGCTCAAGGATAAAAGCGAAAGCATGCAAGAATCCTATGCGCAACTGCAACGTGAGTTCAAAGAGAAATCGCGCGATTGTAATGCCCTCAAACGTAATTTGGATCGCACAAGTTTGGAGCTTAAACTGGTGCAGGGACAGCTTAGCGAACGTGATGCGCTGATAGCAGAACAGGGTCTTGTGATTGTTGCCATTGAGAATGCGGATGGCAGTGATGCCAAGCGTGCTCTAGTCAGTGTGGAGAATGCAAATGTGTTGGCCTCAGTGCAGGGCTCGTTAGATGTAAGACTTAAAAAGTTCAACGAGGAGAAACATCAGCTGATAGCCGAAGTGCAAAAACTAAACGAACAACTGGAGGCGTTTAAAAGCGATGGCAAAACAGGACGTGGTAGCTCAACAAATGGCCCCTTCGGTTACGATGATGATTATGAAGCTCAAAGagaagcaaataaaatcatatctgattacaaatataaactaCAAAAGGCTGAACAGGAAATCGCCAGTTTGCAGGCGAGCTTAGCACGTTCCGAAACGCAAGTCATACGCTACAAGAGCACAACGGAGGCGGCTGAAAAAGCCGAAGCTGAATTAAAAGTTGAGCGGCGAAAGCTGCAACGTGAGcATCGTGAAACGCTTGAGCGTCTGGAAGAAGCGGAAACGGCtaataatcatttattaaaGCGTTtggataagttaaaaaatgccAAGAGCGCTATACTGAAGGACTTATGA
Protein Sequence: MQGLSAAIKSKKKSTRGGENAAATKKTKAAKKSAAAAQSTSNTVLPRNAEENNNSKLAKLEEKAATATTATTGTTSLPTSLSIKAETLSSQTNSRDEVIEECDFSDRQSKAVSGGNGNGNGSSGNEDEENTKSCHIVADHDNMVVGIGIVDVSSDKQRNGAAQTKPSNEDEFISVIDGNDVTVAAAAAATATAASTADNNNKEQEIATIAISAADGNVAETAERSAKSLTQQQFDFKVPETAEHKPAETSNTKNLQSCPITPSCVVDEGQYSDEHEEEPEQELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNASGGAAISDTPNTHPARLGYGGLLNVTRATTSRRSSEDSLEEEGRSLRDIKHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDKSESMQESYAQLQREFKEKSRDCNALKRNLDRTSLELKLVQGQLSERDALIAEQGLVIVAIENADGSDAKRALVSVENANVLASVQGSLDVRLKKFNEEKHQLIAEVQKLNEQLEAFKSDGKTGRGSSTNGPFGYDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTTEAAEKAEAELKVERRKLQREHRETLERLEEAETANNHLLKRLDKLKNAKSAILKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338330;
90% Identity: -
80% Identity: -