Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: -
Assembly: GCA_949987675.1
Location: OX465088.1:135587010-135593241[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.17 13.0 0.9 1 23 1438 1461 1438 1461 0.97

2 13 8.2 8.5e+02 1.3 0.2 1 23 1637 1659 1637 1659 0.91

3 13 0.00018 0.019 15.9 2.7 2 23 1662 1683 1662 1683 0.97

4 13 7.1e-05 0.0073 17.2 0.2 3 23 1691 1711 1689 1711 0.98

5 13 5.6e-07 5.9e-05 23.8 4.0 2 23 1718 1739 1717 1739 0.97

6 13 5.6 5.8e+02 1.8 0.4 5 23 1752 1770 1750 1770 0.96

7 13 1.4 1.4e+02 3.7 5.4 3 23 1777 1798 1775 1798 0.93

8 13 0.15 15 6.8 0.2 2 23 1809 1829 1808 1829 0.96

9 13 7.4e-05 0.0077 17.2 0.4 1 19 1835 1853 1835 1857 0.95

10 13 1.6e-05 0.0017 19.2 0.5 1 23 1865 1887 1865 1887 0.98

11 13 0.00011 0.011 16.7 7.6 1 23 1893 1915 1893 1916 0.96

12 13 0.0002 0.021 15.8 5.9 1 23 1921 1943 1921 1943 0.98

13 13 0.0017 0.18 12.9 6.0 1 23 1949 1971 1949 1972 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.17	13.0	0.9	1	23	1438	1461	1438	1461	0.97
2	13	8.2	8.5e+02	1.3	0.2	1	23	1637	1659	1637	1659	0.91
3	13	0.00018	0.019	15.9	2.7	2	23	1662	1683	1662	1683	0.97
4	13	7.1e-05	0.0073	17.2	0.2	3	23	1691	1711	1689	1711	0.98
5	13	5.6e-07	5.9e-05	23.8	4.0	2	23	1718	1739	1717	1739	0.97
6	13	5.6	5.8e+02	1.8	0.4	5	23	1752	1770	1750	1770	0.96
7	13	1.4	1.4e+02	3.7	5.4	3	23	1777	1798	1775	1798	0.93
8	13	0.15	15	6.8	0.2	2	23	1809	1829	1808	1829	0.96
9	13	7.4e-05	0.0077	17.2	0.4	1	19	1835	1853	1835	1857	0.95
10	13	1.6e-05	0.0017	19.2	0.5	1	23	1865	1887	1865	1887	0.98
11	13	0.00011	0.011	16.7	7.6	1	23	1893	1915	1893	1916	0.96
12	13	0.0002	0.021	15.8	5.9	1	23	1921	1943	1921	1943	0.98
13	13	0.0017	0.18	12.9	6.0	1	23	1949	1971	1949	1972	0.96

