Ccau003475.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000045.1:6900559-6906838[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 1.3 9.8 0.8 1 23 1445 1468 1445 1468 0.97 2 13 8 6.2e+02 1.3 0.2 1 23 1648 1670 1648 1670 0.91 3 13 0.00018 0.014 15.9 2.7 2 23 1673 1694 1673 1694 0.97 4 13 6.9e-05 0.0054 17.2 0.2 3 23 1702 1722 1700 1722 0.98 5 13 5.5e-07 4.3e-05 23.8 4.0 2 23 1729 1750 1728 1750 0.97 6 13 5.4 4.2e+02 1.8 0.4 5 23 1763 1781 1761 1781 0.96 7 13 1.3 1e+02 3.7 5.4 3 23 1788 1809 1786 1809 0.93 8 13 0.14 11 6.8 0.2 2 23 1820 1840 1819 1840 0.96 9 13 7.3e-05 0.0056 17.2 0.4 1 19 1846 1864 1846 1868 0.95 10 13 1.6e-05 0.0012 19.2 0.5 1 23 1876 1898 1876 1898 0.98 11 13 0.0001 0.008 16.7 7.6 1 23 1904 1926 1904 1927 0.96 12 13 0.0002 0.016 15.8 5.9 1 23 1932 1954 1932 1954 0.98 13 13 0.0017 0.13 12.9 6.0 1 23 1960 1982 1960 1983 0.96
Sequence Information
- Coding Sequence
- atggTCGAAAGCGTGCAATGTCCCGTGTGCACTTTGTACTTGCACGCGGGCATGAACCTCTCCGATCATCTGGAGACACATCCCAAGGAGCAGGTTATCAAAGCGCTTGTGCAAATGACAATCGCAGGCAATCCAATGGGAGCAGGGAGCGCTTTGGCGGCAGTGCTGACAGGTGCAGCCGCCGCAGTTGATGGAGGCGCTACAGCCGCTGATGTGAAACCAGATGTGGTAGCGACAAGCGGAGCCAGTCCATCGTCAATAGCACAACCTGCCACAGACAGTAACCCAACAGCTATAGCAACAAAATCCAGCGCAGCCCCAACATCCGCAAGTTCTTTGCCGCCGCCTTTATCTTCAGCTGCCTCTGCGGAGACGCACTTTGTCGGCGGCAGTAAACCACatagcagcaacaaattgaataatCCACCGATTAAGGGACTGAAAAGCGCGACACCCGCCGCAACAGCCACCGCAACCTCTGCTTCAGCCTCCTCCGCCATTGGCCACCGCGATGGtagcaaacagcagcaacaacagccactGCAGCATTTTGTACGTGCTCCAACGACTGAGGCAGCACATGCAGCCACACCCACCACTACCAATACGGTCGCCTATCAGCAGCTACTTGCAGAGGACTATCGCTTTGAACCgcatcaacagcaacagccgcagcagtTGCATGCTTTCCAGCACACAAGTCGAGGAGGCATGGCTACCACGACAACGCTTGCTTATAGTGCCGCTGCCTTGCAActgcaaccacaacaacaacagcagcaccaCTATctggcacaacaacaacaacagcaaccacggCACGGTCAAAACACAGCTCAGCAACAGGCCCACTATACACAGTCAAGTTTGAAGTATGCCTATGCCACAGCGTTACCACCCCCACCCCCACTGCAGCTTTTTACCCAGCTGTCAACGACAGCGCAGTCGTCGCAACATCAAAAGCCACCGCCAGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCACAACcaaaacaagcagcagcaacaacacataACCATACACCAAATTGCACCACCGACATCAACCgtaacagccacaacaacttcaacaaaGAACAGCAAAAGTAACGCAACCGCCCATGCAGAACTCTTCCTGAATCCCCCACCGCCGCCACAACCCCAGGCAATGCCTGCGGCACTAAAATACATAGGCGAAACAGCGCCAACATCGTCCATAagactgcaacaacagcaaccacaacaacatcagcaaacaacccaacaagcaacacaacaaactCAACCGCCAACAACTAATCTGGCCATGCCGTTGCAAGCCTATGGCTCCTTATTGCCTTCaataacacaacaaaaacccaGCAGCAATTGTCAATCTTCTCCAGCGCGTTCAAACGTTGCTGCCAGTCGTCAGTCCAATTCACCTTTTGGTGCTTTGctgacagcagcagctgccgcgGCCTGCGCGTCACCCTCGTCAGTGCTGCGTTATGCGGAGTCGCCAGTAGCTCACTATCTAGAGCGCGAAAATGGTGACTTTATAGTACAAGAAACACCTAAGCACATAGTGGAGTGTGTGGAAAAGGAAGATGGTGAGTTTTCGGTAATAGAACGTATCTATCAATCGCCGCCAAGCGTGCTACACATACACGATGACGAtgaggaggaagaggaggatgatgatgaggacgACGAAGACGAGCAGCAAAACATTGAGCATCTAGAGGATGGCGATGATGAGCACGAAGACAGTCGCAGTCGTGCatcaagcaacaacaaaaagcaacgcCTGAGCAAGCTAAGCAGGGCAAAAGCCAAGTGTGGTAAACGGTTGTCGGTAGCAGAGCTGGATGAGGAGGAATTCATGAGTGTCAGCAGTAGCTCTGAATGTGAAGAGttgcaacaaaagccaacacaAGAAGTCCCGCTCAGCGCGCCAGGAACTGTATCGACTATGCCTTCCAGCGCCAGTGTTGTGCCGCCAAAAGCCACTAGCGGAGCGGCTAATTCTGGTGATGCTAATTCCAATTCCAATACAAATGGCAGCAACAGTGGCaatataaaatccaaaaagaaTCGCGTAACAGTGCTTAGCGATGTGCCCTTGAATATGAATGAGTATTTGGATTTGGTGGGCAATATTGTGGCGTCCAGTCGCATTGGCGCAGCCAGGCCCTTTGCTGCTGTGGCACCTTTACCCTTGGTTAAGGTCGAAAAGGAAGAACCGCTGGATGATGAGTATGATGATGAGCTTATGTCACGTTATAATGCAACGGAGAATAACGCAGAGCGGCAGTCtaatcagcagcagctggagGCGGAACAAAAACCCAGCTTGGAGGAGCAGCTGCAGGGCGTAactagcagcagcagtcatGCCACAACCAGCGTTATACGTATGGCTAGCACAAAtacacagcaacaaacacCTGCAGGAGAAGATTTACCACAGCCGCCAATGAAGTTTGAAGCCGAATCCACAGTGCTGTTACCGCAGCGTTTCTCATCAAGCGTACAACATCGTGGACCCAAGAAATTAGTCATCAAACCAAAGTCAACTACGGCAACGACGACGGCTGGAAAGACATCCAACAAAAAGACTGACAAATCCACCAGCAGTAGCAATACCACAGAACCCATAGCTTCCACATCCACTGCAGCCGCACAATCACTGAGCATatcaaaggcagcagcagcaagtgaGGTGCACATCAAAAGTGAGCAGAGCGAGACACCTGCAAGCAGTGGCAGTATTTTGGAGAAACATCTGACCACCAGTTTTAACTATGCAGCAAAGCAGGCGGCACGCAAACATTCTAGTGTCAATGATGATGACGCTAGGGTATTATTAGAGTTCGCCAACTCCAAGCAGCCGCCAGTAAGTGGCTCAGCTAGCACGACATTTGTGGTCAATGCCAGTTTTCCCTCAGCTAATTCCGTGTTTGCCACAAATTCCACGGCCAGTGCCAGCGGCGGCAACGCTGCACAATACGAGGCCAATCCAAATGAGGAGTATATTTTGCCCGACAACAACTTGGATGAGATTGTGATATCCTCGTCATCTTCCTTTGCATCCTCGTTGCAACAACCGCCAGCAACACAGTCAACACTAGCAGCGTCtgtacagcagcagcagaaaagtcagcagcagccgcaagcAGCGCCTTCCTTCAATGATTTTAACTTTCTCTATCAGTCCAGCGCAGCAGCTACATGCTATGATAATAACGGTGTCAAGGCGTCtaacagcggcagcggcaacttTACAGCGTTTGCCTTTCAGCAGCAGCCCCATGCCGCCGCCAGTGAAGCCACAAACGCCGCTACTGTGGCGTCCTCTTCTAGTTCATCATCAGCGGGCTCGGCCATTATGGATCATGATTCAATGACTGCCACATTCCGTGTGGCCAAGGCCACTAGAgatcaacaacagcaaggtCTAGGCAACTCTGCCGCCGATGGCAGCTCCTGGTATCAGCATCAGGCACCACCGCATGATGGCGCGCAGCCTACCAATTTTAATGCTGCCTTGGCAGCAGTTGATTGCTGCAGTGTGGCCGTGGACAGTGATGCCAGCGATGCCAAGTACTTGGATTTGGATGCTTGTAAAAGAGAGAATTTGAGTGGAAGCAACAGCAATTCTTTGGGCACTGCAACGCATTTGCCTTCCGCATCGGCATCAACAACTTCCTCTTcatttgctgcagctgctacTGAGAGCAGTCTGGTTGGTGGTTTAAATATACGCACCGATGAAAAGATGCCCGCCAAGGGCGAGATCTCCGAGCAGGAAAGCAACTGTGACATTGAGAATTCTTGGAGTCAATCGATGTATGGCGACATATCACCACGTTACTTTAGAAACCAGTTTTCGGGCGTTTATAATCAAATGCCGGATTGGCGACCGGACTATTATCCAGCGCAAGATCTCAGTTCGCAACAGCGTGAGAGCAAGCGATTCGATTTTCGTCTGCCGGTGGACGTGCCCAATGTCTCCGTGGCCGATTACATGTTTGCAACTCAGGATAATCAGGAAGCAGCGCTGGCCGCCGCCGCCCATGCCCAGTCGTTATCCTCGCCCAGCAGTTTAAAAAAGGGAAAACGAAAGTCTGCAGCAGCCACGGTTACCAGTGCTGCaagtagcagcaacagcagtagCAACTCCGAGAATTACTTATTAGATGCACAGCCCACCACATCGTCAAACGCATTGCTGGCTGGTCCACCAATAGCCTCGACATCTCgggctgccgctgctgcagctgccgccTCCACAGCGCCTGCACTTGAAGGCCCACAGCAACCCAAACCACCGCGTCGCAAGATTTATAAGTGTCCACACTGCGAATCCATTTTCGACAAGCTCAAGGAACGTAATGCACACATGATAAGCGATCACAACTATGTGCGTCAAAATCGTCGTTTAATTTGCACCCAAGCAGCAGTGGTTACCTCTACCATAACGAgtgctgcagcaacagcagcagctgctcaaCTGTTGCCACCGCAGCCTCAGCTACTGCCTCTAGCCgccaccagcagcagcggcgtaGTCCAATACGACAACATTGTGGAAGATTCAAAGGATGGCATTGTCAAGATCAAGCAGGAACATTGCCATGATCAGCAGCAAAAGGTACCGCCTGCGCGTCGTGACACTTTGACTGCTTCGCTGGGTCAGCTTCATGCTAAGACCGAGCTGCCAGACGTAAACGATACGGGTATGCTTGTAGAAGCCAGCAGCGCCGACATCAAACCTCACGATGCATTGCTCTCCGAGCTAGATCAGAAGCCACCCATACAACCATTAGCTATGACAACACCAGCTGCGAAACTGGCGGCACTCTATCGTATGTTAATAATTTACAACGAATCCAAGCTGGGTCAGGATCGCACTATTAGCGAGCTCGAACAAAAGGCAATGGAAAAATCCATCTTCCTGTGCTACGTATGTCGGACCGATTTTCCCTCCGTGAAGCTATATGATGCGCATCTAACCGAGCATCCAGCCGAGTGTTTTACCTGCGGTAAAAAGTTTTATCGCTGGAAGAACTTTTCGCTACATTTGAAGCGTCATATGGGCTGGAAGGAGTTTGGTTGCTATGTATGCGATAAGAAGTTTGTGGTGCGTAGCGCACTGGTGGAGCACATGCGCATGCACACGGGCCAGACTCCGCTCAAGTGTAAGATATGCGGTAAAAAGTTTAGGCGCTATTCGAACTTGACGCAGCATCGAAAGCGTCACACCAAGATGACGGTGCGCAAAAAGGAATATGTATGCCACTGCGGCGAGGTATTACCCTCCAAGGCACGGTTTTTGTGGCACAAGGAAACGCATGACTTGAAGCCGAAATGCTGTCCATATTGTTGCGATCGCTTTGTGCATGCCAACTCGCTGCGTCGTCACATACGACTTGCTCACTCCGATAAATTCGATTATGCCGAACCGATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACCTCCATCAAGGCGCATATGGCCACACACTCAACGGATCCGCAATTTGACTGCGCCATCTGTAATAAGTCCTTTTCGACCAAATGGAATCTCAAGATACACTCCTGGGTGCATGCCAATCGCACGGCGAAACCATTCAAATGTGAGTACTGCCCCAAGGCTTTTGTGCGCGAACTCGACTTTAAGAACCACATGAATGCACACAAGCAGATCAAGCCCTATACTTGCGAGTATTGCGGTTGCAAGTTTATACGCAAATACAACTATATGCGGCATCGACGCGAGCATCATGGGAACAAGAAGTTTACGTGCGATCAGTGCGACAAGTCTTTCCATAGGCATTATTATCTGATTGAGCATCGACGCATACACACCGGCGAGAGACCCTTCCAATGCACCATTTGCGGCAAGAGttctacaacaaaaacgaatCATAATAAGCATTTGAAGATACATCATTCGCGAGATCCCTTCACTGTGGAGGTCTAA
