Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000006.1:17897090-17900668[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 6.2e-05 0.005 18.2 2.3 2 23 12 33 11 33 0.96

2 24 0.00084 0.068 14.6 3.8 2 23 84 106 84 106 0.97

3 24 0.00013 0.011 17.1 0.3 1 23 156 179 156 179 0.97

4 24 0.0016 0.13 13.7 0.2 1 23 235 257 235 257 0.97

5 24 0.015 1.2 10.6 5.6 2 23 269 290 268 290 0.96

6 24 0.025 2 10.0 1.7 2 23 302 323 301 323 0.96

7 24 0.003 0.24 12.9 1.0 1 23 333 355 333 355 0.98

8 24 0.007 0.56 11.7 7.2 1 23 383 405 383 405 0.97

9 24 0.0021 0.17 13.4 3.0 1 23 416 438 416 438 0.98

10 24 0.00021 0.017 16.5 1.1 1 23 446 468 446 468 0.97

11 24 0.00052 0.042 15.3 0.1 2 23 488 510 487 510 0.97

12 24 0.033 2.6 9.6 1.0 1 23 528 550 528 550 0.93

13 24 0.19 15 7.2 3.7 1 23 557 579 557 579 0.96

14 24 0.013 1 10.9 0.7 2 23 590 612 589 612 0.95

15 24 0.0029 0.23 12.9 0.3 1 23 634 656 634 656 0.97

16 24 6.8 5.5e+02 2.3 6.0 2 23 699 721 698 721 0.94

17 24 0.005 0.4 12.2 0.2 2 23 737 758 736 758 0.95

18 24 2.7 2.2e+02 3.6 5.5 5 23 768 786 766 786 0.94

19 24 0.013 1 10.9 0.8 2 23 797 819 796 819 0.95

20 24 0.22 18 7.0 2.2 3 23 837 854 836 854 0.88

21 24 0.14 11 7.7 1.8 2 21 858 877 858 878 0.93

22 24 0.99 79 4.9 2.6 2 23 926 947 925 947 0.93

23 24 0.004 0.32 12.5 0.7 2 23 958 980 957 980 0.95

24 24 9.7 7.8e+02 1.8 1.0 2 20 1018 1036 1018 1038 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	6.2e-05	0.005	18.2	2.3	2	23	12	33	11	33	0.96
2	24	0.00084	0.068	14.6	3.8	2	23	84	106	84	106	0.97
3	24	0.00013	0.011	17.1	0.3	1	23	156	179	156	179	0.97
4	24	0.0016	0.13	13.7	0.2	1	23	235	257	235	257	0.97
5	24	0.015	1.2	10.6	5.6	2	23	269	290	268	290	0.96
6	24	0.025	2	10.0	1.7	2	23	302	323	301	323	0.96
7	24	0.003	0.24	12.9	1.0	1	23	333	355	333	355	0.98
8	24	0.007	0.56	11.7	7.2	1	23	383	405	383	405	0.97
9	24	0.0021	0.17	13.4	3.0	1	23	416	438	416	438	0.98
10	24	0.00021	0.017	16.5	1.1	1	23	446	468	446	468	0.97
11	24	0.00052	0.042	15.3	0.1	2	23	488	510	487	510	0.97
12	24	0.033	2.6	9.6	1.0	1	23	528	550	528	550	0.93
13	24	0.19	15	7.2	3.7	1	23	557	579	557	579	0.96
14	24	0.013	1	10.9	0.7	2	23	590	612	589	612	0.95
15	24	0.0029	0.23	12.9	0.3	1	23	634	656	634	656	0.97
16	24	6.8	5.5e+02	2.3	6.0	2	23	699	721	698	721	0.94
17	24	0.005	0.4	12.2	0.2	2	23	737	758	736	758	0.95
18	24	2.7	2.2e+02	3.6	5.5	5	23	768	786	766	786	0.94
19	24	0.013	1	10.9	0.8	2	23	797	819	796	819	0.95
20	24	0.22	18	7.0	2.2	3	23	837	854	836	854	0.88
21	24	0.14	11	7.7	1.8	2	21	858	877	858	878	0.93
22	24	0.99	79	4.9	2.6	2	23	926	947	925	947	0.93
23	24	0.004	0.32	12.5	0.7	2	23	958	980	957	980	0.95
24	24	9.7	7.8e+02	1.8	1.0	2	20	1018	1036	1018	1038	0.91

