Basic Information

Insect: Acleris holmiana
Gene Symbol: -
Assembly: GCA_949316455.1
Location: OX438762.1:42931867-42942071[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 4.7e-05 0.0055 18.4 2.4 2 23 29 50 28 50 0.96

2 22 0.00072 0.084 14.6 3.8 2 23 89 111 89 111 0.97

3 22 0.0064 0.75 11.6 0.1 1 23 161 184 161 184 0.95

4 22 0.00043 0.051 15.3 0.2 1 23 240 262 240 262 0.97

5 22 0.0094 1.1 11.1 5.9 2 23 274 295 273 295 0.96

6 22 0.031 3.6 9.5 1.7 2 23 307 328 306 328 0.96

7 22 0.0026 0.3 12.9 1.0 1 23 338 360 338 360 0.98

8 22 0.0014 0.17 13.7 7.6 1 23 388 410 388 410 0.97

9 22 0.04 4.7 9.1 2.2 1 23 421 443 421 443 0.98

10 22 3.2e-05 0.0038 18.9 1.1 1 23 451 473 451 473 0.97

11 22 0.00044 0.052 15.3 0.1 2 23 493 515 492 515 0.97

12 22 0.05 5.9 8.8 0.7 1 23 533 555 533 555 0.94

13 22 0.11 13 7.7 4.6 1 23 562 584 562 584 0.98

14 22 0.066 7.7 8.4 0.4 2 23 595 617 594 617 0.94

15 22 0.0025 0.29 12.9 0.3 1 23 639 661 639 661 0.97

16 22 0.012 1.4 10.8 0.2 2 23 742 763 741 763 0.94

17 22 2.1 2.5e+02 3.7 5.9 5 23 773 791 771 791 0.94

18 22 0.17 20 7.1 0.8 2 23 802 824 801 824 0.95

19 22 0.13 15 7.5 2.2 2 23 841 859 841 859 0.89

20 22 0.083 9.7 8.1 1.8 2 21 863 882 863 883 0.94

21 22 0.36 42 6.1 0.9 2 23 931 952 930 952 0.93

22 22 0.012 1.4 10.8 0.5 2 23 963 985 962 985 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	4.7e-05	0.0055	18.4	2.4	2	23	29	50	28	50	0.96
2	22	0.00072	0.084	14.6	3.8	2	23	89	111	89	111	0.97
3	22	0.0064	0.75	11.6	0.1	1	23	161	184	161	184	0.95
4	22	0.00043	0.051	15.3	0.2	1	23	240	262	240	262	0.97
5	22	0.0094	1.1	11.1	5.9	2	23	274	295	273	295	0.96
6	22	0.031	3.6	9.5	1.7	2	23	307	328	306	328	0.96
7	22	0.0026	0.3	12.9	1.0	1	23	338	360	338	360	0.98
8	22	0.0014	0.17	13.7	7.6	1	23	388	410	388	410	0.97
9	22	0.04	4.7	9.1	2.2	1	23	421	443	421	443	0.98
10	22	3.2e-05	0.0038	18.9	1.1	1	23	451	473	451	473	0.97
11	22	0.00044	0.052	15.3	0.1	2	23	493	515	492	515	0.97
12	22	0.05	5.9	8.8	0.7	1	23	533	555	533	555	0.94
13	22	0.11	13	7.7	4.6	1	23	562	584	562	584	0.98
14	22	0.066	7.7	8.4	0.4	2	23	595	617	594	617	0.94
15	22	0.0025	0.29	12.9	0.3	1	23	639	661	639	661	0.97
16	22	0.012	1.4	10.8	0.2	2	23	742	763	741	763	0.94
17	22	2.1	2.5e+02	3.7	5.9	5	23	773	791	771	791	0.94
18	22	0.17	20	7.1	0.8	2	23	802	824	801	824	0.95
19	22	0.13	15	7.5	2.2	2	23	841	859	841	859	0.89
20	22	0.083	9.7	8.1	1.8	2	21	863	882	863	883	0.94
21	22	0.36	42	6.1	0.9	2	23	931	952	930	952	0.93
22	22	0.012	1.4	10.8	0.5	2	23	963	985	962	985	0.95

