Cpro012752.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000026.1:9214559-9220844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 1.1 9.8 0.7 1 23 1463 1486 1463 1486 0.97 2 13 8.2 5.9e+02 1.3 0.2 1 23 1664 1686 1664 1686 0.91 3 13 0.00018 0.013 15.9 2.7 2 23 1689 1710 1689 1710 0.97 4 13 7.1e-05 0.0051 17.2 0.2 3 23 1718 1738 1716 1738 0.98 5 13 5.7e-07 4e-05 23.8 4.0 2 23 1745 1766 1744 1766 0.97 6 13 5.6 4e+02 1.8 0.4 5 23 1779 1797 1777 1797 0.96 7 13 1.4 99 3.7 5.4 3 23 1804 1825 1802 1825 0.93 8 13 0.15 11 6.8 0.2 2 23 1836 1856 1835 1856 0.96 9 13 7.5e-05 0.0053 17.1 0.4 1 19 1862 1880 1862 1884 0.95 10 13 1.6e-05 0.0012 19.2 0.5 1 23 1892 1914 1892 1914 0.98 11 13 0.00011 0.0076 16.7 7.6 1 23 1920 1942 1920 1943 0.96 12 13 0.00021 0.015 15.8 5.9 1 23 1948 1970 1948 1970 0.98 13 13 0.0017 0.12 12.8 6.0 1 23 1976 1998 1976 1999 0.96
Sequence Information
- Coding Sequence
- atggTCGAAAGCGTGCAGTGTCCCGTGTGCACGTTATACCTGCACGCGGGCATGAATCTCTCCGATCACTTGGAGACGCATCCCAAGGAGCAGGTTATTAAAGCGCTTGTACAAATGACAATCGCAGGTAATCCCATGGTACCAGGCAACGCactggcagcagcagtgctGTCAGATGCTGCTGCAGGCGCTGCCAACGCTGATGTTAAACCAGCTGTGGTGGCATTACATGCAACTAGCACGGCCACGGCAGCCAAGTCAGCCACGGACAGTAATGCCACTGCCGGTACAGCAACAAAGTCCAGCGCTGGTGCAGCAGGCGCAAGTTCATTGCCGCCGCCACTGTCTTCAGCTGCCACAGCGGAGGCGCACTTTGGCGGCGGTAACAAACCACATAGTAACATTAATAGCATCAAATTGAATAATCCACCGAGTAAGGGACTGAAAAATGCGCCACCCGCCGCCACAGCCACCACAACCTCTGCTTCAAGCTCCTCCATTAGCCGTAGCGATGCTAGCAAACAAcagccgcagccgcagcagcagcagcagcaacaacagcagcatcaacaaACGCCACAGCATTTTATACGTGCAACAACGACTGAGGCAGCACTTGCTGCCACATCCACAACAAGCAGCACGGCCGCCTATCAACAGCTGCTTGCCGAGGACTATCGCTTTGAAACGCATCAGCATCAACAGCAGTTGCATGCTTTTCAGCACACAAGCCGTGGTGCCATAACCACTACCACCACGTTGGCTTATAGTGCCGCTGCCTTGAATTTgcaaccgcaacaacaacagcagcagcaacagcagcagcactatATAGCACAGCAGCATACCCGGCATAGTCAAGTTACAGCTACGCAACAGGCGCACTATCCACAGCCAGGTCTGAAGTATGCTTATGCCACAGCGttgccaccaccgccaccattGCAGcttttCACGCAGCAGTCAGCGACTGCACAAACCGCGCAGCATCAGAAGCCACCGCCGGCCTATGGCGCCGCAATCAGTCAAATTCGATCTCAGCACAACCAAaataagcagcaacagcagcagcagcagcaacaacagcagcatatTACCATACACCAAATTGCACCACCGACAGCAACCGTAACAGCCACAACCACTACAAAgcacagcaaaagcaacacaaCCGCCCATACAGAACTGTTTTTGAATCCCCCACCGACGCCACAACCACATACAATGCCAGTGGCACTAAAATATTCAGGCGAATCAGCGTCAACAACGTCCATAagactgcaacagcaacaccaacaccaacaacatcagcaacagcaaacacaacatcatcaacaaGCAGCACAACAAACACCACAAGCTGCTGCTAATCTGACTATGCCGCTGCAGGCCTTTGGCTCCTTATTGCCGACAATAGCACAACAGAAGCCCAGCAGCAGCTGTCAATCCTCTCCAGCGCGTACAGCCGCTGCTAGTAGGCAGTCAAATTCACCTTTCGGCGCGCTACTTACAGCCGCAGCCGCTGCAGCGTGTGCTTCACCCTCGTCAGTGCTGCGTTATGCAGAGTCACCGGTAGCCCACTATCTGGAGCGTGAAAATGGTGACTTTATTGTGCAAGAAACACCTAAACATATCGTGGAATGCGTAGAAAAAGAAGATGGCGAGTTTTCGGTTATAGAACGTATATATCAATCGCCGCCAAGTGTGCTGCACATACACGATGACGATGAGGAGGAGGAAGATGATGACGGCGAAAATGCTGAGCAACAGAACATGGATCATATTGAGGACGGTGATGATGAGCAAGAAGACAGTCGCAGTCGCGCTTCAGTCAATACAAAGAAACAACGTGTCAGTAAGCTAAGCAAGACTAAAGCCAATGCTGCCAAGCGTGCGACAGCAACAGCCGATCACGACGAGGATGAATTTATGAGCGTCAGCAGCAGTTGCGATAGCGAGCAGTTGGATCAAAAAGTGGTACCAGAAGCAGCGGCTAGCACGCAAGCGGCTGCAACTACGCCGCCTTCACCCAGCATTAGTCTGGCGGCAACCAAAGCTGCTGCAAGCGCTGTGCCTGATGCGAATTCCAACTCCAATACAAATGGCAGCAATAGTGGCAATACCAAGTCCAAAAAGAATCGTATAACAGTGCTGAGCGATGTGCCGCTCAACATGAATGAGTACTTGGACTTGGTAGGTAATATAGTGGCTTCCAGTCGCATAGGCGCAGCGCGTCCCTTTGCTGCTGTGGCACCATTACCTTTGGTCAAAGTGGAAAAAGAGGAGCCGCTCGATGAGGATTATGATGATGAGTTAGCGTCACGTTATCAAGCAACGGATAATGATGCCGATAGGCAGCAGTCCATTCAGCAACAGTTGGAGCCGGAACAAAAACCTAGCTTGGATGAGCAACTGCAGGGTGTAAGCAGTAGCAACAGTCATGCCACCACCAGCGTTATACGCATGGCCAGCACGAATGCACAGCCACTGTCGCAGGCTGAAGAAGAGTTACCTCAACCGCTAATGAAGTTTGAAGCCGAAGGCACAGTATTGTTGCCGCAGCGCATCACTACAAACGTGCAACCTCGTGGACCTAAGAAATTAGTTATCAAACCAAAGTCAACGACGACGGCTGGCAAGAcatcaaacaacaaaaagactGACAATTCCACCAGCAGTAGCAATAATACAGAACCCATAGCCTCCACTTCGTCTGCAGCCGCAAAATCATTGAGCATAtcaaaagcagcagcggcagctgtCAACGAGGTGCAAATCAAGAGTGAAAAGTGCGAAACCCCTACGGCTAGTGGTGCAAGCATTTTGGAGAAGCATTTGACCACCAGTTTTAATAATGCCACAAAGCAGGCACGCAAACACTCAAGcgttaatgatgatgatgctagGGTATTACTAGAGTTTGCCAATTCCAAGCAGCCACCTGTCAGTGGTGCAGCCAGCACCACATTTGTGGTAAATGCCAGTTTTCCCTCGGCTAATTCTGTATTTGCCACCAATGCGGCTGGCAGTGCCAGCAGCAGTAACGCTCCTAAATACGAGTCCAATCCAAATGACGAATATATATTGCCGGATAATAATTTGGATGAGATTGTGATATCCTCGTCATCATCCTTTGCATCATCGTTGCAACAGCCTGCAGCTGCATCAATATTATCAACTAATGTGCAACAGGAGCAGCAAAGTCAGCAGCAGTCGCAGGCAACACCTTCCTTCAACGACTTTAACTTTCTGTATCAATCCAATGCAGCGATTTGCTATGATAACAGCGTCGTAAAGGGTTCCAGCAGTGgtaattttgcagcttttgcttttcagcagcagccgccgcaTGCCGCCAGTGAGGCAACTAATGCTGCCACAGTAGCGTCTTCCTCTAGTTCTTCATCGGCGGGTTCGGCAATTTTGGATCATGATTCAATGAACGCTACGTTCCGTGTGGCCAAGGCCGCCAGagaacagcaacagcaagcaCTCGGCAACTCTGCCACTGATGGTAGTTCCTGGTATCAGCATCAGACACAAACGCATGATGGTGCGCAGCCCACCAATTTTAATGCTGCCCTAGCAGCAGTCGATTGTTGTAGCGCAGCCGTTGATAGTGATGCAAGCGATGCAAAATACTTGGATTTGGATACATGCAAGCGTGAGCAGCTAAGTggcagttgcagcagcaattcCCTGGGTACAGCAGCGCATTTGCCCTCTGCGTCGGCTTCCACGACATCCTCGTcatttgctgccgctgccacgGAGAGCAGTCTGGTGGGTGGTTTGAATATACGCACTGATGAGAAAATGCCCGCTAAAGGCGAGATCTCTGAGCAGGAGAGCAATTGTGACATTGAAAATTCTTGGAGTCAGTCGATGTATGGCGACATATCAACACGTTACTTTAGAAATCAATTTTCCGGCGTTTATAATCAAATGCCAGAATGGCGTATGGACTATTATCCAGCGCAGGATCTCAGCGCGCAGCAGCGCGATAGCAAGCGttttgaCTTTCGACTACCGGTGGATGTGCCCAATGCTTCTGTGGCCGAATACATGTTTGCAACGCAGGATAATCCGGAAGCAGCGTTGGCTGCCGCCCATGCACAAGCTGTCACCACGTCACCCAGCAGTTCCAAAAAGGCTAAGAGAAAGACAGCAGCCGCCACGGTCACCAGTGCCgccggcagcagcaactgtaGTAGCAATTCTGCAAATTTCTTATTAGACGCACAGCCCACCACTTCGTCAAACGCTTTGCTGGCTGGTCCACCAATAGCTTCGACATCTcgggctgctgctgctgcagctgccgcCTCTTCCGTATCCACGCTTATTGGTGGGGCACCGCCACCCAAGCCACCGCGTCGTAAGATATACAAATGTCCACACTGCGAATCCATTTTCGACAAGCTAAAGGAGCGCAATGCACACATGATAAGCGTGCATAATTATGTGCGACAAAATCGTCGACTTATATGCACTCAAGCCGCAGTGGTGACCTCCACCATAACCAGtacagcggcagcggcagcggctcAATTGTTGCCGCCGCAGCCACAGTTGTTGCCCATGGCAGCAAGCAGCAGTAGTGCAGTGCAATATGACAATATTGTGGAGGATTCTAAAGATGGCATTGTAAAGATCAAGCAGGAACATTGccaggagcagcagcaaaagacACTGCCAGCACGTCGTGATACTTTAACCGCCTCGCTGGGGCAGCTACATGCCAAAACCGAGCTGCCCGATGTCAATGATGGTGGGTTACTTGTAGAGCCTAGTAACGCCGACATCAAACCCAACGATGTTATGCTCTCTGAGCTGGATCAGAAACCAACCATGGCACCATTGGCTATGACTACACCAGCTGCCAAACTGGCGGCACTCTATCGCATGTTAATCATTTACAACGAATCGAAGCTGGGTCAAGATCGCAGCATTAGCGAGCTCGAACAAAAGGCAATGGAAAAATCCATTTTCCTATGCTATGTCTGTCGCACGGATTTTCCCTCTGTCAAGCTGTACGATGCGCATTTAACCGAGCATCCAGCGGAGTGTTTTACCTGTGGCAAGAAGTTCTATCGCTGGAAGAACTTTTCGCTGCATTTGAAGCGTCACATGGGCTGGAAGGAATTTGGCTGCTATGTCTGTGACAAGAAGTTTGTGGTGCGCAGCGCGCTGGTGGAGCACATGCGTATGCATACAGGCCAGACGCCGCTCAAGTGTAAAATATGCGGTAAAAAGTTTAGGCGCTACTCCAACTTGACGCAGCATCGCAAGCGTCATACAAAGATGACTGTGCGCAAGAAGGAATATGTATGCCATTGTGGTGAGGTTTTACCCTCGAAGGCGCGCTTTTTGTGGCATAAGGAAACGCATGACTTGAAGCCAAAATGTTGTCCCTATTGTTGCGATCGCTTTGTGCATGCCAACTCGCTGCGTCGACACATACGTCTGGCGCATTCCGATAAATTTGACTATGCCGAGCCCATGGAGTGTCCCATGTGCAAGCAGATATTTGCCAAGACCTCCATCAAAGCGCATATGGCTACACATTCGACAGATCCGCAATTTGACTGTGCTATCTGTAACAAGTCCTTTTCAACCAAATGGAATCTCAAAATACACTCCTGGGTGCATGCCAATCGCACAGCGAAACCCTTCAAATGCGAGTACTGTCCCAAGGCATTCGTGCGCGAGCTGGACTTTAAGAATCATATGAATGCACACAAACAGATCAAGCCCTATACATGCGAGTACTGCGGTTGCAAGTTCATACGCAAGTACAACTATATGCGGCATAGACGCGAGCATCATGGCAATAAGAAGTTTACATGCGATCAGTGCGATAAATCGTTCCATAGGCATTACTATCTAATTGAGCATCGTCGCATACATACCGGCGAGCGTCCCTTCCAATGCACCATTTGCGGCAAAAGttctacaacaaaaacgaatCATAATAAGCATTTGAAAATACATCATTCGCGTGATCCCTTCACGGTGGAGGTCTAA