Sequence Information

Coding Sequence: ATGATCGAAAGCGTGCAATGTCCCGTGTGCACGTTGTATTTGCACGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTTATCAAAGCGCTTGTGCAAATGACAATCGCAGGCAATCCAATGGGACCAGGCAACGCCTTGGCAGCGGCCGTGCTGACAGGTGCTGCTCTAGTTGATGCAGGCGCTCCAACCGCTGACGTAAAACCAACTGTGGTGGGATTGAACGGAACCAgctcagcaacagcagccaagTCAACAACAGACAGTAACCCATCAGCAGCTACAGCAACGAAACCTAGCGCAGGCCCAACATCCGCAAGTTCTTTACCGCCGCCACTGTCTTCAGCTGCCACGGCGGAGACGCACTTTGTCGGCAATAGCAAACCACATAGcatcatcaacagcaacaaattgaaTAATCCACCGAGTAAGGGACTGAAAAATGCGCCAACCACCGCCACAGCCACCACAACCTCTGCTTCAACATCCTCCATTAGCCGTAGCGATGGTAgcaaacagcaacagcagcatcaaCAGACGCCGCAGCATTTTGTACGTGCATCAACGACTGAGGCAGCACTTGCAGCCACATCCACAACTACCAATACGGCCGCCTATCAACAGCTTCTAGCGGAGGACTATCGCTATGAAccgcatcagcagcagcagcagcagttgcatGCTTTCCAGCACACAAGCCGAGGAGGCATGACCACTACCACCTCGCTGGCTTATAGTGCTGCTGCCTTGAATCTGCaaccacaacagcagcagcaccactATATAACACAGCAGCAACCGAGGCACAGTCAAGTTACAGCTCCGCAACAGGCTCAATATTCCCAGCCAAGTCTGAAGTATACTTATGCCACAGCGTTGCCACCACCGCCACCATTGCAGCTTTTCACCCAGCAGTCAGCGGCTGCGCAGTCCGCGCAACACCAAAAGCCACCGCCGGCCTATGGCGCCGCAATCAGTCAAATTCGATCTCAGCACAACCaaaacaagcagcagcagcagcagcaacaacaacaacacataacCATACACCAAATCGCACCACCGACAGCAACAGTAACagccacaacaactacaaagcACAGCAAAAGCAACGCAACCGCCCATACAGAACTGTTTTTGAATCCCCCACCGCCGCCACAGCCACATGCAATGCCAGTGGCACTAAAATATTTAGGCGAATCAGCGTCAACATCATCCGTaagactgcaacaacaacagcaaccgcaACATCTTCAGCAAACAGCACAACAAACCCAACAAGCCCCCACTAATTTGAACATGCCGCTGCAGGCTTTTGGTCCCGTATTGCCCTCAATAACACAACAGAAGCCCAGCAGCAGCTGCCAATCCTCTCCGGCGCGTTCAGCAGTTGCCAGTCGTCAATCTAATTCTCCTTTTGGCGCTCTACTTACAGCAGCCGCTGCTGCCGCCTGTGCTTCACCTTCGTCAGTGCTGCGCTATGCGGAATCGCCAGTGGCTCATTATCTAGAGCGCGAAAATGGTGACTTTATAGTGCAAGAAACGCCTAAGCATATAGTGGAATGCGTAGAAAAGGATGATGGCGAGTTTTCGGTAATAGAACGTATCTATCAATCACCGCCAAGTGTGCTACACATACACGATGACGACGAGGAGGaggatgatgacgatgacgaaaATGAGGAGCAGCAGAACATTGATCATATCGCGGATGGCGATGATGAGCAAGAAGACAGTCGCAGTCGTGCTTCAGTCAACACAAAGAAGCAACGTGTAAGCAAGCTAAGCAAGACAAAAGCCAAGGCTGGTAAGCGTTCGACAGTAGCAGATCAGGACGAGGAGGAATTTATGAGTGTCAGCAGCAGCTCAGAAAGCGAGGAGGTGGATCAAAAAGAAACACAAGAAGTCTCGCCGAGCGCGCAAGCAGCTGCAACTACGGCACCTTCCCCCAGTGTTAGTTTTGCGGCAACAAAAGGTTCTAGCGGGGTTACTAATTCTGGTGAAGCTAATTCCAACTCCAATACAAATAACAGCAGCAATAGTGGCAATGTCAAATCCAAAAAGAATCGTATTACAGTGCTAAGCGATGTGCCCCTAAATATGAATGAGTATTTAGACTTAGTAGGAAACATAGTGGCTTCCAGTCGGATAGGCGCAGCCCGGCCCTTTGCTGCTGTGGCACCAATACCTTTGGTAAAAGTAGAAAAAGAGGAACCGCTAGATGAGGAGTATGATGATGAGCTTACGTCACGGTTTAATGCAACGGATAATGATACCGGTAGGCAGTCTAATGAGCAGCAGCTAGAGACGGAACAAAAGCCTAGCTTGGAAGAGCAGCTGCATGGCGttaccagcagcagcagtcatGCCACTACCAGCGTTATACGCATGGCCAGCACGAATACACAGCAACAGACGCCTGCTGGCGAAGATTTACCTCTACCGCTTATGAAGTTTGAAGCCGAATGCACAGTGTTGTTACCGCAGCGAATATCTACGAACGTGCAACAGCGTGGACCCAAGAAATTAGTCATCAAACCAAAATCAACGACGACGACAGCTGCaaagacaacaaacaaaaagactGACAATTCCACCAGCAGTAGCAATACCACAGAACCCATAGCCTCCACCTCGACTGCAGCCGCACAATCTCTGAGCATATCAAAGGCAGCAGTAAACGAGTTGCAAATCAAGAGTGAACAGGGTGAGACACCTTCAAATAGTGGCAGTATTTTGGAGAAACATCTGACCACCAGTTTTAACAATGCTGCAAAGCATGCACGCAAACACTCAAGCGTTAATGATGATGACGCTAGGGTATTACTTGAGTTTGCCAATTCCAAGCAGACGCCAGTAAGTGGGTCAGCCAGCACGACTTTTGTGGTCAATGCCAGTTTTCCCTCAGCTAATTCCGTGTTCGCCACCAATTCTGCTACCAGTGCCAGCACCACCGCTCCGAAATACGAGGCCAATCCGAACGACGAATACATTTTGCCTGATAACAATTTAGATGAGATTGTGATATCTTCGTCATCATCCTTTGCATCCTCGTTGCAACAGCCTGCAGCTACGTCAACATTGCCAAATACTgtgcagcaggagcagcaaaATCAGCAGCAGTCCCAGGCAACGCCTTCCTTCAACGACTTTAACTTTCTGTATCAGTCCAACGCTGCTACTTGTTATGATAACAACGTTGTAAAGGCCTCCAACAGTGGTAGTGGAAACTTTACAGCTTTTGCCTTTCAGCAGCAGCCACATGCTGCCAGTGAAGCTACTAATGCCGCCACTGTGGCGTCTTCCTCAAGTTCTTCATCAGCGGGCTCGGCAATTTTGGATCATGATTCAATGAACGCCATGTTCCGTGTGGCCAAGGCCGCTAGAGATCAGCAGCAGCAAGGCCTAGGCAGCTCTGCCACCGACGGTAGTTCCTGGTATCAGCATCAGGCCCAGCCGCATGATGGCGCACAGCCCACCAATTTTAATGCTGCCCTAGCAGCAGTTGATTGTTGTAGTGCAGCCGTAGATAGTGATGCAAGCGATGCCAAGTACTTGGATTTGGATGCTTGTAAGAGGGAGCAGCTAAgtggcagtagcagcagcaattCCTTGGGTACGGTGACGCATTTGCCCTCAGCGTCGGCTTCGACAACTTCCTCTTCATTTGCCGCCGCTGCGACGGAGAGCAGTCTGGTTGGTGGTTTAAATATACGCACTGATGAGAAAATGCCCGCCAAGGGTGAGATCTCTGAGCAGGAAAGCAATTGTGACATTGAGAATTCTTGGAGTCAGTCGATGTATGGCGACATATCAACACGTTACTTTAGAAACCAATTTTCGGGCGTTTATAATCAAATGCCGGATTGGCGTACGGACTATTATCCAGCGCAAGATCTCAGCTCGCAACAGCGCGAGAGCAAGCGTTTTGACTTTCGACTACCGGTGGACGTGCCCAATGTTTCCGTGGCCGATTACATGTTTGCAACTCAGGATAATCCGGAAGCAGCGCTGGCCGCCGCCGCCCATGCCCATGCCACATCATCGCCCAGCAGTTCTAAAAAGGCTAAGAGAAAGATAGTAGCTGCCACGGTAACCAGTGCTGCAGGCAGCAGCAACAGTGGTAGCAACTCCGAGAATTACTTATTAGATGCACAGCCCACCACATCGTCAAACGCATTGCTGGCTGGTCCACCAATAGCTTCGACATCTCGGGCagccgctgctgcagctgccgcCTCCTCTGTACCCACTCTTGTCGTTCCACAGCAACCCAAGCCACCACGTCGGAAGATTTATAAATGTCCACACTGCGAATACATTTTCGACAAGCTTAAGGACCGTAATGCACATATGATAAGCGTTCACAACTATGTGCGACAAAATCGTCGATTAATATGCACGCAAGCAGCAGTGGTTACCTCCACCATAACCAGTGCTGCAGCAACTGCTCAACTGCTGCCGCCACAGCCACAGTTGCTGCCTATAGCCGCGAGCAGCAGCGGCGCAGTGCAATACGACAACGTTGTGGAGGATTCTAAAGATGGCATTGTGAAGATCAAGCAGGAGCATTGCcaggagcagcagcaaaagACGCTACCTGAACGTCGAGATACTTTAACTGCTTCCCTGGGCCAGCTGCATGCCAAGACCGAGCTGCCAGATGTAAGCGATGCTGGTTTACTTGTAGAGCCCAGTAGCGCCGACATCAAGCCTCACGATGCAATGCTCTCCGAGCTAGATCAGAAGCCAACAATAACACCATTGGCTATGACTACACCAGCTGCCAAACTGGCGGCGCTCTACCGTATGTTAATAATTTACAACGAATCGAAGCTGGGCCAAGATCGCAGCATCAGCGAGCTAGAACAAAAAGCCATGGAAAAATCCATTTTCTTGTGCTATGTCTGTCGCACTGATTTTCCCTCCGTCAAGCTGTACGATGCTCATTTAACTGAGCATCCAGCCGAATGTTTTACTTGCGGCAAAAAGTTCTATCGCTGGAAAAACTTTTCGCTGCATTTGAAGCGTCATATGGGCTGGAAGGAATTTGGCTGCTATGTATGCGATAAGAAGTTTGTGGTGCGTAGCGCCCTGGTGGAGCACATGCGAATGCACACGGGCCAGACTCCGCTCAAGTGCAAAATTTGCGGTAAAAAGTTCAGGCGGTACTCAAACTTGACGCAGCATCGCAAGCGTCACACTAAGATGACTGTGCGCAAGAAGGAATATGTATGCCATTGCGGCGAGGTTTTACCCTCCAAGGCACGCTTTTTATGGCATAAGGAGACGCATGACTTGAAGCCGAAATGCTGTCCCTACTGCTGCGATCGCTTTGTGCATGCTAACTCGCTGCGTCGACACATACGCCTTGCTCACTCCGATAAGTTCGACTATGCCGAACCCATGGAGTGTCCCATGTGCAAGCAGATCTTCGCCAAGACCTCCATCAAGGCTCACATGGCCACACACTCGACGGATCCGCAATTTGACTGCGCAATCTGTAACAAGTCCTTTTCTACCAAATGGAATCTCAAGATACACTCTTGGGTGCATGCCAATCGCACAGCGAAGCCCTTCAAATGCGAGTACTGTCCCAAGGCGTTTGTGCGCGAGCTAGACTTTAAGAATCATATGAATGCACACAAGCAGATCAAGCCCTATACTTGCGAGTATTGCGGTTGCAAGTTTATACGCAAGTACAACTATATGCGGCATAGACGCGAGCATCATGGAAACAAGAAGTTTACGTGCGATCAGTGTGACAAATCTTTCCATAGGCATTACTATCTTATTGAGCATCGTCGCATACACACTGGAGAGCGACCCTTCCAATGCACCATTTGCGGCAAAAGTTCTACAACAAAAACGAATCATAATAAGCATTTGAAGATACATCATTCGCGGGATCCCTTCACGGTGGAGGTTTAA
Protein Sequence: MIESVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNPMGPGNALAAAVLTGAALVDAGAPTADVKPTVVGLNGTSSATAAKSTTDSNPSAATATKPSAGPTSASSLPPPLSSAATAETHFVGNSKPHSIINSNKLNNPPSKGLKNAPTTATATTTSASTSSISRSDGSKQQQQHQQTPQHFVRASTTEAALAATSTTTNTAAYQQLLAEDYRYEPHQQQQQQLHAFQHTSRGGMTTTTSLAYSAAALNLQPQQQQHHYITQQQPRHSQVTAPQQAQYSQPSLKYTYATALPPPPPLQLFTQQSAAAQSAQHQKPPPAYGAAISQIRSQHNQNKQQQQQQQQQHITIHQIAPPTATVTATTTTKHSKSNATAHTELFLNPPPPPQPHAMPVALKYLGESASTSSVRLQQQQQPQHLQQTAQQTQQAPTNLNMPLQAFGPVLPSITQQKPSSSCQSSPARSAVASRQSNSPFGALLTAAAAAACASPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDEEEDDDDDENEEQQNIDHIADGDDEQEDSRSRASVNTKKQRVSKLSKTKAKAGKRSTVADQDEEEFMSVSSSSESEEVDQKETQEVSPSAQAAATTAPSPSVSFAATKGSSGVTNSGEANSNSNTNNSSNSGNVKSKKNRITVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPLDEEYDDELTSRFNATDNDTGRQSNEQQLETEQKPSLEEQLHGVTSSSSHATTSVIRMASTNTQQQTPAGEDLPLPLMKFEAECTVLLPQRISTNVQQRGPKKLVIKPKSTTTTAAKTTNKKTDNSTSSSNTTEPIASTSTAAAQSLSISKAAVNELQIKSEQGETPSNSGSILEKHLTTSFNNAAKHARKHSSVNDDDARVLLEFANSKQTPVSGSASTTFVVNASFPSANSVFATNSATSASTTAPKYEANPNDEYILPDNNLDEIVISSSSSFASSLQQPAATSTLPNTVQQEQQNQQQSQATPSFNDFNFLYQSNAATCYDNNVVKASNSGSGNFTAFAFQQQPHAASEATNAATVASSSSSSSAGSAILDHDSMNAMFRVAKAARDQQQQGLGSSATDGSSWYQHQAQPHDGAQPTNFNAALAAVDCCSAAVDSDASDAKYLDLDACKREQLSGSSSSNSLGTVTHLPSASASTTSSSFAAAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISTRYFRNQFSGVYNQMPDWRTDYYPAQDLSSQQRESKRFDFRLPVDVPNVSVADYMFATQDNPEAALAAAAHAHATSSPSSSKKAKRKIVAATVTSAAGSSNSGSNSENYLLDAQPTTSSNALLAGPPIASTSRAAAAAAAASSVPTLVVPQQPKPPRRKIYKCPHCEYIFDKLKDRNAHMISVHNYVRQNRRLICTQAAVVTSTITSAAATAQLLPPQPQLLPIAASSSGAVQYDNVVEDSKDGIVKIKQEHCQEQQQKTLPERRDTLTASLGQLHAKTELPDVSDAGLLVEPSSADIKPHDAMLSELDQKPTITPLAMTTPAAKLAALYRMLIIYNESKLGQDRSISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHMGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFRRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQFDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336166;
90% Identity: iTF_00336166;
80% Identity: -