Camo017473.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- -
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010003812.1:106778-112967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0028 0.26 12.2 1.0 1 23 1433 1456 1433 1456 0.96 2 13 8.5 7.9e+02 1.3 0.2 1 23 1632 1654 1632 1654 0.91 3 13 0.00019 0.018 15.9 2.7 2 23 1657 1678 1657 1678 0.97 4 13 7.3e-05 0.0068 17.2 0.2 3 23 1686 1706 1684 1706 0.98 5 13 5.9e-07 5.4e-05 23.8 4.0 2 23 1713 1734 1712 1734 0.97 6 13 5.8 5.4e+02 1.8 0.4 5 23 1747 1765 1745 1765 0.96 7 13 1.4 1.3e+02 3.7 5.4 3 23 1772 1793 1770 1793 0.93 8 13 0.15 14 6.8 0.2 2 23 1804 1824 1803 1824 0.96 9 13 7.7e-05 0.0072 17.2 0.4 1 19 1830 1848 1830 1852 0.95 10 13 1.7e-05 0.0016 19.3 0.5 1 23 1860 1882 1860 1882 0.98 11 13 0.00011 0.01 16.7 7.6 1 23 1888 1910 1888 1911 0.96 12 13 0.00021 0.02 15.8 5.9 1 23 1916 1938 1916 1938 0.98 13 13 0.0018 0.17 12.9 6.0 1 23 1944 1966 1944 1967 0.96
Sequence Information
- Coding Sequence
- ATGGTCGAAAGCGTGCAATGTCCCGTGTGCACGTTGTATTTGCACGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTTATCAAAGCGCTTGTGCAAATGACAATCGCTGGCAATCTAATGGGACCAGGCAATGCCTTGGCAGCGGCTGTGTTGTCAGCTGACGCTGGCGCTGCCAGCGCGGACGTAAAACCAGCTGTGGCGGCATTGAACGGCATTagctcagcagcagcagccaagtcCACAACAGACACCAACCCATCAGCAGCTACAGCAACGAAATCCAGCGCAGGCACTTCAACCGCAAGTTCTTTACCGCCGCCACTGTCTTCAGCTGCCACGGCGGAGACGCACTTTGTCGGCAGTAGCAAACCGCATAAcatcatcaacagcaacaaattgaaTAATCCACCGAGTAAGGGACTGAAAAATGCGCCACCCGCCGCCGCCACAGCCACCACAACCTCTGCTTCAACATCCTGCTCCAATAGCCGTAGCGATGGTAgcaaacagcaacagcagcaccaACAGACGCCGCAGCATTTTATACGTGCAACAACGACTGAGGCAGCACTTGCAGCCACATCCACAACTACCAATGCAGCGGCGTCCGCCTATCAACAGCTTCTAGCGGAGGACTATCGCTATGAGCcgcatcaacagcagcagcagttgcatGCTTTCCAGCACACAAGCCGAGGAGGAGGCATGACCACTACCACCTCGCTGGCGTATAGTGCCGCTGCCTTGAATCTGCAaccgcaacaacagcagcaccaCTATATAACACAGCAGCAACCGAGGCACAGTCAAGTTACTGCGCCGCAACAGGCGCACTATGCGCAGGCAAGTCTGAAGTACGCTTATGCCACAGCGTTGCCACCACCGCCACCCTTGCAGCTTTTCACCCAGCAGTCAACGGCTGCGCAATCCGCGCAACACCAAAAGCCACCGCCGGCCTATGGCGCCGCAATCAGTCAAATTCGATCTCAGCACAACCaaaacaagcagcagcagcaacaacaacacataacCATACACCAAATCGCACCACCGACAGCAACAgtaacagccacaacaacaactacaaagcACAGCAGCAAAAGCAACGCAACCGCCCATACAGAACTGTTTTTGAATCCCCCACCGCCGCCACAGCCACATGCAATGCCAGTGGCACTAAAATATTTAGGCGAATCAGCGTCAACGTCGTCCATaagactgcaacaacaacaacaacagcaaccacaacatCTTCAGCAAACAGCACAACAAACCCAACAAGCTCCCACTAATTTGAACATGCCGCTGCAGGCTTTTGGCCCCTTATTGCCCACAATATCGCAACAGAAGCCCAGCAGCAGCTGCCAATCCTCTCCGGCGCGTACAGCTGCTGCCAGTCGTCAATCTAATTCACCCTTTGGCGCTCTACTTACAGCAGCAGCTGCGGCCGCCTGTGCTTCACCTTCGTCAGTGCTGCGCTATGCGGAATCGCCAGTGGCTCATTATCTAGAGCGCGAGAATGGTGACTTTATAGTGCAAGAAACGCCTAAGCATATTGTGGAATGCGTAGAAAAGGAAGATGGCGAGTTTTCCGTAATAGAACGTATCTATCAATCACCGCCAAGTGTGCTACACATACACGATGACGACGAGGAGGAggaagatgatgatgacgaaAATGAGGAGGAGCAGAAATTTGAGCATATCGAGGATGGCGATGATGAGCAAGAAGACAGTCGTAGTCGTGCTTCAGTCAACACAAAGAAGCAACGTGTAAGCAAACTAAGCAAGACAAAATCCAAGGCTGGTAAGCGTGCGACAGTAGCTGATCAGGATGAGGAGGAATTTATGAGTGTCAGCAGCAGCTCAGAAAGCGAGGAGCTGGATCAAAAAGAAACACCAGAACTCTTGCCTAGCGTGGAAGTAGCTGCAGCTACGGCAACTTCCTCCAGCGTTAGTGTAGCGGCAACAAAAGCTTCTAGCGGAGTTAATAATTCTGCTGATGCTAATTCCAACTCCAAtacaaacaacagcagcaatagtGGCAATGTCAAATCCAAAAAGAATCGTATTACAGTGCTAAGCGATGTGCCCCTAAATATGAATGAGTATTTAGACTTGGTAGGCAACATAGTGGCTTCCAGTCGCATAGGCGCAGCGCGGCCGTTTGCTGCTGTGGCACCGATACCTTTGgtaaaagttgaaaaagagGAACCGCTAGACGAGGAGTATGATGATGAGCGTATGCCACGTTTTAATGCAACGGAGACCGAGTCTAACCAGCAGCAGCTAGAGACGGAGCAAAAGCCTAGCTTGGAAGAGCAGCTGCATGGCGttaccagcagcagcagtcatGCCACTACCAGCGTTATACGCATGGCTAGCGCGAATGCACAGCAGCAGACGCCCGCTGGCGAAGATTTACCTCAACCGCTTATGAAGTTTGAAGCCGAATCCACAGTATTGTTGCCGCAGCGAATACCTACGAGCGTGCCACAGCGTGGTCCCAAGAAATTAGTCATCAAACCAAAATCTACGACGACGACGGCAGCaaagacaacaaacaaaaagactGACAATTCCACCAGCAGTAGCAATACCACAGAACCCATAGCCTCCACCTCGACTGCAGCCGCACAATCTCTGAGCATATCAAAGGCAGCAGCAGTAAACGATGTGCAAATCAAGAGTGAACAAGTTGAGACACCTTCAAATAGTGGCAGTATTTTGGAGAAACATCTGACCACCAGTTTTAACAATGCTGCAAAACAAGCACGCAAACACTCAAGCGTTAATGATGATGACGCTAGGGTATTGCTTGAGTTTGCTAATTCCAAGCAGCCGCCAGTAAGTGGGTCAGCCAGCACGACTTTTGTGGTCAATGCCAGTTTTCCCTCAGCTAATTCCGTGTTCGCCACCAATGCAGCTACCAGTGCCAGCACCACCACCGCTCCAAAATACGAGACCAATCCGAACGATGAATACATTTTGCCTGATAACAATTTAGATGAGATTGTGATATCCTCGTCATCATCGTTTGCATCCTCGTTGCAACAGGCTCCAGCTACATCAATATTGCCAACTACTgtgcagcaggagcagcagcatcagccGCAATCCCAGGCAACGCCTAACTTCAACGACTTTAACTTTCTGTATCAGTCCAACGCTGCTAATTGCTATGATAATAATGTTGTAAAGGCCTCCAACAGTGGTAGTGGCAACTTTACAGCTTTTGCGTTTCAGCAGCAGCCACATGCGGCCAGTGAAGCTACTAATGCCGCCACTGTGGCGTCTTCGTCTAGTTCTTCGTCAGCGGGCTCGGCTATGTTGGATCATGATTCAATGAACGCCACGTTCCGTGTGGCCAAGGCCGCCAGAGATCAGCAGCAGCAAGGCCTAGGCAACTCTGCCAACGACGGTAGTTCCTGGTATCAGCATCAGGCACAGCCGCATGATGGCGCACAGCCCACCAATTTTAATGCTGCCTTAGCAGCAGTTGATTGTTGTAGTGCAGCCTTAGATAGTGATGCAAGCGATGCTAAGTACTTGGATCTGGATGCTTGTAAGCGGGAGCAGCTAAGTGGTAGTTGCAGCAGCAATTCCTTGGGTACGGCGACGCATTTGCCCACCGCGTCGGCTTCGACAACTTCCTCTTCATTTGCCGCCGCTGCGACGGAGAGCAGTCTGGTGGGTGGTTTAAATATACGCACTGATGAGAAGATGCCCGCTAAGGGCGAGATCTCTGAACAGGAAAGCAATTGTGACATTGAGAATTCTTGGAGTCAGTCGATGTATGGTGACATATCAACACGTTACTTTAGAAACCAATTTTCCGGCGTTTATAATCAAATGCCGGATTGGCGTGCGGACTACTATCCAGCGCAAGATCTCAGCTCGCAACAGCGCGATAGCAAGCGTTTTGACTTTCGGCTACCGGTGGACGTGCCCAATGTTTCCGTGGCCGATTATATGTTTGCAACTCAGGATAATCCGGAAGCAGCGCTGGCCGCCGCCGCCCATGCCCATGCTACATCGTCGCCCAGCAGCTCTAAAAAGACTAAGAGAAAGACAGCAGCCGCCACGGTTACCAGTGCTGCAGGCACCAGCAACTCCGAGACTTACTTATTAGATGCACAGCCCACCACATCGTCAAACGCATTGCTGGCTGGCCCACCAATAGCTTCGACTTCTcgtgctgccgctgctgcagctgccgccTCCTCTGTACCCACACTTGTCGTTCCACAGCAACCCAAGCCACCACGTCGTAAGATTTATAAATGTCCACACTGCGAATACATTTTCGACAAGCTTAAAGACCGTAATGCACATATGATAAATGTTCACAACTATGTGCGCCAAAATCGTCGTTTAATATGCACGCAAGCTGCAGTAGTAACCTCCACCATAACCAGTGCTGCAGCCACTGCTCAACTACTGCCGCCACAGCCACAGTTGCTGCCTATTGCCGCTAGCAGCAGCGGCGTAGTGCAATATGATAACATTGTGGAGGATTCTAAAGATGGCATTGTCAAGATTAAGCAGGAGCATTGTcaagagcagcagcaaaagACGCCACCGGCACGTCGAGATACTTTAACTGCTTCCCTGGGCCAGCTGCATGCGAAAACCGAGCTGCCAGATGTAGGCGATGCTGGTTTACCTGCAGAGCCCAGTAGCGCCGACATAAAGCCTCACGAAGCACTGCTCACCGAGCTAGATGAGAAGCCAACAATGGCACCATTGGCTATGACTACACCAGCTGCCAAACTGGCGGCGCTCTATCGTATGTTAATAATTTACAACGAATCGAAGCTGAACCAAGATCGCAGCATCAGTGAGCTGGAACAAAAGGCCATGGAAAAATCCATTTTTCTGTGCTATGTGTGTCGCACTGATTTTCCCTCCGTCAAGCTGTACGATGCACATTTAACCGAGCATCCAGCTGAATGTTTTACATGCGGCAAAAAGTTCTATCGCTGGAAAAACTTTTCGCTGCATTTGAAGCGTCATATGGGTTGGAAGGAATTTGGCTGCTATGTATGCGATAAGAAGTTTGTGGTGCGTAGCGCACTGGTGGAGCACATGCGAATGCACACGGGACAGACTCCGCTTAAGTGCAAAATATGCGGTAAAAAGTTCAGGCGCTACTCAAACTTGACGCAGCATCGCAAGCGTCACACTAAGATGACTGTGCGCAAGAAGGAATATGTCTGCCATTGCGGCGAGGTTTTGCCCTCCAAGGCACGCTTTTTATGGCATAAGGAGACGCATGACTTGAAGCCAAAATGCTGTCCCTACTGCTGCGATCGCTTTGTGCATGCCAACTCGCTGCGTCGACACATACGTCTGGCTCACTCCGACAAGTTCGACTATGCTGAACCCATGGAGTGTCCCATGTGCAAGCAGATCTTTGCTAAGACTTCCATCAAGGCTCACATGGCCACACACTCGACGGATCCGCAATTTGACTGCGCCATCTGTAACAAGTCCTTTTCAACCAAATGGAATCTCAAGATACACTCCTGGGTGCATGCCAATCGCACAGCGAAGCCCTTCAAATGCGAGTACTGCCCCAAGGCGTTCGTGCGTGAGCTGGACTTTAAAAACCATATGAATGCACACAAGCAGATCAAGCCCTATACTTGCGAGTATTGCGGTTGCAAGTTTATACGCAAGTACAACTATATGCGGCATAGACGCGAGCATCACGGCAACAAGAAGTTTACGTGCGATCAGTGTGACAAATCTTTCCATAGGCATTACTATCTTATAGAGCATCGTCGCATACACACTGGCGAGCGACCCTTCCAATGCACCATTTGCGGCAAAAGTTCTACAACAAAAACGAATCATAATAAGCATTTGAAGATACATCATTCGCGAGATCCCTTCACGGTGGAGGTTTAA
