Pcor014067.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421863.1:14371203-14377464[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-11 2.2e-08 34.3 0.0 4 39 170 206 167 210 0.89 2 4 9.3e-12 9.1e-09 35.5 0.2 2 39 222 259 221 262 0.92 3 4 5.2e-15 5.1e-12 45.9 0.1 2 45 277 321 276 321 0.96 4 4 2.3e-18 2.2e-15 56.7 0.0 1 43 328 371 328 373 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGCTTCACGCAGGTCAAATGCGAGCCGGCCTCCGACGACGACGACTCCCAGTTCGCTCACAGCTTCCTCTCAAATCAGATTCCGTCTTTGGAACTTCGGGCGGTGAAGCTCGAGCCGCAAATAGATGACAATGCGTCTGCGCACATGCTGCACCACTTGCAGGGGTCGGGAGAGCTGGAGGAGCTGGGGCCGCCGGCGCCGTCGGGCCCGACCGCCACGCCCGTCTGCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTCACGCTCGAGAcgctggcgcccgcgccgcactgCGACACGCTGGGCGCTACTCTTATCGACAGGCACAAGACGCTACCAGGCGCGAACGATGCCGACTCCATGGATTTCATGCCTCTCCTGGCTGTCAAAGACGAGCCCCTATCAGAAGGAGAGCAACATCACCTAAGCGGGTCCGATACGAGTGACTCGAGTACGCAGCCCGACCTGACGCGGAGCCCTAAGAACTGGACGCAGCAGGACATGCAGCTGGCTCTGGAAGCGCTGCGGAAACACAACATGAGCCTCACTAAGGCATCAGCCACGTACGGCATTCCGTCAACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCTCAAAATCCTGGAGCGAGGCCGACCTAAGGGGAGCTCTCAACGCGCTGCGCTCGGGGGCCATCTCCGCCAACAAGGCCAGCAAGGCTTATGGCATCCCCAGTAGCACCTTGTATAAGATAGCCCGGCGGGAGGGCATCCGGCTGGCTGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTCgagcgcgcgctggccgccaTCCGCGCCGGCGCCTGCTccgtgcagcgcgccgccgcgcagtTCGGGATACCAACTGGTACATTGTATGGCCGATGTAAGCGTGAAGGCATCGAGCTATCCCGGTCCAACCCTACGCCCTGGTCTGAAGACGCCATGGGGGAAGCGTTGGAGGCAGTCAGAGTTGGTCAGATGTCGATAAATCAAGCAGCGATACATTACAATTTGCCTTACTCTTCTCTTTATGGACGATTTAAGAGATGCAAATATCAGAGTCCTCAAGCGTTACCTCAGCAAACAATGGCAGATAACGTGGAAATGGAGGCCCAATCTCAATCCCAAGAGATGTACTATCAGCACCAAAACGTGCCTGTCAGCCAGGGCTTGCATCACCCCGAACAAGAACTACAGAACCCTTACCTTCAGCAGAATTACGTTATGAGCGACCCAGGGTTTGAAGCGATGCACAGTAGTATACTGGCAGATCAGGGCTATGGGATGTATTACCAAGGTTGCAGCAGCATTGCCACGAGTTGA
- Protein Sequence
- MPGRGFTQVKCEPASDDDDSQFAHSFLSNQIPSLELRAVKLEPQIDDNASAHMLHHLQGSGELEELGPPAPSGPTATPVCVKQEPAEPAVTLETLAPAPHCDTLGATLIDRHKTLPGANDADSMDFMPLLAVKDEPLSEGEQHHLSGSDTSDSSTQPDLTRSPKNWTQQDMQLALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALNALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRAGACSVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQALPQQTMADNVEMEAQSQSQEMYYQHQNVPVSQGLHHPEQELQNPYLQQNYVMSDPGFEAMHSSILADQGYGMYYQGCSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00325304;
- 80% Identity
- -