Sequence Information

Coding Sequence: ATGCTCTCTGATACCAGTGGCAATGGCCCCCTCCAGTGCAACTACTGCGATAAGAGATTTAAGTATCGGAAGTCTTTAGTGAATCATGAATTAAAACACTCTAAAGTGGAAGTGAAAATGGAAGACGAAGTTATGCCGTCGAGCAGCGCTGTACCGGCggacgcggcggcggcggcggcagagGCGGCCGCGTACCGCGAGGAGTCTGCGTCCAGCGGCAGCGGCAGTGGCGAGGAGGGCGACGACAACACCTGCGATATTTGCGAGAAGCAGTTCTCTTACAAGCGTCTGCTCGTGCATCACAAGCGTACCAAGCACAACATGAGCTCTGGCACTAAACGAGCTTCCATCATTCTCAAAGACTGTCTTGTGCGATGTCTTATATGCGATATCGACATGAAAGTGAGTGAGGTGAACGAGCATAATCAGAAACATATAAAAGCCAATATGAAGCCGCGTAATTTGTATACATGCCTTGATTGCGGAGAGAAATTTAAAAGTCGTACGGTGCTGGCTAACCATATCAAACTAGTACACAGACTCAAGCAGGTGCCGCCTAAACAATTCGAAGGCGCAGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAGCCCCTGGACGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGAAGAGCAAGACTACTCTCCGTCAATAAATCTAAGTGGTTTTACTTGCACCATCTGCGGGAAGAATATGCCCACTCTGATTTCACTTAAACGACATGTAAACTGGCATTCAAATGTTGGAAACCAATTagagaaaaaaattgaatgCTTTGTTTGTAAAGAGacgtTCCGGTTTCAATGTCACTACAAGTTACATATGCGTGACCATTATCGCGACACTAATCTCGACCCTAAATTCCTCACCTGCAACATCTGCAATCGAAAAAGCAAACACTTGAGGGCAGCTCAAGCTCACATGAACTACCACAAACAGACAAGGTTCCAGAATAAAGACTACCAATGTTCCATTTGTAAACGCGTCTTccaatatcgaaaggtttactTGTCGCATATGGCGATACATTATAAGCGTGGCGAGAGTCAGAATACTATAGTAGGGGACGCACTGCCTAACACCGTTGATAAATCAGTTTTTGATGGGACGCATACTTGCCTCCACTGCGGTAAGGTTTGCGACTCTGAGAATTCATTAAAACATCATATGTCTTGGCACAATTCCAAAACTTTGTTGTTCGGAGCGCGTCACGAGTGCCCGATTTGTAAAATCACGTTCACTAATAAAAAAAGACAAGAGTTGCATACGAGAACTCATTATGAAGATGAAAATGGTCCTTTCAAATGTACGATATGCGGAAAGGGATACAACGACGAGAACTTTTTCCGAAGGCACGTCAAAGGACATAATTTCGACCATCAGTCCCACAAAAAAAGAATAGAGAAGTTAAGAAAAGATAAAGTAAAATGTCCAATTTGCGTACGCTACTACCCGGATTGGGTAAAGCTAATCCGTCACCTGCGGCGCACGCACCCTGAGAGCAAGATGGTGAAGCAGGACCCGgaggcgccgccgccgcgcgccttCGCCTGCAAACTGTGCGCGCGCGTCTTCCGCGACGAGCGCCGTCTGCGCCACCACGAGGAGGCCCATTTGCGCAAGCCGGAGTTCTTTAAGTGCAAATTCTGCGGCAAGAAAACCATCTCGCTCAAGAACCACAACTTGCACATCAAGGGCCATCTCACCACCAAGCACACTGACAACCCTCTCAAGTGTCCCCAATGCGAGGAGCGATTCGTCAAGGGATATGATTTGCATTATCATTTACGAGATGTGCATGACATCAATGAGACGTGGATTGCGGATCGCACTGAGCAAACTTTGAATGGCCCATTGAAAGAGTTCCAATGCTCTATTTGTCTCAAAATTCTTGCTAGTAAAGGAAACTATGAGAGGCACTTGGACTACCACAATTCTCTAAGATGCAACTACTGCTATGACTATTTCAGTTCCCTGAGGTTCCTTGAAGGCCATCTCACTTTCAGTTGTGACAAAAAGAAGTTGGTTGGTGATACTGAAATGTTTCCACGAAAGATTAAATGTCACATCTGTTATAAAGCATTCCATTTACAAGTTAAATTAGACTGTCATCTTCGCACACAACACAACATAAAGGTATCCAAGGAAGCCTCCAAGAGCAGGAAGGATCTTGTATGTGATTATTGTTTCCGAGTTTTTGAAAACATAGATGCTTTGACGACGCATAAAATATATCACCGCACGGTTGGTTATTTCGGATGCATATACTGCAAGAGGAAATTTAACACATTGACTCTTTATAGAAAGCACAAAAATCATCACTTCGCTCAGTTAAATGTCGATAACCCAACTAAATGTGAACATTGCGATGAGACTTTCGTCGCTTTCAGAGAAATGATTTACCATATGAGAGATGTTCACGGGGACGACAAAGAGTGGCTTGTAATGCCCAAAGAATCGATCGAGGAGATGTGCCCTATCTGTAACAAGGTGTTCTTCAACCTGCACCGGCATTTAGATTATCACGAAACGAACCGATGTAAAAAATGCGGCGAGTACTTCTACTCGCGAACCGACTTCGACAGTCACCTCTGTGCCATAGAGAGCGATGACGAGGCGAGCTGCGCCGACCAGGGTGCGCGACCGCAGTACGAGGAATGCCGGTTCTGCTTCAAACCCATAACCAGGAAGAGCTCTAAGGCAAAACACGATCACATTCACAAAGGCTCTGGATCCATTTCTTGTCGATTCTGCTCGCATAAGTTTAAAACGATGGATGCGTTTAACATACACGCTTTCTCTCACCGTAGtcgaaaatataaaactaatccGTTAAAATGCCGAAAATGTGgagaaaaatttattaaatatggaCCATTCATGAAACATATGAAGGAAGTGCACAATTCCATTCAAAAAATGCATTATCGAGCGACTGTGAAGGCGGAACGTTGCGTGGTGTGTGGAGACGAATTCCCCAACCTGCACAACCACTACCGCGCACACTTGCAGAACCGTTGCCAAGCGTGTCTCAAGTACTTTACTTCGTCACGCTTGTTCGCCGAGCACGAGTGCGCCAAGCCCGACGCCGACCCCACCAAGGTCTTCACGTCTGAACAGAACTTAACCTTACTGATCAATACTTACGTCCCTAAGGACGACGTAGACGAACAAAAACATTATGGTCAAAGCACCGATGATCATGATGACGCCAATACTCTGCAGGGAGTGGCTGACGAGGAAAGTCAAAACTCGAATGAGAATGATCATTTCCGACTTCAGTGTCCCATTATATCTGATGTGCTGTCACTGTACCAGAAGCAAGAAGCGGGTGGCACTGACGAAGGCGACGACGCGGATGACGTCGTCGCCGTTACCGACGAGGTGATTGCGCTCTCAGACGACGACGTGGGCGTACTGGACAACGACAGCTGTCCCACTATAACTATAGACGATGATGATTAA
Protein Sequence: MLSDTSGNGPLQCNYCDKRFKYRKSLVNHELKHSKVEVKMEDEVMPSSSAVPADAAAAAAEAAAYREESASSGSGSGEEGDDNTCDICEKQFSYKRLLVHHKRTKHNMSSGTKRASIILKDCLVRCLICDIDMKVSEVNEHNQKHIKANMKPRNLYTCLDCGEKFKSRTVLANHIKLVHRLKQVPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPEEQDYSPSINLSGFTCTICGKNMPTLISLKRHVNWHSNVGNQLEKKIECFVCKETFRFQCHYKLHMRDHYRDTNLDPKFLTCNICNRKSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDALPNTVDKSVFDGTHTCLHCGKVCDSENSLKHHMSWHNSKTLLFGARHECPICKITFTNKKRQELHTRTHYEDENGPFKCTICGKGYNDENFFRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKQDPEAPPPRAFACKLCARVFRDERRLRHHEEAHLRKPEFFKCKFCGKKTISLKNHNLHIKGHLTTKHTDNPLKCPQCEERFVKGYDLHYHLRDVHDINETWIADRTEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLVGDTEMFPRKIKCHICYKAFHLQVKLDCHLRTQHNIKVSKEASKSRKDLVCDYCFRVFENIDALTTHKIYHRTVGYFGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWLVMPKESIEEMCPICNKVFFNLHRHLDYHETNRCKKCGEYFYSRTDFDSHLCAIESDDEASCADQGARPQYEECRFCFKPITRKSSKAKHDHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRSRKYKTNPLKCRKCGEKFIKYGPFMKHMKEVHNSIQKMHYRATVKAERCVVCGDEFPNLHNHYRAHLQNRCQACLKYFTSSRLFAEHECAKPDADPTKVFTSEQNLTLLINTYVPKDDVDEQKHYGQSTDDHDDANTLQGVADEESQNSNENDHFRLQCPIISDVLSLYQKQEAGGTDEGDDADDVVAVTDEVIALSDDDVGVLDNDSCPTITIDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342508; iTF_00410604; iTF_00010452; iTF_00009369; iTF_00660569; iTF_00658714;
90% Identity: iTF_00342508;
80% Identity: -