Basic Information

Insect: Chymomyza costata
Gene Symbol: -
Assembly: GCA_018150985.1
Location: JAECWU010000706.1:3601707-3615023[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0038 0.3 11.7 1.0 1 23 1432 1455 1432 1455 0.97

2 13 7.5 6e+02 1.3 0.2 1 23 1630 1652 1630 1652 0.91

3 13 0.00017 0.013 15.9 2.7 2 23 1655 1676 1655 1676 0.97

4 13 6.5e-05 0.0052 17.2 0.2 3 23 1684 1704 1682 1704 0.98

5 13 5.2e-07 4.1e-05 23.8 4.0 2 23 1711 1732 1710 1732 0.97

6 13 5.1 4.1e+02 1.8 0.4 5 23 1745 1763 1743 1763 0.96

7 13 1.3 1e+02 3.7 5.4 3 23 1770 1791 1768 1791 0.93

8 13 0.14 11 6.8 0.2 2 23 1802 1822 1801 1822 0.96

9 13 6.8e-05 0.0055 17.2 0.4 1 19 1828 1846 1828 1850 0.95

10 13 1.5e-05 0.0012 19.3 0.5 1 23 1858 1880 1858 1880 0.98

11 13 9.7e-05 0.0077 16.7 7.6 1 23 1886 1908 1886 1909 0.96

12 13 0.00019 0.015 15.8 5.9 1 23 1914 1936 1914 1936 0.98

13 13 0.0016 0.13 12.9 6.0 1 23 1942 1964 1942 1965 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0038	0.3	11.7	1.0	1	23	1432	1455	1432	1455	0.97
2	13	7.5	6e+02	1.3	0.2	1	23	1630	1652	1630	1652	0.91
3	13	0.00017	0.013	15.9	2.7	2	23	1655	1676	1655	1676	0.97
4	13	6.5e-05	0.0052	17.2	0.2	3	23	1684	1704	1682	1704	0.98
5	13	5.2e-07	4.1e-05	23.8	4.0	2	23	1711	1732	1710	1732	0.97
6	13	5.1	4.1e+02	1.8	0.4	5	23	1745	1763	1743	1763	0.96
7	13	1.3	1e+02	3.7	5.4	3	23	1770	1791	1768	1791	0.93
8	13	0.14	11	6.8	0.2	2	23	1802	1822	1801	1822	0.96
9	13	6.8e-05	0.0055	17.2	0.4	1	19	1828	1846	1828	1850	0.95
10	13	1.5e-05	0.0012	19.3	0.5	1	23	1858	1880	1858	1880	0.98
11	13	9.7e-05	0.0077	16.7	7.6	1	23	1886	1908	1886	1909	0.96
12	13	0.00019	0.015	15.8	5.9	1	23	1914	1936	1914	1936	0.98
13	13	0.0016	0.13	12.9	6.0	1	23	1942	1964	1942	1965	0.96

