Ccos015222.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000256.1:7875636-7882538[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.04 7.4e+02 -0.8 0.2 149 178 79 108 56 139 0.74 2 2 3.7e-121 6.8e-117 390.1 26.9 1 299 304 595 304 596 0.99
Sequence Information
- Coding Sequence
- ATGCAAGGACTTTCGGCAGCCATCAAATCCAAAAAGAAGTCAACGCGAGGCGGTGAAAATGCTTCGGCTAAGAAATCAAAAGCAGCCAAGAAATCTGCTGCAGCCGCAGCAGCAGCAGCTCAGACCAGCTCTACAGTATTACCACCAACAACAAATGCACTGCCAGAGGAAAACAATAATAGTAAAGTGCCCAAGTTGGAGGAGGCAGCTACTAGTACAACAAGTATTCCAACAGAGTCATTGCTTCAAACTTCACCAACTTTGTCTCTAAAAGCAGAAACTTTGTCAAGTCAAACAAACAGTCGCGATGAAGTCATCGAAGAATGTGATTTTAGCGATAGGCAGCTGAAAGCTGTCAGCGGCGGCAACGGCGACGAAGACGAAGAAAACACCAAAAGCTGCCACATTGACTCTGATATTGGTGTTGATGATATGCTTGATATTGGTATCGTCGATGTGAGTTCTGATAAGCATAGTAGTATAGAAGCAGTGTGCAAACAGACAAAGCCATCCAATGAAGACAAAATTTTAAATGGAACCGAAAACGTCGTTACCGTAGCGGCGGCGGTGGCGGTGCCAGAGGCAGCTGATAACAACAACAAAGAAAAAGAAATTGCCACAATTGCGATTTCCGCTGCTGCAATACCACTAGCAGACGACAATGTTGCAGCAGGCATTTTGGATAGTAAATCCCCCAAAGATGTAGAGTCTACAAAATGCTTGACACAGCAGTTTGATTTTAAAGTTCCTGCAACTGAGTCAGAGCCACTGGAGTCTACAAAAAAAAGCTTGCAAAGTTGTCCTATAACGCCCAGCTGCATTGTAGATGGAGGTCAATACAGTGATGAGAACGAGGAGGAGCCCGAACAGGAGTTGCTTGTGCAGTTTCTAGGCGAAGCTAATCGCATTGCTGAAGCTCGTTTGGCAGCGCGTCGTCAAGCACGCGCGGAAGCTCGTGAAATACGTATGCGCGAACTAGAACGCCAACAAAAGGAGCAGGAACAAAACGCTGATCGTGTTTTTGACATGCATAATACCAGTGGCAGTGCCATCAGCGAAACGCTTACCACACATCCCGCACGCCTTGGCTATGGTGGCCTTTTAAATATGACGCGAGCCACAGCCTCACGTCGCAGCAGCGAGGACTCGCTGGAAGAGGAAGGTAGAAGTTTGCGTGACATCAAGCATGAACTAAAAGACGTGGAGGAACGTTTCCGCAAAGCGATGATTACAAATGCCCAGCTAGACAACGACCGCGCATCACAAACCTATGAGGTAAAATTACTCAAGGATAAAAGCGAAAGCATGCAAGAATCCTATGCGCAGCTGCAGCGTGAATTCAAAGAGAAATCGCGCGATTGTAATGCCCTCAAACGTAATTTGGATCGCACAAGTTTGGAGCTAAAGCTGGTGCAGGGACAACTAAGCGAACGTGATGCGCTGATAGCAGAACAGGGTCTTGTGATTGTTGCCATTGAGAATGCGGATGGCAGTGATGCCAAGCGTGCTCTAGTCAGTGTGGAGAATGCAAATGTGTTGGCCTCTGTGCAGGGATCGTTAGATGTAAGACTTAAAAAGTTCAGCGAGGAAAAACATCAGCTGCTGGCCGAAGTGCAAAAACTGAACGAACAGTTGGAAACGTTTAAAAGCGATGGCAAAACAGGACGCGGCAGCTCAACAAATGGCCCCTTTGGTTATGATGATGATTATGAAGCTCAAAGAGAAGCAAATAAAATCATATCCGACTACAAATATAAACTACAAAAGGCTGAACAGGAAATCGCCAGTTTGCAGGCGAGCTTAGCACGTTCCGAAACGCAAGTCATACGCTATAAGAGCACAGCGGAGGCGGCCGAAAAAGCGGAAGCCGAATTAAAAGTTGAGCGGCGAAAGCTGCAACGTGAGACTATGTTAGTGGCAAGTTTTTGGGATGAGTGTCATTGCCAGTAG
- Protein Sequence
- MQGLSAAIKSKKKSTRGGENASAKKSKAAKKSAAAAAAAAQTSSTVLPPTTNALPEENNNSKVPKLEEAATSTTSIPTESLLQTSPTLSLKAETLSSQTNSRDEVIEECDFSDRQLKAVSGGNGDEDEENTKSCHIDSDIGVDDMLDIGIVDVSSDKHSSIEAVCKQTKPSNEDKILNGTENVVTVAAAVAVPEAADNNNKEKEIATIAISAAAIPLADDNVAAGILDSKSPKDVESTKCLTQQFDFKVPATESEPLESTKKSLQSCPITPSCIVDGGQYSDENEEEPEQELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNTSGSAISETLTTHPARLGYGGLLNMTRATASRRSSEDSLEEEGRSLRDIKHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDKSESMQESYAQLQREFKEKSRDCNALKRNLDRTSLELKLVQGQLSERDALIAEQGLVIVAIENADGSDAKRALVSVENANVLASVQGSLDVRLKKFSEEKHQLLAEVQKLNEQLETFKSDGKTGRGSSTNGPFGYDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRETMLVASFWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338330;
- 90% Identity
- iTF_00338330;
- 80% Identity
- -