- Protein Sequence
- MVESVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNPMGAGSALAAVLTGAAAAVDGGATAADVKPDVVATSGASPSSIAQPATDSNPTAIATKSSAAPTSASSLPPPLSSAASAETHFVGGSKPHSSNKLNNPPIKGLKSATPAATATATSASASSAIGHRDGSKQQQQQPLQHFVRAPTTEAAHAATPTTTNTVAYQQLLAEDYRFEPHQQQQPQQLHAFQHTSRGGMATTTTLAYSAAALQLQPQQQQQHHYLAQQQQQQPRHGQNTAQQQAHYTQSSLKYAYATALPPPPPLQLFTQLSTTAQSSQHQKPPPAYGAAISQIRSQHNQNKQQQQHITIHQIAPPTSTVTATTTSTKNSKSNATAHAELFLNPPPPPQPQAMPAALKYIGETAPTSSIRLQQQQPQQHQQTTQQATQQTQPPTTNLAMPLQAYGSLLPSITQQKPSSNCQSSPARSNVAASRQSNSPFGALLTAAAAAACASPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEEEEEDDDEDDEDEQQNIEHLEDGDDEHEDSRSRASSNNKKQRLSKLSRAKAKCGKRLSVAELDEEEFMSVSSSSECEELQQKPTQEVPLSAPGTVSTMPSSASVVPPKATSGAANSGDANSNSNTNGSNSGNIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPLPLVKVEKEEPLDDEYDDELMSRYNATENNAERQSNQQQLEAEQKPSLEEQLQGVTSSSSHATTSVIRMASTNTQQQTPAGEDLPQPPMKFEAESTVLLPQRFSSSVQHRGPKKLVIKPKSTTATTTAGKTSNKKTDKSTSSSNTTEPIASTSTAAAQSLSISKAAAASEVHIKSEQSETPASSGSILEKHLTTSFNYAAKQAARKHSSVNDDDARVLLEFANSKQPPVSGSASTTFVVNASFPSANSVFATNSTASASGGNAAQYEANPNEEYILPDNNLDEIVISSSSSFASSLQQPPATQSTLAASVQQQQKSQQQPQAAPSFNDFNFLYQSSAAATCYDNNGVKASNSGSGNFTAFAFQQQPHAAASEATNAATVASSSSSSSAGSAIMDHDSMTATFRVAKATRDQQQQGLGNSAADGSSWYQHQAPPHDGAQPTNFNAALAAVDCCSVAVDSDASDAKYLDLDACKRENLSGSNSNSLGTATHLPSASASTTSSSFAAAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISPRYFRNQFSGVYNQMPDWRPDYYPAQDLSSQQRESKRFDFRLPVDVPNVSVADYMFATQDNQEAALAAAAHAQSLSSPSSLKKGKRKSAAATVTSAASSSNSSSNSENYLLDAQPTTSSNALLAGPPIASTSRAAAAAAAASTAPALEGPQQPKPPRRKIYKCPHCESIFDKLKERNAHMISDHNYVRQNRRLICTQAAVVTSTITSAAATAAAAQLLPPQPQLLPLAATSSSGVVQYDNIVEDSKDGIVKIKQEHCHDQQQKVPPARRDTLTASLGQLHAKTELPDVNDTGMLVEASSADIKPHDALLSELDQKPPIQPLAMTTPAAKLAALYRMLIIYNESKLGQDRTISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHMGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFRRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQFDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336166;
- 90% Identity
- -
- 80% Identity
- -