Sequence Information

Coding Sequence: ATGGTCGAAAGCGTGCAATGTCCCGTGTGCACGTTGTACCTGCATGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTTATCAAAGCGCTTGTGCAAATGACAATCGCAAGCAATCCAATGGGACCAGGCAACGCCTTGGCAACGGCCATGCTGTCTGGTGTTGCTGCAGCTGATGCTAGCGCTGCAATTGCTGATGTAAAACCAGCTTTGGTGGGATTGAACGAAACCAGCTCAGCAACAGCAGCCAAGTCAACAACAGACAGTAATCCATCAGCAGCTACAGCAACGAAACCTAGCGCAGGCCCATCATCCGTAAGTTCTTTACCGCCGCCACTGTCTTCAGCTGCCACAGCGGAGACGCACTTTGTCGGCAGTAGCAAACCACATAGCAACATCAACAGCAACAAATTGAATAATCCACCGAGTAAGGGACTGAAAAATGCGCCACCCGCCGCCACAGCCGCCACAACCTCTGCTTCAACATCCTCCATTAGCCGTAGCGATGGTGGCAAACAGCAACAGCAGCATCAACAGACGCCGCAGCATTTTGTACGTGCATCAACGACTGAGGCAGCACTTGCAGCCACACCCACAACTACCAATACGGCCGCCTATCAGCAGCTTCTAGCGGAGGACTATCGCTATGAACCGCATCAGCAGCAGCAGCAGTTGCATGCTTTCCAACACACAAGCCGTGGAGGCATGAGCACTACCACCTCGCTGGCTTATAGTGCCGCTGCCTTGAATTTGCAACCACAACAACAGCAGCACCACTATATAACACAGCAGCAACCGAGGCACAGTCAAGTTACAGCTCCGCAACAGGCTCAATATGCCCAGCCAAGTCTGAAGTATACTTATGCGACAGCGTTGCCACCACCTCCACCATTGCAGCTTTTCACCCAGCAGTCATCGGCTGCGCAGTCCGCGCAACACCAAAAGCCACCGCCGGCCTATGGCGCCGCAATCAGTCAAATTCGATCTCAGCACAACCAAAACAAGCAGCAACAACAACAACACATAACCATACACCAAATTGCACCACCGACAGCAACAGTAACAGCCACAACAACTACAAAGCACAGCAAAAGCAACGCAACCGCCCATACAGAACTGTTTTTGAATCCCCCACCGCCGCCACAGCCACATGCAATGACAGTGGCACAAAAATATTTAGTCGAATCAGCGTCAACGTCGTCCATAAGACTGCAACAACAACAGCAACCACAACATGTTCAGCAAACAACACAACAAACACAGCAAGCCCCCACTAATTTGAACATGCCGCTGCAGGCTTTTGGCCCCTTATTGCCCTCAATATCACAACAGAAGCCCAGCAGCAGCTGCCAATCCTCTCCGGCGCGTTCAGCAGTTGCTAGTCGTCAATCTAATTCTCCTTTTGGCGCTCTACTTACAGCAGCCGCTGCTGTCGCTTGTGCTTCACCTTCGTCAGTGCTGCGCTATGCGGAATCGCCAGTGGCTCATTATCTGGAGCGCGAAAATGGTGACTTTATAGTGCAAGAAACTCCTAAGCATATAGTCGAATGCGTAGAAAAGGATGATGGCGAGTTTTCGGTAATAGAGCGTATTTATCAGTCGCCGCCAAGTGTGCTACACATACACGATGACGACGAGGAGGAGGATGAAGACGATGACGAAAATGAGGAGCAGCAGAACATTGATCATATCGAGGATGGCGATGATGAGCAAGAAGACAGTCGCAGTCGTGCTTCAGTCAACACAAAGAAGCAACGTGTAAGCAAGCTAAGCAAGACAAAAGCCAAGTCTGGTAAGCGTTCGACAGTAGCAGATCCAGACGAGGAGGAATTCATGAGTGTCAGCAGCAGCTCAGAAAGCGAGGAGGTGGATCAAAAAGAAACACAAGAAGTCTCACCTAGCGCGCAAGCAGCTGCGTCTACGGCACCTTCCCCCAGCGTTAGTGTTGCGGCAACAAAAGGTTCTAGCGGGGTTACTAATTCTGGTGATGCTAATTCCAACTCCAATACAAATGGCAGCAATAGTGGCAATGTCAAATCCAAAAAGAATCGTATTACAGTGTTAAGCGATGTGCCCCTAAATATGAATGAGTATTTAGACTTAGTAGGAAACATAGTGGCTTCCAGTCGCATAGGCGCAGCCCGGCCCTTTGCTGCTGTGGCACCAATACCTTTGGTAAAAGTAGAAAAAGAGGAACCGCTAGATGAGGAGTATGATGATGAGCTTACGTCACGTTTTAATGCAACGGATAATGATACCGGTAGGCAGTCTAACCAGCAGCAGCTTGAGGCAGAACAAAAGCCTAGCTTGGAAGAGCAGCTGCATGGCCTTACCAGCAGCAGCAGTCATGCCACTACCAGCGTTATACGCATGGCCAGCACGAATACACAGCAACAGACGTCTACTGGCGAAGATTTACCTCTACCGCTTATGAAGTTTGAAGCCGAATGCACAGTGTTGTTACCCCAGCGAATGTCTACGAACGTGCAACAGCGTGGACCCAAGAAATTAGTCATCAAACCAAAATCTACGACGACGACGGCTGCAAAGACAACAAACAAAAAGACTGACAATTCCACCAGCATTAGCAATACCACAGAACCCATAGCCTCCACCTCGACTGCAGCCGCACAATCTCTGAGCATATCAAAGGCAGCAGTAAACGAGGTGCAAATCAAGAGTGAACAGGGTGAGACACCTTCTAATAGTGGCAGTATTTTGGAAAAACATCTGACCACCAGTTTTCACAATGCTGCAAAGCAAGCACGCAAACACTCAAGCGTTAATGATGATGACGCTAGGGTATTACTTGAGTTTGCTAATTCCAAGCAGCCGCCAGTAAGTGGGTCAGCCAGCACGACTTTTGTGGTCAATGCCAGTTTTCCCTCAGCTAATTCCGTGTTTGCTACCAATTCTGCTACCAGTGCCAGCCCCACCACTCCAAAATACGAGGCCAATCCGAACGACGAATACATTTTGCCTGATAACAATTTAGATGAGATTGTGATATCCTCGTCATCATCCTTTGCATCCTCGTTGCAACAGCCTGCAGCTACGTCAACATTGCCAACTACTGTGCAGCAGGAGCAGCAGAATCAGCAGCAGTCCCAGGCAACGCCTTCCTTTAACGACTTTAACTTTCTGTATCAGTCCAACGCTGCTACTTGCTATGATAACAACGTTGTAAAGGCCTCCAACAGTGGTAGTGGAAACTTCACAGCTTTTGCCTTCCAGCAGCAGCCACATGCTGCCAGTGAAGCTACTAATGCCGCCACTGTGGCTTCTTCCTCTAGTTCTTCATCAGCGGGCTCGGCAATTTTGGATCATGATTCAATGAACGCTACGTTCCGTGTGGCCAAGGCCGCCAGAGACCAGCAACAGCAAGGACTAGGCAGCTCTGCCACCGACGGTAGTTCCTGGTATCAGCATCAGGCCCAGCCGCATGATGGCGCACAGCCCACCAATTTTAATGCTGCCTTAGCAGCAGTTGATTGTTGTAGTGCAGCCGTAGATAGTGATGCAAGCGATGCCAAGTACTTGGATTTGGATGCCTGTAAGAGGGAGCAGCTAAGTGGCAGCAGCAGCAGCAATTCCTTGGGTACGGCGGCGCATTTGCCCTCCGCGTCAGCTTCGACAACTTCCTCTTCATTTGCCGCCGCTGCGACGGAGAGCAGTCTGGTTGGTGGTTTAAATATACGCACTGATGAGAAGATGCCCGCCAAGGGCGAGATCTCTGAGCAGGAAAGCAATTGTGACATTGAGAATTCTTGGAGTCAGTCGATGTATGGCGACATATCAACACGTTACTTTAGAAACCAATTTTCGGGCGTTTATAATCAAATGCCGGATTGGCGTACGGACTATTATCCAGCGCAAGATCTCAGCTCGCAACAGCGCGAGAGCAAGCGTTTTGACTTTCGACTACCGGTGGACGTGCCCAATGTTTCCGTGGCCGATTACATGTTTGCAACTCAGGATAATCCGGAAGCAGCGCTGGCCGCCGCCGCCCATGCCCAAGCCACATCGTCGCCTAGCAGTTCTAAAAAGGCTAAGAGAAAGACAGCAGCTGCCACGGTAACCAGTGCTGCAGGCTGCAGCAACAGTGGTAGCAACTCCGAGAATTACTTATTAGATGCACAGCCCACCACATCGTCAAACGCATTGCTGGCTGGTCCACCAATAGCTTCGACATCTCGGGCTGCCGCTGCTGCAGCTGCTGCCTCTTCTGTACCCACTCTTGTCGTTCCACAGCAACCGAAGCCACCACGTCGGAAGATTTATAAGTGTCCACACTGCGAATTCATTTTCGACAAGCTTAAGGACCGTAATGCGCATATGATAAGCGGTCACAACTATGTGCGACAAAATCGTCGATTAATATGCACACAAGCAGCAGTGGTTACCTCCACCATAACCAGTGCTGCAGCAACTGCTCAACTGCTGCCGCCACAGCCACAGTTGCTGCCTATAGCCGCGAGCAGCAGCGGCGCAGTGCAATACGACATTGTGGAGGATTCTAAAGATGGCATTGTCAAGATCAAGCAGGAGCATTGCCAGGAGCAGCAGCAAAAGACGCTACCTGCACGTCGAGATACTTTAACTGCTTCCCTTGGCCAGCTGCATGCCAAGACCGAGCTGCCAGATGTAAGCGATGCTGGTTTACTTGTGGAGCCCAGTAGCACCGACATCAAGCCTCACGATGCAATGCTCTCCGAGCTAGATCAGAAGCCAACAATGGCACCATTGGCTATAACTACACCAGCTGCCAAACTGGCGGCGCTCTATCGTATGTTAATAATTTACAACGAATCGAAGCTGGGCCAAGATCGCAGCATCAGTGAGCTCGAACAAAAGGCCATGGAAAAATCCATTTTCCTGTGCTATGTCTGTCGCACTGATTTTCCCTCCGTCAAGCTGTACGATGCTCATTTAACCGAGCATCCAGCCGAATGTTTTACTTGCGGCAAAAAGTTCTATCGCTGGAAAAACTTTTCGCTGCATTTGAAGCGTCATATGGGCTGGAAGGAATTTGGCTGCTATGTATGCGATAAGAAGTTTGTGGTGCGCAGCGCCCTGGTGGAGCACATGCGAATGCACACGGGCCAGACTCCGCTAAAGTGCAAAATTTGCGGTAAAAAGTTCAGGCGCTATTCAAACTTGACGCAACATCGCAAGCGTCATACTAAGATGACTGTACGCAAGAAGGAATATGTGTGCCATTGCGGCGAGGTTTTACCATCCAAGGCACGCTTTTTATGGCATAAGGAGACGCATGACTTGAAGCCAAAATGCTGTCCCTACTGCTGCGATCGCTTTGTGCATGCTAACTCGCTGCGTCGACACATACGCCTTGCTCACTCCGATAAGTTTGACTATGCCGAACCCATGGAATGTCCCATGTGCAAGCAGATCTTTGCCAAGACCTCCATCAAGGCTCACATGGCCACGCACTCGACGGATCCGCAATTTGACTGCGCAATCTGTAACAAGTCCTTTTCGACCAAATGGAACCTCAAGATACACTCCTGGGTGCATGCCAATCGCACAGCGAAGCCCTTCAAATGCGAGTACTGTCCCAAGGCGTTCGTGCGTGAGCTAGACTTTAAGAACCATATGAATGCACACAAGCAGATCAAGCCCTATACTTGCGAGTATTGCGGTTGCAAGTTTATACGCAAGTACAACTATATGCGGCATAGACGCGAGCATCATGGAAACAAGAAGTTTACGTGCGATCAGTGTGACAAATCTTTCCATAGGCATTACTATCTTATTGAGCATCGTCGCATACACACTGGCGAGCGACCCTTCCAATGCACAATTTGCGGCAAAAGTTCTACAACAAAAACGAATCATAATAAGCATTTGAAGATACATCATTCGCGGGATCCCTTCACGGTGGAGGTTTAA
Protein Sequence: MVESVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIASNPMGPGNALATAMLSGVAAADASAAIADVKPALVGLNETSSATAAKSTTDSNPSAATATKPSAGPSSVSSLPPPLSSAATAETHFVGSSKPHSNINSNKLNNPPSKGLKNAPPAATAATTSASTSSISRSDGGKQQQQHQQTPQHFVRASTTEAALAATPTTTNTAAYQQLLAEDYRYEPHQQQQQLHAFQHTSRGGMSTTTSLAYSAAALNLQPQQQQHHYITQQQPRHSQVTAPQQAQYAQPSLKYTYATALPPPPPLQLFTQQSSAAQSAQHQKPPPAYGAAISQIRSQHNQNKQQQQQHITIHQIAPPTATVTATTTTKHSKSNATAHTELFLNPPPPPQPHAMTVAQKYLVESASTSSIRLQQQQQPQHVQQTTQQTQQAPTNLNMPLQAFGPLLPSISQQKPSSSCQSSPARSAVASRQSNSPFGALLTAAAAVACASPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDEEEDEDDDENEEQQNIDHIEDGDDEQEDSRSRASVNTKKQRVSKLSKTKAKSGKRSTVADPDEEEFMSVSSSSESEEVDQKETQEVSPSAQAAASTAPSPSVSVAATKGSSGVTNSGDANSNSNTNGSNSGNVKSKKNRITVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPLDEEYDDELTSRFNATDNDTGRQSNQQQLEAEQKPSLEEQLHGLTSSSSHATTSVIRMASTNTQQQTSTGEDLPLPLMKFEAECTVLLPQRMSTNVQQRGPKKLVIKPKSTTTTAAKTTNKKTDNSTSISNTTEPIASTSTAAAQSLSISKAAVNEVQIKSEQGETPSNSGSILEKHLTTSFHNAAKQARKHSSVNDDDARVLLEFANSKQPPVSGSASTTFVVNASFPSANSVFATNSATSASPTTPKYEANPNDEYILPDNNLDEIVISSSSSFASSLQQPAATSTLPTTVQQEQQNQQQSQATPSFNDFNFLYQSNAATCYDNNVVKASNSGSGNFTAFAFQQQPHAASEATNAATVASSSSSSSAGSAILDHDSMNATFRVAKAARDQQQQGLGSSATDGSSWYQHQAQPHDGAQPTNFNAALAAVDCCSAAVDSDASDAKYLDLDACKREQLSGSSSSNSLGTAAHLPSASASTTSSSFAAAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISTRYFRNQFSGVYNQMPDWRTDYYPAQDLSSQQRESKRFDFRLPVDVPNVSVADYMFATQDNPEAALAAAAHAQATSSPSSSKKAKRKTAAATVTSAAGCSNSGSNSENYLLDAQPTTSSNALLAGPPIASTSRAAAAAAAASSVPTLVVPQQPKPPRRKIYKCPHCEFIFDKLKDRNAHMISGHNYVRQNRRLICTQAAVVTSTITSAAATAQLLPPQPQLLPIAASSSGAVQYDIVEDSKDGIVKIKQEHCQEQQQKTLPARRDTLTASLGQLHAKTELPDVSDAGLLVEPSSTDIKPHDAMLSELDQKPTMAPLAITTPAAKLAALYRMLIIYNESKLGQDRSISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHMGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFRRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQFDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336166;
90% Identity: iTF_00336166;
80% Identity: -