Sequence Information

Coding Sequence: ATGTTTGTATCTTGTTATTTCAGACAAAGTACCATCGACGATTCTTCATCAATGCTCTCTGATAATAGTGGCAATGGGCCACTGCAATGTAACTACTGTGACAAgagatttaaatataaaaaatcattaGTGACTCACGAGTTAAAACATTCTGATGCAGAAGTTAAAACAGAACCTGAGGCGTTTCCATCGACGAGTCGCGAACCGGACCGCGCAGAGTACCGCTCCGAGTCGGAGTCGAGCGGCGGGTCGGGCGACGACAACACGTGCGACATCTGCGAGAAGCAGTTCTCGTACAAGAGGCTGCTGGTGCACCACAAGCGCACTAAGCACAATATGAGCTCCGGCACCAAGCGCGCCGCCGTAGCACTCAAGGACTGTCTTGTGCGCTGCCTCATCTGCGACCTGGACATGACCGTCAACGCGGTCAACGAGCATAATCAGAAACATATCCAGCTTAATATGAAGCCGCGGAACTTGTACACGTGCATTGACTGTGGAGAAAAATTTATGAGTCGATCTGTTTTGGCTAATCATATCAAACTAGTGCACAGGCTGAAGCAGATCCAGCCCAAGCAGTTTAAAAGTGCTGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGATCAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCCGAGGAGCAAGCGGGCTCGCTGGCGGTAGATCTAAGCGGGTTCACCTGTACCATATGCGGCAAGACCATGCCCAATCTAATTTCACTCAAAAGACATGTAAATTGGCATTCAAATGTTGGaaataatttggaaaaaaaacttgaatgttTCGTCTGCAAagagtcattCCGATTTCAATGCCACTACAAGTTGCATATGCGTGAACATTATCGCGACACCAATCTTGACCCTAAACTACTCACGTGCTCCATCTGTAATCGGAAAAGCAAGCACTTAAGGGCTGCCCAGGCTCATATGAACTACCACAAACAGACACGGTTCAAGAATAAAGACTACCAGTGTTCCATATGTAAGCGAGTATTCCAATATCGTAAGGTTTACCTGTCCCACATGGCCATCCATTACAAGCGTGGCGAGAGTCAAAACACTATAGTGGGAGACGCGTTACCTAATACAGCTGATAAAACTGTTTTTGATGGCACTCATACGTGTAATCACTGCGGAAAGGTTTGTGATTCGGAAAATTCTTTAAAACACCATATGTCTTGGCATAAATCTAAGTCTTTGCTGTTTGGTGCGCGACACGAGTGTCCAGTTTGCCTTCTAATGTTCACCAATAAGAAACGACAAGAATTACATACAAGAACTCATTATGAAGACGACAACGGTCCTTTCAAATGTACCATATGCGGAAAAGGTTATACGGACGAAAATTATTTCCGGAAGCACGTCAAGGGGCACAACTTTGACCATCAGTCGCACAAGAAGAGAATAGAGAAGCTGAGGAAAGACAAGGTAAAGTGTCCCATATGCGTGCGCTACTATCCCGATTGGGTGAAGCTGATACGGCATCTACGTCGCACGCACCCAGAGAGCAAGATGGTAAAGGCGGACCCTGGCGCGCCGCCACCGCGCGTTTTCACCTGCAAGCTGTGCGCGCGCGTCTGCCGCGACGAGCGCGCGCTGCGCCTGCACGAGGAGGCGCACCTCCGGAAGCCCGCCTTTTTCAAGTGCAAGTTCTGTGGCAAGAAGACGATCTCGCTCAAGAACCACAACCTGCACATCAAGAGCCACCTCACCACTAAGCATGTGGACAACCCGCTGCCCTGCCCGCGCTGCGACCGTCTCTTCGTCAAGGGATACGACTTGCACTACCACCTGCGAGACGAGCATAACATCAACGAGACGTGGATCGCGGACCGCACTGAACAAAGATTGGATGGCCCCCTTAAAGAGTTTCAGTGCTCTATTTGCCTAAAGATACTTGCTAGCAAGGGAAACTATGAGAGACACTTGGATTATCATAATTCTCTCAGATGCAACTACTGCTATGATTATTTTAGTTCTTTGCGGTTCCTGGAAGGCCACCTTACATACAgttgtgacaaaaaaaaattagttggTGGTACAGAAATATATCCAAGAAAGATTAAATGTCACATTTGTTATAAAGCATTCCATTTGCAAGTTAAGTTAGATTGTCACCTAAGCACACAACATGGTATAAGGGTTTTAAAGGAAGCGTCCAAAAGCAAGAAAGACCTTGTATGTGATTACTGCTTCAGAGTTTTTGAAAACATAGACGCTTTATCGACACATAAAATTTACCATCGGACGGTAGGCTACTTTGGATGCATATATTGCAAGAGAAAATTCAACAATTTGACACTTTTtagaaaacataaaaaccatCATTTTGCTCAGTTGAATGTTGATAATCCGACCAAGTGCGAACATTGTGACGACACTTTTGTCCCTTTCAGAGAAATGATATACCATATGAGAGACGTGCACGGTGATAACAAAGAGTGGCTTATAATGCCGAAGGAGTCAATCGAGGAGACCTGTCCCATATGCAACAAAGTGTTCTTCAACTTGCATCGACACTTGGATTACCACGAGGAGAACCGATGCAAGAAGTGCGGCGAGTACTTTTACTCTAGGACTGACTTCGATAATCATCTTTGCGCAATCGAGAGCGATGTAGAACCGGGTACCGTCGACCTTGATATACGTCCGAATTATGAAGAATGTCAGTTTTGCTTCAAACCTATCACTAGAAAGTGTTCCAAGCGAAAGCATGATCATATACACAAAGGATCGGGATCCATTTCTTGTCGATTCTGTTcgcttaaatttaaaacaatggaCGCATTTAACATTCATGCCTTCTCACACCGAAGTCGAAAGTATAAAAAGAATCCATTAAAATGTCGTAAATGTGGCgagaaatttataaaatatgggCCGTTCATAAAGCACCTTAAGGAAGTGCATAAATCGGTTTTAAAAATGCATTATCGGGCTATTGTGAAGGCGGAGCCGTGCGTCGTGTGCGGCGAGCTGTTTCCCAACCTGCACAACCACTACCGCGCGCACCTGCTCCACCGCTGTGCCACCTGCCTCAAGTATTTAACGTCGACGCGCGCCTTCGAGCAGCACGACTGCGCGCGTCCAGACGCCGACCCGGCCAAGGTGTTCGTCTCCGGCGAGAACTTGCCATTGCTCATCCAAACATACGTGCCCAAGGACGAGGAGGACGAGCAGAAGTACTACGGCTACAGCGAAGACGAGGACCACGACGGACCCTCTCCGAGTGGAATGACCAGGGTGCAGGACGACAAGTCCACCGAGAAAGAGCAGGTCGAAACCCAGTGCCCCGTGATATCAGGCGTGCTTTCACTGAGCCACAAGCAGGAGGCACCCGATTGGACCGATGACGTTATCGACCTTGATGACGAAGACGACGACGAAATATCGCCCTCTCTCTCCTTCCCGACTATTATTATCGATGATTAA
Protein Sequence: MFVSCYFRQSTIDDSSSMLSDNSGNGPLQCNYCDKRFKYKKSLVTHELKHSDAEVKTEPEAFPSTSREPDRAEYRSESESSGGSGDDNTCDICEKQFSYKRLLVHHKRTKHNMSSGTKRAAVALKDCLVRCLICDLDMTVNAVNEHNQKHIQLNMKPRNLYTCIDCGEKFMSRSVLANHIKLVHRLKQIQPKQFKSADLADFCEVVVTKAEPLDQIQSHNGFGEVPEEQAGSLAVDLSGFTCTICGKTMPNLISLKRHVNWHSNVGNNLEKKLECFVCKESFRFQCHYKLHMREHYRDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDALPNTADKTVFDGTHTCNHCGKVCDSENSLKHHMSWHKSKSLLFGARHECPVCLLMFTNKKRQELHTRTHYEDDNGPFKCTICGKGYTDENYFRKHVKGHNFDHQSHKKRIEKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKADPGAPPPRVFTCKLCARVCRDERALRLHEEAHLRKPAFFKCKFCGKKTISLKNHNLHIKSHLTTKHVDNPLPCPRCDRLFVKGYDLHYHLRDEHNINETWIADRTEQRLDGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTYSCDKKKLVGGTEIYPRKIKCHICYKAFHLQVKLDCHLSTQHGIRVLKEASKSKKDLVCDYCFRVFENIDALSTHKIYHRTVGYFGCIYCKRKFNNLTLFRKHKNHHFAQLNVDNPTKCEHCDDTFVPFREMIYHMRDVHGDNKEWLIMPKESIEETCPICNKVFFNLHRHLDYHEENRCKKCGEYFYSRTDFDNHLCAIESDVEPGTVDLDIRPNYEECQFCFKPITRKCSKRKHDHIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYKKNPLKCRKCGEKFIKYGPFIKHLKEVHKSVLKMHYRAIVKAEPCVVCGELFPNLHNHYRAHLLHRCATCLKYLTSTRAFEQHDCARPDADPAKVFVSGENLPLLIQTYVPKDEEDEQKYYGYSEDEDHDGPSPSGMTRVQDDKSTEKEQVETQCPVISGVLSLSHKQEAPDWTDDVIDLDDEDDDEISPSLSFPTIIIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325701;
90% Identity: iTF_00010452;
80% Identity: -