Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388200.1:33279803-33285957[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0013 0.1 14.0 5.3 2 23 42 63 41 63 0.97

2 23 0.0013 0.11 14.0 3.7 2 23 114 136 114 136 0.97

3 23 3.6e-05 0.0029 18.9 0.9 1 23 186 209 186 209 0.97

4 23 0.004 0.32 12.5 0.2 1 23 265 287 265 287 0.97

5 23 0.014 1.1 10.8 6.1 2 23 299 320 298 320 0.96

6 23 0.033 2.7 9.5 1.8 2 23 332 353 331 353 0.96

7 23 0.003 0.25 12.8 1.0 1 23 363 385 363 385 0.98

8 23 0.0096 0.78 11.2 8.1 1 23 413 435 413 435 0.97

9 23 0.01 0.84 11.2 4.3 1 23 446 468 446 468 0.98

10 23 9.8e-06 0.0008 20.7 0.8 1 23 476 498 476 498 0.97

11 23 0.0024 0.2 13.1 0.1 2 23 518 540 517 540 0.97

12 23 0.0092 0.74 11.3 1.7 1 23 558 580 558 580 0.96

13 23 0.19 16 7.1 3.7 1 23 587 609 587 609 0.96

14 23 0.024 1.9 10.0 1.1 2 23 620 642 619 642 0.95

15 23 0.0029 0.24 12.9 0.3 1 23 664 686 664 686 0.97

16 23 3.3 2.7e+02 3.2 3.9 2 23 729 751 728 751 0.94

17 23 0.018 1.5 10.4 0.1 2 23 767 788 766 788 0.92

18 23 1.1 90 4.8 4.9 5 23 798 816 795 816 0.94

19 23 0.022 1.7 10.1 1.0 2 23 827 849 826 849 0.95

20 23 0.22 18 7.0 1.4 3 23 867 884 866 884 0.88

21 23 0.059 4.8 8.8 1.6 2 21 888 907 888 908 0.94

22 23 0.99 80 4.9 2.6 2 23 956 977 955 977 0.93

23 23 0.00071 0.057 14.8 0.3 2 23 988 1010 987 1010 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0013	0.1	14.0	5.3	2	23	42	63	41	63	0.97
2	23	0.0013	0.11	14.0	3.7	2	23	114	136	114	136	0.97
3	23	3.6e-05	0.0029	18.9	0.9	1	23	186	209	186	209	0.97
4	23	0.004	0.32	12.5	0.2	1	23	265	287	265	287	0.97
5	23	0.014	1.1	10.8	6.1	2	23	299	320	298	320	0.96
6	23	0.033	2.7	9.5	1.8	2	23	332	353	331	353	0.96
7	23	0.003	0.25	12.8	1.0	1	23	363	385	363	385	0.98
8	23	0.0096	0.78	11.2	8.1	1	23	413	435	413	435	0.97
9	23	0.01	0.84	11.2	4.3	1	23	446	468	446	468	0.98
10	23	9.8e-06	0.0008	20.7	0.8	1	23	476	498	476	498	0.97
11	23	0.0024	0.2	13.1	0.1	2	23	518	540	517	540	0.97
12	23	0.0092	0.74	11.3	1.7	1	23	558	580	558	580	0.96
13	23	0.19	16	7.1	3.7	1	23	587	609	587	609	0.96
14	23	0.024	1.9	10.0	1.1	2	23	620	642	619	642	0.95
15	23	0.0029	0.24	12.9	0.3	1	23	664	686	664	686	0.97
16	23	3.3	2.7e+02	3.2	3.9	2	23	729	751	728	751	0.94
17	23	0.018	1.5	10.4	0.1	2	23	767	788	766	788	0.92
18	23	1.1	90	4.8	4.9	5	23	798	816	795	816	0.94
19	23	0.022	1.7	10.1	1.0	2	23	827	849	826	849	0.95
20	23	0.22	18	7.0	1.4	3	23	867	884	866	884	0.88
21	23	0.059	4.8	8.8	1.6	2	21	888	907	888	908	0.94
22	23	0.99	80	4.9	2.6	2	23	956	977	955	977	0.93
23	23	0.00071	0.057	14.8	0.3	2	23	988	1010	987	1010	0.95

