Basic Information

Insect: Chymomyza caudatula
Gene Symbol: -
Assembly: GCA_035041775.1
Location: JAWNKW010000047.1:3832465-3838198[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.1e-05 0.0016 18.9 2.1 1 23 204 226 204 226 0.97

2 18 6.9e-06 0.00053 20.4 0.4 1 23 232 254 232 254 0.97

3 18 0.001 0.079 13.6 0.9 1 23 260 282 260 282 0.95

4 18 1.5e-05 0.0011 19.3 3.1 1 23 288 310 288 310 0.97

5 18 3.3e-05 0.0026 18.2 4.7 1 23 316 338 316 338 0.99

6 18 6e-05 0.0047 17.4 5.7 1 23 344 366 344 366 0.97

7 18 3e-07 2.3e-05 24.7 4.3 1 23 372 394 372 394 0.98

8 18 1.1e-07 8.2e-06 26.1 2.4 1 23 400 422 400 422 0.97

9 18 6.2e-05 0.0048 17.4 6.7 1 23 429 451 429 451 0.97

10 18 0.00011 0.0084 16.6 6.5 1 23 457 479 457 479 0.98

11 18 9.6e-06 0.00075 19.9 4.5 1 23 485 507 485 507 0.98

12 18 7e-06 0.00054 20.4 8.1 1 23 513 535 513 535 0.98

13 18 5.7e-06 0.00044 20.6 7.6 1 23 541 563 541 563 0.97

14 18 6.4e-07 4.9e-05 23.6 7.7 1 23 569 591 569 591 0.98

15 18 0.0002 0.015 15.8 9.5 1 23 597 620 597 620 0.95

16 18 7e-05 0.0055 17.2 0.9 1 23 626 648 626 648 0.98

17 18 0.0012 0.093 13.3 4.4 1 23 658 680 658 680 0.98

18 18 8.8e-06 0.00068 20.0 1.6 1 23 686 709 686 709 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.1e-05	0.0016	18.9	2.1	1	23	204	226	204	226	0.97
2	18	6.9e-06	0.00053	20.4	0.4	1	23	232	254	232	254	0.97
3	18	0.001	0.079	13.6	0.9	1	23	260	282	260	282	0.95
4	18	1.5e-05	0.0011	19.3	3.1	1	23	288	310	288	310	0.97
5	18	3.3e-05	0.0026	18.2	4.7	1	23	316	338	316	338	0.99
6	18	6e-05	0.0047	17.4	5.7	1	23	344	366	344	366	0.97
7	18	3e-07	2.3e-05	24.7	4.3	1	23	372	394	372	394	0.98
8	18	1.1e-07	8.2e-06	26.1	2.4	1	23	400	422	400	422	0.97
9	18	6.2e-05	0.0048	17.4	6.7	1	23	429	451	429	451	0.97
10	18	0.00011	0.0084	16.6	6.5	1	23	457	479	457	479	0.98
11	18	9.6e-06	0.00075	19.9	4.5	1	23	485	507	485	507	0.98
12	18	7e-06	0.00054	20.4	8.1	1	23	513	535	513	535	0.98
13	18	5.7e-06	0.00044	20.6	7.6	1	23	541	563	541	563	0.97
14	18	6.4e-07	4.9e-05	23.6	7.7	1	23	569	591	569	591	0.98
15	18	0.0002	0.015	15.8	9.5	1	23	597	620	597	620	0.95
16	18	7e-05	0.0055	17.2	0.9	1	23	626	648	626	648	0.98
17	18	0.0012	0.093	13.3	4.4	1	23	658	680	658	680	0.98
18	18	8.8e-06	0.00068	20.0	1.6	1	23	686	709	686	709	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGTGCTGCTAGCTCAGCTTCCTCGGTGGTTACACCGGTGGTAACAACTGGCGGCGGTACAACCATAACTTTGGGTGGTGTACCACACTTGCCAACTAAGTCAGAGATCAAGGAAGACGGCAAGCCGCCACACGGCATAGAGAtgtataaagtaaatattgaGGACATTTCCCAGCTCTTCACATACCATgaagtttttggcaaaatacaCGGTGATGTGGTTAACCATCAGTTAGCAGCGGCACATGGTGGCCAATTGCCACCACCACCTCCTTTGCCACCGCAAACGCATACAGCCagtgctgcagcagcggcagtatCTACAAATAATGCAGCAGTGGCTGCAGTCATGGCGTCGGCTAatgcagccgcagcagctgcagcagcagcttcatcCTCAGCGCCTGTGACGACAAGTAGCGCCAGTGGCGGACAGCAGACAACAGCCACGGTGACGACAAGCAGTGGCGGAAGCGCCGGCAATAGCACGGGTCCGGGTGAGTTGCTAATGCCCAAGATGGAGGGTGGCATACATGGCGTCGATGGGCAGACGACAGTGACCCTGGCGCCAGACGGTACGCCTATTGCAACGGGCACGCATGTGTGCGATATATGCGGCAAGATGTTCCAGTTTCGTTATCAGCTGATTGTGCATCGTCGCTACCATAGCGAACGTAAGCCATTTATGTGTCAGGTGTGCGGACAGGGTTTTACAACATCGCAGGACTTGACACGTCACGGCAAGATACATATTGGCGGACCAATGTTTACCTGTATCGTGTGCTTCAACGTATTTGCAAATAACACCAGCCTGGAGCGGCATATGAAGCGTCATTCAACGGATAAACCATTTGCCTGCACCATTTGTCAGAAGACATTCGCACGTAAAGAGCATTTGGATAATCATTTTCGTTCGCATACAGGCGAAACACCGTTTCGTTGTCAGTACTGCGCCAAGACGTTTACTCGCAAGGAGCACATGGTTAATCATGTGCGCAAACACACGGGTGAGACGCCTCATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACCCCGCATCAGTGTGACGTATGTGGCAAGAAATACACACGCAAGGAGCACCTAGCCAACCATATGCGCTCGCATACCAATGAGACGCCGTTCCGTTGCGAAATCTGTGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAACCACATCCTCTGGCATACAGCAGGTGAGACCCCACACAGATGTGACTTTTGCTCCAAGACGTTTACACGCAAGGAGCATCTGCTCAATCATGTGCGCCAACATACTGGAGAGTCACCACATCGCTGCTCATACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTTAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACAAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACCTATTGCACCAAGACGTTCACGCGCAAGGAGCATCTAACGAATCATGTCCGCCAGCATACCGGCGACTCGCCGCATCGTTGCAGCTATTGCAAGAAGACCTTTACACGAAAGGAACATCTAACGAATCATGTGCGACTGCATACGGGTGATTCGCCACACAAGTGCGAATACTGTCAAAAGACATTTACGCGAAAGGAGCATCTCAATAATCATATGCGTCAGCATTCGAGTGACAATCCACATTGCTGTAATGTCTGCAATAAGCCCTTCACACGCAAGGAGCATCTGATCAATCATATGTCACGTTGTCACACTGGAGATCGACCCTTTACCTGTGAGACTTGCGGCAAGTCGTTCCCGCTAAAGGGAAATCTGCTCTTCCATCAACGCAGTCATACCAAGGGACAGGAGTGTGAGCGTCCCTTTAACTGTGAGAAATGCCCCAAGAACTTTATATGCAAAGGTCACTTGGTCTCGCATATGCGTTCCCATTCGGGTGAGAAACCGCACGCGTGCACCTTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCATCCAGATGCAATGATGCCGCCACCACCAGTGCATCCGCATCCACAAATACCGGCTGGTGTGCTGACGCAAGTCAAGCAAGAAGTGAAACCGATCATAATTCCCCACCAACCGACAACCATGCACACGATACAACAGATCACAGCAGGTGCAGCGGCTGGAGCCAATGCTGTACAGCTGGCGCCTGGTCTTGTGCCACTGGTCACGTCAACGCTCATCTCGCACAATgcccagcaacaacagcagcagcaacagcaatcccagaagcaacagcagcaacaacagcaacaacaacagcagcagcagcagcaacaacagcaagctgCTCAGCAACAAGCGGCAGCCGCACatcagcaacatcaacagcaagtggctgcacagcagcagcaacaggctgccgctgcagcacaccagcaacaacaacagcagctgcaacagcaacaacaattgctacAGTTGAGCATACAGCAAGCAgcgcatcatcatcaacagGAGCAACATCGtcagcatcagcagcatcatcaggcggcacagcaacagcagcagtcgcATCCCCAAGCTCCACCACCCcctcagcaacaacaacagcccgTGCCCATTGCATTGATCAGTGATCCAAGCGCGTTGGCACGCGCTGCCATGCAGTTGCAACATTTGCCGGCCAATGTGGAACAACATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSASSVVTPVVTTGGGTTITLGGVPHLPTKSEIKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQTHTASAAAAAVSTNNAAVAAVMASANAAAAAAAAASSSAPVTTSSASGGQQTTATVTTSSGGSAGNSTGPGELLMPKMEGGIHGVDGQTTVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHQPTTMHTIQQITAGAAAGANAVQLAPGLVPLVTSTLISHNAQQQQQQQQQSQKQQQQQQQQQQQQQQQQQQAAQQQAAAAHQQHQQQVAAQQQQQAAAAAHQQQQQQLQQQQQLLQLSIQQAAHHHQQEQHRQHQQHHQAAQQQQQSHPQAPPPPQQQQQPVPIALISDPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00529689;
90% Identity: iTF_00339314; iTF_00336120; iTF_00601186; iTF_00515022; iTF_00581671; iTF_00517865; iTF_00473935; iTF_00471774; iTF_01319183; iTF_00574968; iTF_00580899; iTF_00564059; iTF_00603493; iTF_01319899; iTF_00338556;
80% Identity: -