Basic Information

Insect: Chymomyza amoena
Gene Symbol: lrrfip2
Assembly: GCA_037043745.1
Location: JBAMAX010002010.1:151983-156135[+]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.39 9.5e+03 -4.0 2.5 61 61 46 46 8 115 0.57

2 3 4.8e-121 1.2e-116 389.7 26.9 1 299 288 579 288 580 0.99

3 3 0.15 3.7e+03 -2.7 3.4 218 240 606 628 582 653 0.46

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.39	9.5e+03	-4.0	2.5	61	61	46	46	8	115	0.57
2	3	4.8e-121	1.2e-116	389.7	26.9	1	299	288	579	288	580	0.99
3	3	0.15	3.7e+03	-2.7	3.4	218	240	606	628	582	653	0.46

Sequence Information

Coding Sequence: ATGCAAGGACTTTCGGCTGCCATTAAATCCCAAAAGAAGTCATCGCGAGGCAATGAAAATGCTTCGGCTAAGAAATCAAAAGCAGCCAAGAAATCTgctgcagccgcagcagcagctcagACCAGCTCTACTACAGTATTACCAACAACAAATGCAGTGCCAGAGGAAAACAATAATAGTAAAGTTGCCAAGTTGGAGGTAGCAGCTACTAGTACGACAAGTATTCCAACAGCGACATTGCTTCAAACTTCACCAACTTTGTCtctagaagcagcagcaactttGTCAAGTCAAACAAACAGTCGCGATGAAGTCATCGAAGAATGTGATTTTAACGATAGGCAGCTGAAATCTGTCAGCGGCGGCGACGGCAGCGAAGACGAAGAAAACACCAAAAGCCACATTGACTCTGATATTGGTGTTAATGATGATAATATGCTTGATATTGGCATCGTCGATATGAGTTCTGATAAGCAGACAAAGCCATCCAATGAAGACGAAATTTTAAATGGAACCGAAAACGTCGTTACCGTAGTGGCGGCGGTGCCGGCGGTGACGGAGCCAGCGGCAGCTGATAACAAtaacaaagaaaaagaaattgcCACAATTGCGATTTCCGCTACAGACGACAATGTTGCAGCACGCATTTTGGGCAGTAAATCCCCCAAAGATGCAGAGTCTACACAGCAGTTTGATTTTAAAGTTCCTGCAACTGAGCCATTGGagtctacaaaaaaaaggttgcaaAGTTGTCCTATAACACCCAGCTGCATTGTAGATGAAGGTCAATACAGTGATGAGCCCGAGGAGGAGCCTGAACAGGAGTTGCTTGTGCAGTTTCTAGGCGAAGCTAATCGCATTgccgAAGCTCGCTTGGCCGCGCGTCGTCAAGCACGCGCCGAGGCTCGTGAAATACGTATGCGCGAACTGGAACGCCAACAAAAGGAGCAGGAACAAAACGCTGATCGTGTTTTTGACATGCATAATGCCAGTGGCAGTGCCATCAGCGAAACGCTTACCACACATCCCGCACGCCTTGGCTATGGTGGCCTTTTGAATATGACGCGAGCCACAGCCTCACGTCGCAGCAGCGAGGACTCGCTGGAAGAGGAAGGTAGAAGTTTGCGTGACATCAAGCATGAGCTAAAAGACGTGGAGGAACGTTTCCGCAAAGCGATGATTACAAATGCCCAGCTAGACAACGACCGCGCATCACAAACCTATGAGGTAAAGTTACTCAAGGATAAAAGCGAAAGCATGCAAGAATCCTATGCGCAGCTGCAGCGTGAATTCAAAGAGAAATCGCGCGATTGTAATGCCCTCAAACGTAATTTGGATCGCACAAGTTTGGAGCTAAAGCTGGTGCAGGGACAACTAAGCGAACGTGATGCGCTGATAGCAGAACAGGGTCTTGTGATTGTTGCCATTGAGAATGCGGATGGCAGTGATGCCAAGCGTGCTCTAGTCAGTGTGGAGAATGCAAATGTGTTGGCCTCTGTGCAGGGTTCGTTAGatGTAAGACTTAAAAAGTTCAGCGAGGAGAAACATCAGCTGCTAGCCGAAGTGCAAAAACTGAACGAACAGTTGGAAACGTTTAAAAGCGATGGCAAAACAGGACGCGGCAGCTCAACAAATGGCCCCTTTGGctatgatgatgattatgaagCTCAAaGAGAAGCTAATAAAATCATATCCGACTACAAATATAAACTGCAAAAGGCTGAACAGGAAATCGCCAGTTTGCAGGCGAGCTTAGCACGTTCCGAAACGCAAGTCATACGCTATAAGAGCACAGCGGAGGCGGCCGAAAAAGCGGAAGCCGAATTAAAAGTTGAGCGGCGAAAGCTGCAACGTGAGcaccGCGAAACGCTTGAGCGTCTGGAAGAAGCGGAAACGGCTAATAATCATCTATTAAAGCGTTTGGAtaagttaaaaaatgcaaaGAGCGCAATACTGAAGGACTTATGA
Protein Sequence: MQGLSAAIKSQKKSSRGNENASAKKSKAAKKSAAAAAAAQTSSTTVLPTTNAVPEENNNSKVAKLEVAATSTTSIPTATLLQTSPTLSLEAAATLSSQTNSRDEVIEECDFNDRQLKSVSGGDGSEDEENTKSHIDSDIGVNDDNMLDIGIVDMSSDKQTKPSNEDEILNGTENVVTVVAAVPAVTEPAAADNNNKEKEIATIAISATDDNVAARILGSKSPKDAESTQQFDFKVPATEPLESTKKRLQSCPITPSCIVDEGQYSDEPEEEPEQELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNASGSAISETLTTHPARLGYGGLLNMTRATASRRSSEDSLEEEGRSLRDIKHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDKSESMQESYAQLQREFKEKSRDCNALKRNLDRTSLELKLVQGQLSERDALIAEQGLVIVAIENADGSDAKRALVSVENANVLASVQGSLDVRLKKFSEEKHQLLAEVQKLNEQLETFKSDGKTGRGSSTNGPFGYDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHRETLERLEEAETANNHLLKRLDKLKNAKSAILKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338330;
90% Identity: iTF_00338330;
80% Identity: -