- Protein Sequence
- MVESVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNPMVPGNALAAAVLSDAAAGAANADVKPAVVALHATSTATAAKSATDSNATAGTATKSSAGAAGASSLPPPLSSAATAEAHFGGGNKPHSNINSIKLNNPPSKGLKNAPPAATATTTSASSSSISRSDASKQQPQPQQQQQQQQQHQQTPQHFIRATTTEAALAATSTTSSTAAYQQLLAEDYRFETHQHQQQLHAFQHTSRGAITTTTTLAYSAAALNLQPQQQQQQQQQQHYIAQQHTRHSQVTATQQAHYPQPGLKYAYATALPPPPPLQLFTQQSATAQTAQHQKPPPAYGAAISQIRSQHNQNKQQQQQQQQQQQHITIHQIAPPTATVTATTTTKHSKSNTTAHTELFLNPPPTPQPHTMPVALKYSGESASTTSIRLQQQHQHQQHQQQQTQHHQQAAQQTPQAAANLTMPLQAFGSLLPTIAQQKPSSSCQSSPARTAAASRQSNSPFGALLTAAAAAACASPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEEEEDDDGENAEQQNMDHIEDGDDEQEDSRSRASVNTKKQRVSKLSKTKANAAKRATATADHDEDEFMSVSSSCDSEQLDQKVVPEAAASTQAAATTPPSPSISLAATKAAASAVPDANSNSNTNGSNSGNTKSKKNRITVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPLPLVKVEKEEPLDEDYDDELASRYQATDNDADRQQSIQQQLEPEQKPSLDEQLQGVSSSNSHATTSVIRMASTNAQPLSQAEEELPQPLMKFEAEGTVLLPQRITTNVQPRGPKKLVIKPKSTTTAGKTSNNKKTDNSTSSSNNTEPIASTSSAAAKSLSISKAAAAAVNEVQIKSEKCETPTASGASILEKHLTTSFNNATKQARKHSSVNDDDARVLLEFANSKQPPVSGAASTTFVVNASFPSANSVFATNAAGSASSSNAPKYESNPNDEYILPDNNLDEIVISSSSSFASSLQQPAAASILSTNVQQEQQSQQQSQATPSFNDFNFLYQSNAAICYDNSVVKGSSSGNFAAFAFQQQPPHAASEATNAATVASSSSSSSAGSAILDHDSMNATFRVAKAAREQQQQALGNSATDGSSWYQHQTQTHDGAQPTNFNAALAAVDCCSAAVDSDASDAKYLDLDTCKREQLSGSCSSNSLGTAAHLPSASASTTSSSFAAAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISTRYFRNQFSGVYNQMPEWRMDYYPAQDLSAQQRDSKRFDFRLPVDVPNASVAEYMFATQDNPEAALAAAHAQAVTTSPSSSKKAKRKTAAATVTSAAGSSNCSSNSANFLLDAQPTTSSNALLAGPPIASTSRAAAAAAAASSVSTLIGGAPPPKPPRRKIYKCPHCESIFDKLKERNAHMISVHNYVRQNRRLICTQAAVVTSTITSTAAAAAAQLLPPQPQLLPMAASSSSAVQYDNIVEDSKDGIVKIKQEHCQEQQQKTLPARRDTLTASLGQLHAKTELPDVNDGGLLVEPSNADIKPNDVMLSELDQKPTMAPLAMTTPAAKLAALYRMLIIYNESKLGQDRSISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHMGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFRRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQFDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336166;
- 90% Identity
- -
- 80% Identity
- -