Sequence Information

Coding Sequence: ATGGGGCTGGTACGCAAAAGGTGGCAGCTCATATGTCAGATATATAAAGGATTTCGCAAGCTGCCGAGCACCATTGAAGATTCCTCGTCGATAGTGTCGGACAATAGTGGAAACGGTCCTCTGAAGTGTAAATTTTGCGACAAACATTTCAAATATAAAAAATCGTTAGCAACTCATGAGATGAAACATTTCGAACTTGAAAAAACTGAGCAACATCAAAAACAAGAAAAGGCTGCCAACGAAGAGACAGAAGCGGAAGGGAACGCGTCGAGCAGCCTGTTGCACGAGTCGTACCGCGAGGAGGAGGAAGAGTCGAGCCAGGAGGAGGGCGACGACAACACTTGCGACATCTGCGAGAAGCAGTTCTCGTACCGGCGGCTGCTCGTGCACCACAAGCGCACTAAGCACAACATGAGCTCTGGCACCAAGCGCGCCAGCGTCGTGCTCAAGAACTGCCGCGCGCGCTGTCTCATCTGCGACCTCGAGATGAGCGTCGGCGACATCAACGAACACAACAAGCAGCACATCCAGCAGAACATGAAACCGCGCAATCTTTACACGTGCACGGATTGCGGTGAGCAGTTCAAGAGCTGCAACGCTCTGGCTAACCACATCAAGCTGGTCCACAGGCTCAAGCAGCTGCCGCCCAAGCAGTTCGAAGGTGCTGATCTTGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGAGCAGCAGGAGGGCTCGCCCTTGGTCAATCTCAGTGGATTTAATTGCACCATTTGTGGAAAGAACATGCCCACTCTGATTTCCCTGAAACGGCATGTCAATTGGCATTCTAATGTTGGAAATAATTTAGAAAAAAAGCTAGAGTGCTTTGTTTGCAAAGAGACATTCCGGTTTCAATGTCATTACAAACTACATATGCGCGAGCACTACCGCGACACGAATCTTGATCCAAAACTTCTCACGTGCACCATCTGCAATCGGAAAAGCAAACACTTGAGGGCTGCTCAGGCGCATATGAACTACCACAAACAAACCCGATTCAAGAATAAGGACTATCAGTGCTCCATATGCAAGCGTGTTTTCCAATACCGAAAGGTCTATCTCTCTCACATGGCAATACACTACAAGCGTGGTGAAAGTCAGAACACGATCGTAGGGGACTTATTACCTACCACTGCTGATAAAACCGTTTTTGACGGTACTCATACTTGCTTTCATTGCGGAAAAGTGTGCGACTCTGAGAACTCTCTAAAACATCATATGTCTTGGCACAAATCAAAGACTTTACTGTTTGGCGCGCGACACGAGTGTCCCATTTGCCACGTCATGTTCACTAATAAAAAAAGGCAAGAGCTACACACGCGAACGCATTATGAAGACGAAAACGGTCCATTCAAGTGTACGATATGTGGCAAAGGCTACACCGACGAAGATTACTTCCGTCGGCACGTGAAGGGTCACAACTTCGATCACCAGTCTCACAAAGACCGCATAGCGAAGTTACGAAAGGGCAAGGTGAAGTGTCCTATATGTGTGCGTTACTACCCAGACTTGGTGAAGCTGATCCGGCACCTGCGGCGCACGCACCCCGAGAGCAAGATGGTGAAGCCGGACCCCGACGCGCCCGCGCCGCGGGTGTTCGCGTGCAAGCTGTGCGCCAAGGTGTTCCGCGACGAGCGCCGCCTGCGCCACCACGAGGAGTCGCACCTGCGCAAACCCGAGTTCTTCAAGTGCAAGTTCTGCGGGAAGAAAACTATCTCGCTCAAAAATCATAACCTACACATTAAAGGACATCTCACTTCTAAAAACTTCGACAACCCTCTAAAATGCACTCAGTGTGAAGAGACGTTCATCAAAGGATATGATTTGCATTACCATCTGCGAGATGTGCACGACATTAACGAAACATGGATTGCAGAACGCAAAGAGCAAACGCTAAACGGACCTTTGAAAGAGTTTCAATGCTCAATTTGTCTTAAAATACTTGCAAGTAAAGGCAATTATGAGAGGCACTTGGATTACCACAATTCGCTGAGGTGCAACTACTGCTACGACTATTTCAGTTCACTGAGGTTCCTAGAAGGACATCTGACTTATAGTTGTGATAAAAAGAAGTTAGTTGGTGGTACTGAGATATTTCCGAGGAAGATTAAATGTAATATTTGCTACAAACCATTCCATTTACAAGTCAAATTGGATTGCCATTTGCGCACGCAACATAATATAAAAGTGTCTAAAGAAGCTTCAAAGAGCAAAAAAGACCTTGTTTGTGATTACTGCTTTAGAGTATTCGAAAACCTCGATGCACTGACTGGGCACAAAGTGTATCACCGTACCGTTGGCTACTATGGGTGCATATATTGCAAGAGAAAATTCAACACTTTGACTCTCTTCAGGAAACATAAGAACCACCACTTTGCTCAGTTAAACGTGGATAACCCTACTAAGTGCGAACACTGCAACGAGACGTTTGTCGCTTTCCGAGAAATGATATACCACATGAGGGACGTGCACGGGGACGAAAAGGAGTGGCTTGTGATGCCGAAGGAGTCCATCGAGGAGCCGTGCCCCGTGTGCAACAAGGTGTTCTTCAACCTGCATCGGCACTTGGACTATCACGAGGAGAACCGCTGCAAGAAATGTGGCGAGTACTTCTTCTCGCGCACCGACCTCGACAACCACCTGTGCGCCATCGAGAGCGAGGACGAAGCGGGCAGCGACGAACGCGACGTGCGCCCCAAGTACGAGGAGTGTCGCTTCTGCTTCAAGCCCATCACCAGGAAGAGCTCCAAGGCAAAGCACGACCACATACATAAAGGCTCTGGATCTATCTCTTGTCGATTTTGTTCGCACAAATTTAAAACAATGGATGCATTCAACATTCATGCATTTTCGCATCGCAACCGCAAATACAGAAAAAATCCATTAAAGTGTCGAAAGTGCGGTGAGAAATTTATTCAGTATGGGCCCTTCATAAAGCACATGAGAGGAGTTCACAATTTCGTTCAAAAAATGCACTACCGGGCGACCGTGAAGGCGGAGCCCTGCGCGGTGTGCGGGGACGAGTTCCCCAACCTGCACAACCACTACCGGGCGCATCTGCAGAACCAGTGCCCCTCATGCCTCAAGTACTTCACCTCGACTAAAGTGTTCGCCGAGCACGAGTGCGCCAAGGAAGACTCCGAACCCACCAAGGTGTTCACCAGCGACAAGGACTTGCCCTGGTTGATCAACACCTATGTTCCCAAAGACGAACAGGACGAACAAAAGTATTACGGTTACGGAGATGAGGAGGAGGTCGAGAGCGGTGTGCGGCTGCAGGGCCACATAAAAGACGAGGAAAGTCAGAATTCGAACGAGGACTTCCAACTGCATTGCCCCGTCATATCGGACGTCCTGTCGCTGTGCCAGAAGCAGGAGGCGGTGGAGCGCGCGCCCGCGCCAGAGCCCGTCTACGAGGTCATCGACCTCTCCGACGACGACGTGGGTCTGGTGGATTTCGGCGCCAACTGTCCCACCATCACTATTGATGATTAA
Protein Sequence: MGLVRKRWQLICQIYKGFRKLPSTIEDSSSIVSDNSGNGPLKCKFCDKHFKYKKSLATHEMKHFELEKTEQHQKQEKAANEETEAEGNASSSLLHESYREEEEESSQEEGDDNTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRASVVLKNCRARCLICDLEMSVGDINEHNKQHIQQNMKPRNLYTCTDCGEQFKSCNALANHIKLVHRLKQLPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPEQQEGSPLVNLSGFNCTICGKNMPTLISLKRHVNWHSNVGNNLEKKLECFVCKETFRFQCHYKLHMREHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLLPTTADKTVFDGTHTCFHCGKVCDSENSLKHHMSWHKSKTLLFGARHECPICHVMFTNKKRQELHTRTHYEDENGPFKCTICGKGYTDEDYFRRHVKGHNFDHQSHKDRIAKLRKGKVKCPICVRYYPDLVKLIRHLRRTHPESKMVKPDPDAPAPRVFACKLCAKVFRDERRLRHHEESHLRKPEFFKCKFCGKKTISLKNHNLHIKGHLTSKNFDNPLKCTQCEETFIKGYDLHYHLRDVHDINETWIAERKEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTYSCDKKKLVGGTEIFPRKIKCNICYKPFHLQVKLDCHLRTQHNIKVSKEASKSKKDLVCDYCFRVFENLDALTGHKVYHRTVGYYGCIYCKRKFNTLTLFRKHKNHHFAQLNVDNPTKCEHCNETFVAFREMIYHMRDVHGDEKEWLVMPKESIEEPCPVCNKVFFNLHRHLDYHEENRCKKCGEYFFSRTDLDNHLCAIESEDEAGSDERDVRPKYEECRFCFKPITRKSSKAKHDHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHNFVQKMHYRATVKAEPCAVCGDEFPNLHNHYRAHLQNQCPSCLKYFTSTKVFAEHECAKEDSEPTKVFTSDKDLPWLINTYVPKDEQDEQKYYGYGDEEEVESGVRLQGHIKDEESQNSNEDFQLHCPVISDVLSLCQKQEAVERAPAPEPVYEVIDLSDDDVGLVDFGANCPTITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325701;
90% Identity: iTF_00658714;
80% Identity: -