Edem042845.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia demarniana
Gene Symbol
TY3B-I
Assembly
GCA_945869435.1
Location
CAMBUM010001064.1:2696-10167[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00022 0.022 16.7 4.9 2 23 110 131 109 131 0.97
2 24 0.0017 0.17 13.9 3.7 2 23 184 206 184 206 0.97
3 24 1.1e-05 0.001 20.8 1.1 1 23 256 279 256 279 0.98
4 24 0.0052 0.51 12.4 0.2 1 23 335 357 335 357 0.97
5 24 0.018 1.7 10.7 6.1 2 23 369 390 368 390 0.96
6 24 0.044 4.3 9.5 1.8 2 23 402 423 401 423 0.96
7 24 0.004 0.39 12.7 1.0 1 23 433 455 433 455 0.98
8 24 0.0092 0.89 11.6 7.2 1 23 483 505 483 505 0.97
9 24 0.0066 0.64 12.0 2.3 1 23 516 538 516 538 0.98
10 24 0.00017 0.016 17.1 0.7 1 23 546 568 546 568 0.97
11 24 0.00069 0.067 15.1 0.1 2 23 588 610 587 610 0.97
12 24 0.012 1.2 11.2 1.7 1 23 628 650 628 650 0.96
13 24 0.25 25 7.1 3.7 1 23 657 679 657 679 0.96
14 24 0.031 3 9.9 1.1 2 23 690 712 689 712 0.95
15 24 0.0038 0.37 12.8 0.3 1 23 734 756 734 756 0.97
16 24 4.4 4.3e+02 3.2 3.9 2 23 799 821 798 821 0.94
17 24 0.024 2.3 10.3 0.1 2 23 837 858 836 858 0.92
18 24 1.6 1.6e+02 4.5 4.5 5 23 868 886 865 886 0.94
19 24 0.017 1.6 10.8 0.8 2 23 897 919 896 919 0.95
20 24 0.97 95 5.2 3.2 3 23 937 954 936 954 0.88
21 24 0.073 7.1 8.8 1.0 2 21 958 977 958 978 0.94
22 24 1.3 1.3e+02 4.8 2.6 2 23 1026 1047 1025 1047 0.93
23 24 0.00093 0.091 14.7 0.3 2 23 1058 1080 1057 1080 0.95
24 24 9.5 9.3e+02 2.1 1.4 2 19 1118 1135 1117 1137 0.89

Sequence Information

Coding Sequence
ATGCCGGGGGCTAAATACTTTAGTGTCTTAGACGCCTCTAAGGGATTTTACATGATCAAATTGAGTGATGACAGTCAACTTATTACCACATTTAATGCTGGCAATTTTGGTAGATATTGTTATAAAAGATTGCCTTTTGGATTAAATTCATCACCAGAGGTTTTCAGTAAATGTTTTGCTGACATTTTTAAAGATATAACAGGAGTAGAACAATATGTTGATGAACTTATAGTATGGGGGGAAACTCTAGAACAGCATGATGAAAGGCCAAGCACCATTGAAGATTCCTCGTCAATAATGTCGGACAATAGTGGAAACGGTCCTCTGAAGTGTAAATATTGTGACAAACatttcaaatataaaaaatcgTTAGCAAACCATGAGATGAAACATTTCGAACTGGAAAAAACTGAGAAAAATCAAAAACGAGAAAAGGCTGCCAACGAAGACACAGAAGCGGAAGGGAACGCTTCGAGCAGCCTGTTGAACGAGTCGTACCGCGAGGAAGACGAGGAGGAAGAGTCGAGCCAGGAGGAGGGCGACGACAACACTTGCGACATCTGCGAGAAGCAGTTCTCGTACCGGCGGCTGCTCGTGCACCACAAGCGCACCAAGCACAACATGAGCTCCGGCACCAAGCGCGCCAGCGTCGTGCTCAAGAactgccgcgcgcgctgcctCGTCTGCGACCTCGAGATGAGCGTCGGCGACATCAACGAACACAACAAGCAGCACATCCAGCAGAACATGAAACCGCGCAATCTGTACACGTGCACTGATTGCGGTGAGAAGTTCAAGAGCTGCAACGCTCTGGCCAACCACATCAAGATGGTTCACAGGCTCAAGCGGCTGCCGGCCAAGCAGTTCGAAGGTGCTGATCTTGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGAGGAGCAGGAGGGCTCGCCCTTGGTCAATCTCAGTGGATTTAATTGTACTATTTGTGGAAAGAACATGCCCACTCTGATTTCCCTGAAACGGCATGTCAATTGGCATTCTAATGTTGGAAATAATTTAGAGAAAAAGCTAGAGTGCTTTGTTTGCAAAGAGACATTCCGGTTTCAATGTCATTACAAACTACATATGCGAGAGCACTACCGCGACACGAATCTTGATCCCAAACTGCTCACGTGCACCATCTGCAATCGGAAAAGCAAACACTTGAGGGCTGCTCAGGCGCATATGAACTATCACAAACAAACCCGATTCAAGAATAAGGACTATCAGTGCTCCATTTGCAAGCGTGTTTTCCAATACCGAAAGGTCTATCTCTCCCACATGGCAATACACTACAAGCGTGGTGAAAGCCAGAACACGATCGTGGGGGACTTATTACCTACCACTGCTGATAAAACCGTTTTTGACGGTACTCATACTTGCCTTCATTGCGGAAAAGTGTGTGACTCTGAGAACTCTCTAAAACATCATATGTCTTGGCACAGATCAAAGACTTTACTGTTTGGCGCACGACACGAGTGTCCCATTTGCCAAGTCATGTTCACTAATAAAAAGAGGCAAGAGCTACACACGCGAACGCATTATGAAGACGAAAACGGTCCATTCAAGTGCGCGACATGTGGCAAAGGCTACACCGACGAAGAATACTTCCGTCGGCACGTGAAGGGTCACAACTTTGATCACCAGTCTCACAAAGACCGCATAGCGAAGTTACGAAAGGACAAGGTGAAGTGTCCTATATGTGTGCGTTACTACCCCGACTGGGTGAAGCTGATCCGACACTTGCGGCGCACGCACCCCGAGAGCAAGATGGTGAAGCAGGACCCggacgcgcccgcgccgcgcgtgTTCGCGTGCAAGCTGTGCGCCAAGGTGTTCCGCGACGAGCGCCGCTTGCGCCACCACGAGGAGTCGCACCTGCGCAAGCCCGAGTTCTTCAAGTGCAAGTTCTGCGGGAAGAAAACTATCTCGCTCAAAAACCATAACCTACACATTAAAGGACATCTCACTTCTAAACACTTCGACAACCCTTTAAAATGCACTCAGTGTGAGGAGACGTTCATCAAAGGATATGATTTGCATTACCATCTGCGAGATGTGCACGACATTAATGAAACATGGATTGCAGAACGCAAAGAGCAAACGCTAAACGGGCCTTTGAAAGAGTTTCAATGCTCAATTTGTCTTAAAATACTTGCAAGTAAAGGCAACTATGAGAGGCACTTGGATTACCACAATTCGCTGAGGTGCAACTACTGCTACGACTATTTCAGTTCACTGAGGTTCCTAGAAGGACATCTGACTTATAGTTGTGATAAAAAGAAGTTAGTTGGTGATACTGAAATATTTCCGAGGAAGATTAAATGTAATATTTGCTACAAACCATTCCATTTACAAGTCAAATTGGATTGCCATTTGCGCACGCAACATAATATAAAAGTGTCTAAAGAAGCTTCAAAGAGCAAAAAAGACCTTGTATGTGATTACTGCTTTAGAGTATTCGAAAACCTCGATGCACTGACTGGGCACAAAGTGTATCACCGTACCATTGGTTACTATGGGTGCATATATTGCAAGAGAAAATTCAACACTTTGACACTCTACAGGAAACATAAGAACCACCACTTTTCTCAGTTAAACGTGGATAACCCTACTAAGTGTGAACACTGCGACGAGACGTTTGTCGCTTTCCGAGAAATGATATACCACATGAGGGACGTGCACGGGGACGACAAGGAGTGGCTCGTGATGCCGAAGGAGTCGATCGAGGAGCCGTGCCCCGTGTGCCACAAGGTGTTCTTCAACCTGCACCGGCACCTGGACTACCACGAGGAGAACCGCTGCAAGAAGTGCGGCGAGTACTTCTTCTCGCGCGCCGACCTGGACAGCCACCTGTGCGCCATCGAGAGCGAGGATGAGGCGGGCAGCGACGAGCGCGACGTGCGCCCCAAGTACGAGGAGTGCCGCTTCTGCTTCAAGCCCATCACGAGGAAGAGCTCCAAGGCGAAGCACGACCACATACATAAAGGCTCTGGATCTATCTCTTGTCGATTTTGTTCGCACAAATTTAAAACGATGGATGCATTCAACATTCATGCATTTTCACATCGCAATCGCAAATACAGAAAAAATCCATTAAAGTGTCGAAAGTGCGGCGAGAAATTTATTCAGTATGGGCCCTTCATAAAGCACATGAGAGGAGTCCACAAATTTGTTCAAAAAATGCACTACCGGGCGACCGTGAAGGCGGAGCCCTGCGCGGTGTGCGGGGACGAGTTCCCCAACCTGCACAATCACTACCGGGCGCACCTGCAGAACCAGTGCCCCTCGTGCCTCAAGTACTTCACCTCGAGCAAGGTGTTCGCCGAGCACGAGTGCGCCAAGGAAGACTCCGACCCCTCCAAGGTGTTCACCAGCGACAAGAACTTGCCCTGGTTGATCAACACCTATGTTCCTAAAGACGAACAGGACGAACAGAAGTATTACGGCTACGGAGATGAGGAGGAGGTCGACGGCGGCGTGCGGCTGCAGGGCCACATAATAGACGAGGAAAGTCAGAATTCGAACGAGGACTTCCAACTGCATTGCCCCATCATATCGGACGTGCTGTCGCTGTGCCACAAGCAGGAGGCGGTGGagcgcgcgcctgcgcccgcgcccgcgcccgcgcccgagtACGAGGTCATCGACCTCTCTGACGACGACGTGGGCCTGGTGGACGCCGGCGCCAACTGTCCCACCATTACTATTGatgattaa
Protein Sequence
MPGAKYFSVLDASKGFYMIKLSDDSQLITTFNAGNFGRYCYKRLPFGLNSSPEVFSKCFADIFKDITGVEQYVDELIVWGETLEQHDERPSTIEDSSSIMSDNSGNGPLKCKYCDKHFKYKKSLANHEMKHFELEKTEKNQKREKAANEDTEAEGNASSSLLNESYREEDEEEESSQEEGDDNTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRASVVLKNCRARCLVCDLEMSVGDINEHNKQHIQQNMKPRNLYTCTDCGEKFKSCNALANHIKMVHRLKRLPAKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPEEQEGSPLVNLSGFNCTICGKNMPTLISLKRHVNWHSNVGNNLEKKLECFVCKETFRFQCHYKLHMREHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLLPTTADKTVFDGTHTCLHCGKVCDSENSLKHHMSWHRSKTLLFGARHECPICQVMFTNKKRQELHTRTHYEDENGPFKCATCGKGYTDEEYFRRHVKGHNFDHQSHKDRIAKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKQDPDAPAPRVFACKLCAKVFRDERRLRHHEESHLRKPEFFKCKFCGKKTISLKNHNLHIKGHLTSKHFDNPLKCTQCEETFIKGYDLHYHLRDVHDINETWIAERKEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTYSCDKKKLVGDTEIFPRKIKCNICYKPFHLQVKLDCHLRTQHNIKVSKEASKSKKDLVCDYCFRVFENLDALTGHKVYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWLVMPKESIEEPCPVCHKVFFNLHRHLDYHEENRCKKCGEYFFSRADLDSHLCAIESEDEAGSDERDVRPKYEECRFCFKPITRKSSKAKHDHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHKFVQKMHYRATVKAEPCAVCGDEFPNLHNHYRAHLQNQCPSCLKYFTSSKVFAEHECAKEDSDPSKVFTSDKNLPWLINTYVPKDEQDEQKYYGYGDEEEVDGGVRLQGHIIDEESQNSNEDFQLHCPIISDVLSLCHKQEAVERAPAPAPAPAPEYEVIDLSDDDVGLVDAGANCPTITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00325701;
90% Identity
iTF_00660569;
80% Identity
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