Cdum001984.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829505.1:19867149-19872665[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00034 0.023 15.8 2.8 2 23 105 126 104 126 0.95 2 24 0.00066 0.046 14.9 3.7 2 23 172 194 172 194 0.97 3 24 0.0036 0.25 12.6 0.2 1 23 244 267 244 267 0.95 4 24 0.0045 0.31 12.3 0.4 1 23 323 345 323 345 0.98 5 24 0.011 0.79 11.0 5.6 2 23 357 378 356 378 0.96 6 24 0.035 2.5 9.5 1.8 2 23 390 411 389 411 0.96 7 24 0.0032 0.22 12.7 1.0 1 23 421 443 421 443 0.98 8 24 0.0098 0.68 11.2 6.4 1 23 471 493 471 493 0.97 9 24 0.001 0.072 14.3 2.6 1 23 504 526 504 526 0.98 10 24 0.00022 0.015 16.4 1.1 1 23 534 556 534 556 0.97 11 24 0.00055 0.038 15.2 0.1 2 23 576 598 575 598 0.97 12 24 0.029 2 9.7 2.1 1 23 616 638 616 638 0.94 13 24 0.14 9.7 7.6 4.6 1 23 645 667 645 667 0.98 14 24 0.051 3.5 9.0 4.5 2 23 678 700 677 700 0.95 15 24 0.0031 0.21 12.8 0.3 1 23 722 744 722 744 0.97 16 24 7.3 5e+02 2.2 6.0 2 23 787 809 786 809 0.94 17 24 0.0053 0.37 12.1 0.2 2 23 825 846 824 846 0.95 18 24 2.9 2e+02 3.5 5.5 5 23 856 874 854 874 0.94 19 24 0.024 1.7 10.0 0.4 2 23 885 907 884 907 0.95 20 24 0.53 37 5.8 2.4 2 23 924 942 924 942 0.89 21 24 0.1 7.2 8.0 1.8 2 21 946 965 946 966 0.94 22 24 1.1 73 4.8 2.6 2 23 1014 1035 1013 1035 0.93 23 24 0.0019 0.13 13.5 0.6 2 23 1046 1068 1045 1068 0.95 24 24 2.9 2e+02 3.5 0.6 2 20 1106 1124 1106 1126 0.92
Sequence Information
- Coding Sequence
- ATGCGTCGCACTGCACCACCGGCAGCGGGAGCCGTGGGCGGGGCAGGATGCCTCGCTggccccaagcgtgccggcagcggtCGCCTTCCGCGCCGCGTTGGTTGTCTAGTAGGTGGCGGCGCCGGCAACGGCCCGCGCTCGTCACTCGATGAGCCGCTGGTGTCCGCGGCAGTCGCAAATTCGTCGCCTGACGATGTCGATGACGAGGACGAGACGGGCGTAGATGGTGGGCGTGCGCTTGCAGTGTCAGGACCGAGTACCATTGAAGATTCCTCATCGATGGTCTCCGATAACAGTGGCAACGGTCCCTTGCAGTGTAACTACTGCGATAAGAGATTTAAGTATCGGAAGTCTTTAGTCAGCCATGAATTTAAACATTCTCAATTGGAAGTGAAAACGGAAGGCGAAGTCATTGCGTCGAGTagcgcggcggcgacggcggccaCGGCGGCGTCGACGGCGGAGACGTACCGCGAGGAGTCCGCTTCCAGCGGCGAAGAGGGCGACGACAACACCTGCGACATCTGCGAGAAACAGTTCTCCTACAAGCGCCTGCTCGCGCACCACAAGCGCACCAAGCACAACATGAGCTCCGGCACTAAACGAGCTCCCATCATCCTCAAAGACTGTCTCGTTAAATGTCTGATATGCGATATCGACATGAAAGTGAGCGAGGTGAACGAGCATAATCGAAAACATATTAAAGCTAATATGAAACCGCGTAATTTGTACACGTGCATTGATTGCGGGGAGAAATTTAAAAGTCGTACGGTTCTGGCCAATCATATCAAACTAGTACACAGGCTCAAACAGCTACCGCCTAAACAATTTGAAGGTGCCGATTTGGCGGATTTTTGTGAGGTCGTTGTGACAAAAGCGGAGCCCCTGGACGAGATTCAGAGTCACAACGGCTTTGGTGAGGTTCCGGACGAGCACGAATACTCTCCATCTATAAATCTGAGTGGTTTCACTTGTACCATTTGCAGCAAGAATATGCCCACTCTCATTTCACTGAAACGACATATAAACTGGCATTCAAATGTTGGAAATCAATTGGAAAAAAAGATTGAATGCTTTGTTTGTAAAGAGacaTTCCGGTTTCAATGTCACTACAAATTGCACATGCGCGAACATTATCGCGATACTAATCTTGACCCCAAACTTCTCACTTGCACAATATGCAACAGAAAAAGCAAGCATTTGAGGGCCGCTCAAGCTCATATGAATTACCACAAACAGACACGTTTTCAGAATAAAGACTACCAGTGTTCCATATGCAAACGCGTCTTTCAATATCGAAAGGTATATCTGTCGCACATGGCGATACACTACAAGCGCGGAGAGAGTCAGAACACTATAGTAGGGGACGCACTACCCAACACCGTGGATAAATCCGTTTTTGATGGAACGCATACTTGCCTTCACTGCGGTAAGGTTTGCGACTCCGAGATTTCATTAAAACATCATATGTCTTGGCACAATTCGAAAACGTTACTGTTTGGTGCACGACACGAGTGCCCGATTTGTAATATCAcatttactaataaaaaaaggcaAGAGTTGCATACAAGAACTCATTACGAAGACGAAAATGGTCCTTTCAAATGCACTATTTGTGGAAAGGGATACAACGACGAGAACTTTTTCCGAAGGCACGTCAAAGGGCACAACTTCGATCATCAGTCTCACAAGAAGAGAATAGAAAAGTTAAGAAAAGATAAAGTAAAATGTCCAATTTGTGTGCGATACTACCCGGACTGGGTAAAGCTGATCCGGCACTTGCGGCGCACGCACCCCGAGAGCAAGATGATCAAGCAGGACCCCGAGGCCCCGCCGCCGCGCACTTTCTCCTGTAAGCTGTGCGCACGCACCTTCCGCGACGAGCGCCGCCTGCGCCACCACGAGGAGGCGCATCTGCGGAAGCCCGAGTTCTTTAAGTGCAAGTTCTGCGGCAAGAAGACCATCTCGCTCAAGAACCACAACCTGCACATCAAGAGCCACCTCACCGCCAAGCACTTCGATAACCCGCTCAAGTGCCACCAGTGCGAGGAACGGTTCGTTAAAGGGTACGACTTGCATCACCATTTACGAGATGTACATGCAATCAATGAGACGTGGATTGCGGATCGCACCGAGCAAACATTGGATGGTCCATTGAAAGAATTTCAATGCTCGATTTGTCTCAAAATACTTGCTAGTAAAGGAAATTATGAGAGACACTTGGACTACCACAATTCTCTAAGATGCAACTACTGCTACGACTATTTTAGTTCACTGAGGTTCTTGGAAGGCCATCTGACTTTCAGCTGTGACAAAAAGAAGTTGGTTGGTGATACTGAAATATATCCACGAAAGATTAAATGCCATATCTGTTATAAAGCATTCCATTTGCAAGTTAAGCTAGACTGTCATCTTCGCACACAACACGGCATAAAAGTTTCCAAGGAAGCCTCCAAGAGCAGGAAAGATCTCGTTTGTGACTATTGTTTCAGAGTTTTTGAAAACATAGACGCTTTGACGACGCATAAAATATATCACCGTACGGTCGGTTATTTCGGATGCATATACTGCAAGAGGAAATTCAACACTTTGACTCTttatagaaaacataaaaaccaTCACTTTGCTCAGTTGAATGTCGATAATCCAACGAAATGTGAACATTGCGACGAGGCTTTCGTCGCTTTCAGAGAAATGATTTATCACATGAGAGATGTTCACGGAGACAACAAAGAGTGGCTTATAATGCCTAAGGCATCGATAGAGGAGACGTGCCCTATCTGCAACAAAGAGTTCTTCAACCTGCACAGGCATTTAGATTATCACGAAACGAACCGATGCAAAAAATGTGGCGAGTACTTCTACTCTCGAACAGACTTCGACAATCACCTATGCGCCATCGAGAGCGACGACGAGGTGAGCTGCGTCGACCTCGGCACGCGGCCGCAGTATGAGGAATGCCGATTTTGCTTCAAACCTATAACTAGAAAGAGCTCCAAGGCGAAACACGATCACATTCACAAAGGCTCTGGATCAATTTCTTGCCGATTCTGCTCGCATAAGTTTAAAACGATGGATGCATTTAACATACATGCATTCTCTCATCGTAGTCGAAAATACAAGACTAATCCGTTGAAATGCCGTAAATGTGGGGAAACATTCATAAAGTATGGGCCATTTATGAAGCATATGAAGGAAGTGCACAAGTCCGTTCAAAAAATGCACTATCGAGCGACTGTGAAGGCAGAGCGTTGCTTGGTGTGTGGAGACGAGTTCCCCAACCTACACAACCACTACCGCGCCCATCTGCAGAACCGCTGCCCGGCTTGCCTCAAGTACTTCACCTCCTCGCGCCTCTTCGCCGAGCACGAGTGCGCCAAGCCCGACGCCGATCCCACGAAAGTCTTCACGTCTGAACACAACTTGTCTTTGCTGATCAACACTTACGTCCCTAAAGACGAAATCGACGAACAAAAACATTATGGTCAATGCCACGAAGATCAAGATGAAACCAATACTCTGCAGGGAATTGCTGACGAGGAGAGTCAAAACTCGAATGAAAACGAAAACTTCCGACTACAGTGTCCCATTATATCTGATGTGCTGTCGCTGTACCAGAAGCAGGAGGCTGGCGGCACCGACGCCGCCGACGCCGCAGACACCGTCGCCGACGAAGTCATTGCGCTGTCGGACGACGAGGTGGACGTGCTAGACAACGACAGCTGCCCCACTATTACGATAGATGATGATTAG
- Protein Sequence
- MRRTAPPAAGAVGGAGCLAGPKRAGSGRLPRRVGCLVGGGAGNGPRSSLDEPLVSAAVANSSPDDVDDEDETGVDGGRALAVSGPSTIEDSSSMVSDNSGNGPLQCNYCDKRFKYRKSLVSHEFKHSQLEVKTEGEVIASSSAAATAATAASTAETYREESASSGEEGDDNTCDICEKQFSYKRLLAHHKRTKHNMSSGTKRAPIILKDCLVKCLICDIDMKVSEVNEHNRKHIKANMKPRNLYTCIDCGEKFKSRTVLANHIKLVHRLKQLPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPDEHEYSPSINLSGFTCTICSKNMPTLISLKRHINWHSNVGNQLEKKIECFVCKETFRFQCHYKLHMREHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDALPNTVDKSVFDGTHTCLHCGKVCDSEISLKHHMSWHNSKTLLFGARHECPICNITFTNKKRQELHTRTHYEDENGPFKCTICGKGYNDENFFRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMIKQDPEAPPPRTFSCKLCARTFRDERRLRHHEEAHLRKPEFFKCKFCGKKTISLKNHNLHIKSHLTAKHFDNPLKCHQCEERFVKGYDLHHHLRDVHAINETWIADRTEQTLDGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLVGDTEIYPRKIKCHICYKAFHLQVKLDCHLRTQHGIKVSKEASKSRKDLVCDYCFRVFENIDALTTHKIYHRTVGYFGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDEAFVAFREMIYHMRDVHGDNKEWLIMPKASIEETCPICNKEFFNLHRHLDYHETNRCKKCGEYFYSRTDFDNHLCAIESDDEVSCVDLGTRPQYEECRFCFKPITRKSSKAKHDHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRSRKYKTNPLKCRKCGETFIKYGPFMKHMKEVHKSVQKMHYRATVKAERCLVCGDEFPNLHNHYRAHLQNRCPACLKYFTSSRLFAEHECAKPDADPTKVFTSEHNLSLLINTYVPKDEIDEQKHYGQCHEDQDETNTLQGIADEESQNSNENENFRLQCPIISDVLSLYQKQEAGGTDAADAADTVADEVIALSDDEVDVLDNDSCPTITIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00325701;
- 90% Identity
- iTF_00325701;
- 80% Identity
- -