Cros027035.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000041.1:763096-777525[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 2.8e-08 34.3 0.0 4 39 170 206 167 210 0.89 2 4 2.6e-12 4.4e-09 36.8 0.1 2 39 222 259 221 262 0.93 3 4 3.8e-15 6.4e-12 45.9 0.1 2 45 277 321 276 321 0.96 4 4 1.6e-18 2.7e-15 56.7 0.0 1 43 328 371 328 373 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGTGGAGTCCTGCAGGTCAAGTGCGAGCCGGCCTCAGACGACGACGAGTCCCAGTTTGCGCACAGCTTCCTCTCAAATCAGATACCGTCTTTGGAACTTCGGGCGGTGAAGCTCGAGCCAGAAATAGACGACAATGCGTCTGCGCGCATCCTGCATCACTTGCAGGGTTCGGAGGAGCTGGAGGAGCTGGCGCCGCCGGCGCCGTCGGGCCCGACCGCCACGCCCGTGTGCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGACGCTGGCGCCCGCGCCGCACTGCGACACCATGGGCGCCACCCTTATCGACAGGCACAAGACACTTCCAGGCGCAAACGATGCCGACTCCATGGATTTCATGCCCCTCCTGGCTGTTAAGGACGAGCCTCTATCAGAAGGAGAGCAACATCACCTGAGCGGGTCGGACACGAGCGACTCGAGCACGCAGCCCGAGCTGACGCGGAGCCCCAAGAACTGGACGCAGCAGGACATGCAGCTGGCGCTAGAGGCGCTGCGGAAACACAACATGAGCCTTACTAAGGCGTCAGCCACGTACGGCATTCCGTCCACGACGCTCTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCGAAGAAGGAGGGCGCCTCCAAGTCCTGGAGCGAGACGGATCTTAGGGGCGCCCTCAACGCGCTCCGCTCGGGCGCTATATCAGCCAACAAGGCCAGCAAGGCGTATGGCATCCCCAGCAGCACCCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCGACGGCGTGGCGCCGCGCCGACCTGGAGCGCGCGCTGGCCGCCATCCGCGCCGGCGCCTGCTCCGtgcagcgcgccgccgcgcagTTCGGGATACCCACGGGTACTCTTTATGGGCGGTGTAAGCGTGAAGGTATCGAACTGTCGCGGTCCAACCCGACGCCGTGGTCTGAAGACGCTATGGGGGAAGCACTGGAAGCTGTCAGAGTTGGCCAGATGTCAATAAATCAAGCAGCGATACATTACAATTTGCCTTACTCTTCTCTATACGGACGGTTCAAGAGATGCAAATATCAAAGTCCTCAAACCCTTCCTCAACAAGCAATGCCAGAGAACATGGAAATGGAGCAACAATCTCAATCCCAAGAGATGTATTACCAGCACCAAAACGTGCCTGTGAGTCAGGGCTTAAATCCTGAACAAGATCTTCAAAATCCTTACCTTCAGCAGAATTACGTGATGAGCGACCCAGGGTTTGAGGCGATGCATAGTAGTATACTGGCTGAGCAAGGATACGGGATGTACTACCAAGGCTGCAGCAGCATTGCCACGAGTTGA
- Protein Sequence
- MPGRGVLQVKCEPASDDDESQFAHSFLSNQIPSLELRAVKLEPEIDDNASARILHHLQGSEELEELAPPAPSGPTATPVCVKQEPAEPAVTLETLAPAPHCDTMGATLIDRHKTLPGANDADSMDFMPLLAVKDEPLSEGEQHHLSGSDTSDSSTQPELTRSPKNWTQQDMQLALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSETDLRGALNALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRAGACSVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQTLPQQAMPENMEMEQQSQSQEMYYQHQNVPVSQGLNPEQDLQNPYLQQNYVMSDPGFEAMHSSILAEQGYGMYYQGCSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00156175; iTF_00342135; iTF_00155228; iTF_00462313; iTF_00021260; iTF_01134710; iTF_01135683;
- 80% Identity
- -