Basic Information

Insect: Drosophila pseudotakahashii
Gene Symbol: -
Assembly: GCA_035046095.1
Location: JAWNOE010000108.1:5424294-5430759[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.3e-05 0.0019 18.8 2.1 1 23 218 240 218 240 0.97

2 18 7.6e-06 0.00064 20.3 0.4 1 23 246 268 246 268 0.97

3 18 0.0011 0.094 13.5 0.9 1 23 274 296 274 296 0.95

4 18 1.6e-05 0.0013 19.3 3.1 1 23 302 324 302 324 0.97

5 18 3.6e-05 0.0031 18.2 4.7 1 23 330 352 330 352 0.99

6 18 6.6e-05 0.0056 17.4 5.7 1 23 358 380 358 380 0.97

7 18 3.3e-07 2.7e-05 24.6 4.3 1 23 386 408 386 408 0.98

8 18 1.2e-07 9.8e-06 26.0 2.4 1 23 414 436 414 436 0.97

9 18 6.8e-05 0.0057 17.3 6.7 1 23 443 465 443 465 0.97

10 18 0.00012 0.01 16.6 6.5 1 23 471 493 471 493 0.98

11 18 1.1e-05 0.00089 19.9 4.5 1 23 499 521 499 521 0.98

12 18 7.7e-06 0.00065 20.3 8.1 1 23 527 549 527 549 0.98

13 18 6.2e-06 0.00053 20.6 7.6 1 23 555 577 555 577 0.97

14 18 7e-07 5.9e-05 23.6 7.7 1 23 583 605 583 605 0.98

15 18 0.00022 0.018 15.7 9.5 1 23 611 634 611 634 0.95

16 18 7.7e-05 0.0065 17.2 0.9 1 23 640 662 640 662 0.98

17 18 0.00085 0.071 13.9 3.4 1 23 672 694 672 694 0.97

18 18 9.6e-06 0.00081 20.0 1.6 1 23 700 723 700 723 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.3e-05	0.0019	18.8	2.1	1	23	218	240	218	240	0.97
2	18	7.6e-06	0.00064	20.3	0.4	1	23	246	268	246	268	0.97
3	18	0.0011	0.094	13.5	0.9	1	23	274	296	274	296	0.95
4	18	1.6e-05	0.0013	19.3	3.1	1	23	302	324	302	324	0.97
5	18	3.6e-05	0.0031	18.2	4.7	1	23	330	352	330	352	0.99
6	18	6.6e-05	0.0056	17.4	5.7	1	23	358	380	358	380	0.97
7	18	3.3e-07	2.7e-05	24.6	4.3	1	23	386	408	386	408	0.98
8	18	1.2e-07	9.8e-06	26.0	2.4	1	23	414	436	414	436	0.97
9	18	6.8e-05	0.0057	17.3	6.7	1	23	443	465	443	465	0.97
10	18	0.00012	0.01	16.6	6.5	1	23	471	493	471	493	0.98
11	18	1.1e-05	0.00089	19.9	4.5	1	23	499	521	499	521	0.98
12	18	7.7e-06	0.00065	20.3	8.1	1	23	527	549	527	549	0.98
13	18	6.2e-06	0.00053	20.6	7.6	1	23	555	577	555	577	0.97
14	18	7e-07	5.9e-05	23.6	7.7	1	23	583	605	583	605	0.98
15	18	0.00022	0.018	15.7	9.5	1	23	611	634	611	634	0.95
16	18	7.7e-05	0.0065	17.2	0.9	1	23	640	662	640	662	0.98
17	18	0.00085	0.071	13.9	3.4	1	23	672	694	672	694	0.97
18	18	9.6e-06	0.00081	20.0	1.6	1	23	700	723	700	723	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCTAGCTCGGTGCCATCAGTAGTAGCCCCTGTTGTGACCACTGGTGGAACGACGATCACCTTGGGCGGCCCACCGCCGCTCCCCAAATCGGAGCACAAAGAGGATGGCAAGCCACCGCACGGCATCGAGATGTACAAGGTGAACATCGAGGATATTTCACAGCTCTTTACCTACCACGAGGTCTTTGGCAAGATCCACGGCGATGTGGTCAATCATCAATTGGCGGCGGCCCACGGAGGTCAGTTGCCACCACctccgccgctgccgccgcagGTCACCAGCCATGCGGCGAGTGCAgcggcagccgcagcagcagcgtcgACAAACAATGCCGCCGTTGCAGCGGTAATGGCCTCAGCgaatgcagcagcagcggcggcggcagctgcaTCGGCGGGGGGACAACTACCGCCGGCAACCAGCGGCAATGGTGGCCAGCAGGTGACGGTAACGACGACCAGCAGCTCGACTAGCAGCGGCGGGAGCACCACCAGTGGGGGCACCACGACCACGGCGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATTCATGGCGTGGACGGCAGCGGCAATGGCGGCGGGCAGAACGTGGCGCTGGCGCCGGACGGTACGCCCATTGCGACGGGGACGCACGTCTGCGACATCTGCGGCAAGATGTTCCAGTTCCGGTACCAGCTGATCGTGCACCGGCGCTACCACAGCGAACGGAAGCCGTTCATGTGCCAGGTGTGCGGCCAGGGGTTCACCACATCGCAGGATTTGACGCGCCACGGCAAGATCCACATTGGCGGGCCCATGTTCACCTGCATCGTGTGCTTCAATGTGTTCGCGAACAATACGAGCCTGGAGCGGCACATGAAACGGCACTCGACGGACAAACCGTTCGCCTGCACCATTTGCCAAAAGACCTTTGCCCGCAAAGAGCATCTGGACAATCACTTCCGCTCGCACACGGGCGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACGCCGCACCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGATCGCACACCAACGAGACGCCGTTCCGTTGCGAGATCTGTGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCACCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCACTTGCTAAACCACGTGCGCCAGCACACGGGAGAGTCGCCGCACCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCACCTGGTCAACCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAGTCGCCGCACAAGTGCACGTACTGCACTAAGACGTTCACGCGCAAGGAGCACCTGACGAACCATGTGCGCCAGCACACGGGCGACTCCCCGCACCGCTGCTCCTACTGCAAGAAGACGTTTACGCGGAAGGAGCACCTGACGAACCATGTGCGCCTGCACACGGGCGACTCGCCGCACAAGTGCGAGTACTGCCAGAAGACGTTTACGAGGAAGGAGCACCTCAACAATCACATGCGCCAGCACTCGAGCGACAATCCGCATTGCTGCAACGTTTGCAACAAGCCGTTTACGCGCAAGGAGCACCTGATCAATCACATGTCGCGGTGCCATACCGGCGACCGTCCCTTCACCTGCGAGACGTGCGGCAAGTCGTTCCCGCTCAAGGGCAACCTGCTCTTCCACCAGCGCAGCCACACCAAGGGCCAGGAGATGGAGCGACCCTTTGCCTGCGAGAAGTGCCCCAAGAACTTCATCTGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAACCGCACGCGTGCACTCTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACGCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCACTCGGCGACCACCACGATGCACACCATCCAGCAGATCACGGCGGGAGCGGCGGGTGGAGCCGGAGCAGTGCAGCTAACACCGGGCCTGGTGCCCCTGGTCACCTCAACGCTCATCTCGCATAATGCGGCCGCCCAGCAGCAGTCGCAGAAGAATCAAgcagccgccgcagcagcTGCCCAGCAGCAGGCCGCAGCAGCCGCTGCTGCTCAACAGCAAGCTGCCCAACAGGCTGCACATCAGCAGCATCAACAGCAAGTGGCCGcccagcatcagcagcaggccGCGGTGGCTgcccatcagcagcagcaacagcagttgcagcagcagcagcaactcctACAGTTGTCCATCCAACAGGCGGCTCACCATcatcagcaggagcagcatcgccagcagcagcaacagcaacaccagcagcaacaacaacagcagcagcatcaccagcagcaacagcagggtCATCCTCAGGCCCCGccgccacagcagcaacagcagccgccGCCCATCGCCCTGATCAGCGATCCAAGTGCCCTGGCACGGGCCGCCATCCAGCTGCAGCACCTGCCTGCGAACGTGGAACAGCACCCGGTTGTTTACTAA
Protein Sequence: MQHVSAASSVPSVVAPVVTTGGTTITLGGPPPLPKSEHKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQVTSHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAGGQLPPATSGNGGQQVTVTTTSSSTSSGGSTTSGGTTTTAGELLMPKMEGGIHGVDGSGNGGGQNVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLVTSTLISHNAAAQQQSQKNQAAAAAAAQQQAAAAAAAQQQAAQQAAHQQHQQQVAAQHQQQAAVAAHQQQQQQLQQQQQLLQLSIQQAAHHHQQEQHRQQQQQQHQQQQQQQQHHQQQQQGHPQAPPPQQQQQPPPIALISDPSALARAAIQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00505532;
90% Identity: iTF_00336928;
80% Identity: -