- Protein Sequence
- MVESVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNLMGPGNALAAAVLSADAGAASADVKPAVAALNGISSAAAAKSTTDTNPSAATATKSSAGTSTASSLPPPLSSAATAETHFVGSSKPHNIINSNKLNNPPSKGLKNAPPAAATATTTSASTSCSNSRSDGSKQQQQHQQTPQHFIRATTTEAALAATSTTTNAAASAYQQLLAEDYRYEPHQQQQQLHAFQHTSRGGGMTTTTSLAYSAAALNLQPQQQQHHYITQQQPRHSQVTAPQQAHYAQASLKYAYATALPPPPPLQLFTQQSTAAQSAQHQKPPPAYGAAISQIRSQHNQNKQQQQQQHITIHQIAPPTATVTATTTTTKHSSKSNATAHTELFLNPPPPPQPHAMPVALKYLGESASTSSIRLQQQQQQQPQHLQQTAQQTQQAPTNLNMPLQAFGPLLPTISQQKPSSSCQSSPARTAAASRQSNSPFGALLTAAAAAACASPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEEEEDDDDENEEEQKFEHIEDGDDEQEDSRSRASVNTKKQRVSKLSKTKSKAGKRATVADQDEEEFMSVSSSSESEELDQKETPELLPSVEVAAATATSSSVSVAATKASSGVNNSADANSNSNTNNSSNSGNVKSKKNRITVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPLDEEYDDERMPRFNATETESNQQQLETEQKPSLEEQLHGVTSSSSHATTSVIRMASANAQQQTPAGEDLPQPLMKFEAESTVLLPQRIPTSVPQRGPKKLVIKPKSTTTTAAKTTNKKTDNSTSSSNTTEPIASTSTAAAQSLSISKAAAVNDVQIKSEQVETPSNSGSILEKHLTTSFNNAAKQARKHSSVNDDDARVLLEFANSKQPPVSGSASTTFVVNASFPSANSVFATNAATSASTTTAPKYETNPNDEYILPDNNLDEIVISSSSSFASSLQQAPATSILPTTVQQEQQHQPQSQATPNFNDFNFLYQSNAANCYDNNVVKASNSGSGNFTAFAFQQQPHAASEATNAATVASSSSSSSAGSAMLDHDSMNATFRVAKAARDQQQQGLGNSANDGSSWYQHQAQPHDGAQPTNFNAALAAVDCCSAALDSDASDAKYLDLDACKREQLSGSCSSNSLGTATHLPTASASTTSSSFAAAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISTRYFRNQFSGVYNQMPDWRADYYPAQDLSSQQRDSKRFDFRLPVDVPNVSVADYMFATQDNPEAALAAAAHAHATSSPSSSKKTKRKTAAATVTSAAGTSNSETYLLDAQPTTSSNALLAGPPIASTSRAAAAAAAASSVPTLVVPQQPKPPRRKIYKCPHCEYIFDKLKDRNAHMINVHNYVRQNRRLICTQAAVVTSTITSAAATAQLLPPQPQLLPIAASSSGVVQYDNIVEDSKDGIVKIKQEHCQEQQQKTPPARRDTLTASLGQLHAKTELPDVGDAGLPAEPSSADIKPHEALLTELDEKPTMAPLAMTTPAAKLAALYRMLIIYNESKLNQDRSISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHMGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFRRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQFDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336978; iTF_00337779; iTF_00338597; iTF_00339360;
- 90% Identity
- iTF_00338597; iTF_00337779;
- 80% Identity
- -