Cpag003861.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000012.1:7526304-7531484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.37 33 5.4 3.0 1 23 1117 1140 1117 1140 0.95 2 12 8.7e-05 0.0078 16.9 5.0 2 23 1301 1322 1301 1322 0.97 3 12 0.00012 0.011 16.4 0.2 3 23 1330 1350 1328 1350 0.98 4 12 1.4e-07 1.2e-05 25.7 3.6 2 23 1357 1378 1356 1378 0.97 5 12 2.4 2.2e+02 2.9 0.1 5 23 1391 1409 1389 1409 0.96 6 12 0.0071 0.64 10.8 3.4 3 23 1416 1437 1414 1437 0.95 7 12 0.13 11 6.9 0.1 2 23 1448 1468 1447 1468 0.96 8 12 6.7e-05 0.006 17.2 0.8 1 19 1474 1492 1474 1493 0.96 9 12 5.3e-05 0.0048 17.5 0.5 1 23 1504 1526 1504 1526 0.99 10 12 0.0002 0.018 15.7 9.0 1 23 1532 1554 1532 1555 0.96 11 12 0.001 0.094 13.5 4.7 1 23 1560 1582 1560 1582 0.98 12 12 0.0013 0.12 13.2 6.0 1 23 1588 1610 1588 1611 0.96
Sequence Information
- Coding Sequence
- ATGGCTGGCAACGTGCAGTGTCCAGTGTGTACATTATTCCTCCTACCCGGTATGGACTTGTCCGACCACTTGGAGACCCATCCAAAGGAGCAAGTCATTAAAGCACTCGTACAAATGAGCCTGAAATCTGAAGTAACCGAAACAGTTACGCCTGATACTCCTAAGAAAGTCAGCTCGACACCATCAATTGAGAATGAGGTCCATCCACGGACAAACGAAGACGAACGAGCCACTCCCATGTCAGTGGCCAGTGAAAGCACGGTGGGAGTAAATGAAAAGCAAAGGGAGTTGGAGGACAATATTAACCTAGCTCCGATACCTCAGAGTATTTCATTGAATAGACAGTGTGGGTATCTGTTTGAGAACaatagcagtagcagtagtagCAGCAGTAGTAGTAATTTCTTTGGACCACCGACTCCATATTACcatcaacatcatcagcatcatcaacaccagcaacagcaacagcaacaacaactccaacagcagcagcagcaacaacaacagtcgcaacagcagcagcagcagcataatttgcaaaattatcattcGTATAACGGACATCCGGGCCAATCGCAGCCTCCAATGCGGCTCTTCTCCTATCAACCGAACCCCAAGCCGTTGCAACCACCACCCGCCTATGGCGCCGCCATAAGTCAACTTCGATCTCAAAATAGCCAAAACCTGATGGTAAGCCACATCAATCGTCCTCAATATTCGCCGGGAAATCACTCATCAATATCATCCCCATCGACATCGTCGCTGTCGGTGGTATCTTCACGTCAACCGCCACCACTACCGCCGCCACCTCTAAACCTGCGTTTTCAGACAAGCTTCCCGCCGATGGAAACACCGCCCTTCACCGACCCATGTGACAGCAATGCAATGTCACCGCGTCGATCATCGATGACACCGCCAATACGACCGCCTCCACAGTTGTACCGTTCGCCGCTTCTATCAGCCGGACAGTACTCACGGCAGTCCAGCTCGCCCTACTCAGTGATGACTGGTTCACCATCTGTGCTGAGATTTGCTGAATCACCGGTTACCGCACACTACCTTGAGCGCGAAAATGGCGACTTTATTGTCCAAGAAACGCCCAAGCATGTGGTCGAGTGTGTGGAAAAAGACGACGGCGAGTTTTCCGTGATCGAACGCGTCTATCACATGCCACCGAGTGTTGTTCAGATAAACGAGGATCAAGACGACGACCTGTCGTCCGACCATGGCTCCAACAGCGAAGACATGAAACTCATGGAAGACGATCTGCCAGGTGGAACGTGGTCTGGTGCACGATCGCCAGAACAGGGTCAAACAGCGTCACAGAAAAAGTCCGGTATCACCGTGCTCAGTGATGTGCAATTAGACCTAAACGAGTACCTAGACCTGATGGGCAACATAATAGCCTCCAGCAAGGTGGCTAAATCTCGTACTGAAATGATAAAGATTGAGAAGTTCGAACCGGAGGAGGTGAAGGAAGAAATGTCGGGCACTATCTGTCTGGACAATGACGACGAGGACAACGAGAATGACATTTCAATGGAAAGTGagcaaaaacaagaagaaaCGAAGGAGGAACAGCAACAGTACAATGACGAGTCGTCATGTTATCCTGTCCCATTAGCCATGGCATGTTCTTCTGGTTGTGTGACGCCGGCATCGTCGATGACGAGTGTTATACGATTGGCGACAAATCCCAGCGCAAGGAGCACTACTCCTTCAACAATCATTATGCAAGTGGATGAGAAAAGCACGAAAGTTGAGGACGCAGCGCCATCGACGAGCAGTGATATGCAAATAACCAAGGTTGAGGAGCCTGTAACAACCTCTGATGCAGTACCCATGGAGGCGGCAAATGACTCCACCACAAATAATGTTGAGGAAGCAACAAGCACTGATACACCCGTTGCCAAAGTTGAGGAAGCAATTGACTCACAATCTCAAATCACCACGGAGAAACCAGAAACCCAGATGCCGGAGAAGCCACCAAAACCCGAGAGGCAGTCGAAGAAAGAGGGAAAGTCGCCAGTTCTTCCGTATTATCAGTCAGTCAGGCGACCCATTAAAAAGACCACCAAGAAGCTTGTCATCAAACCAAGGAGCAAAGACCCAGCACCATCGGCACCAATTCAAATGCAAATAGAACAGCCATCCACCTCGAAGGACGCTCCTTCCGTCGACcatcaaaaagaagaagaagaagtccCCGCCAAGGTGTGCGAAACAACTCAGGATAATGAACTAAATAGCATTAAGACTGAAAGTGTTGCAGTCACCACCTCGGACTCGATTCCTCCGCCGCTTTTTGCTGATGCCGATGAGAAGCTTCCACCCGATGATGAGCTGCTGCCTTGTACATCGCATTCAATCGCCACAGAGGAAGACGCAGCTTCTGCTGCCTTTTCCAATTCTACTTTAGAAGACAAGCCCACCGCCGATCTGACAGCATTCCTTGACCAGTGCATGAAAAAGGAGGAAGAGGCAGAGGATCATCCAATGCATTCTATATTTGGCGCAGAGTGTGTGCCGGAAGAGCCGGAGGCGTTAAACGACGCAATTCCATCGCCAGCATCACCACCCGTATTCCCTTCAGCTTCTTTGTTCTCTAAGCCGTTGACGGCCAGTCCGGAACAACAACTGACTGCATCCGACTCTGTGCTGCTCGATAGCAGTGATGTGCACGAACATGATCCGCCACCGCCGCAGCAAAAGCAAACACAGCCGCAAGCCACTTCCTCGTACGTAGAGTACCCTTTCAGTTTTCTGTACGGCGGCGCCGAGGCAAATCATCAGGACGAGAACAAGCACAATATCTCGCCGCCGATATATTGCAGCGAGGACTTCAACAAGTACAGTGCAAGTACGAGTGGAGGGAACAGCGCCAGCTGTACATGGTATCAGTCGCAAAGCAGTGAAAATGATTTCGAAATGGACGGCAAGGGGAGTTACCTAGATCTGGACTCGTGTAAGCGAAGTGCGTCATTTGCCGCCGCCACAGAGGGAAGTATGCCGACGACAGATACCCTGAACATCAGAACTGACGAGAAGATGCCAGCTAAGGGCGAGATCTCCGAGCAGGAGAGCAATTGTGGCGTGGAGAACTCGTGGAGCCAACCGCTTTACAACGAGTTCCCGGTGCGGTTCCCGATCCCCTATCAGAACTTCATGACGACCCAAGAGAGCTGGAGCCACGATAACTACTTTCGTCCGCAAGACCTCAGCTCATCTGTCGAGACAAAGAAttTTAGTTTGCGGCTAACGGAGGAGTCGCCCATTATGGATACTCTGCCATCGACGTCAAAACGAAAGAACAAGGCCGTGGCCAAGTTGCCGCGCAAGAAAACTTTCCAGTGTGCACATTGCAACACTCATTTCCCGCTGCTGAAGGAGAAGAACGCGCACTTGATCAAACAGCACGGATACAAGCGCGTGAATCGACGTCTTATACGTGACCCACCGACTTCGACTGTTACCACGGCGACAATGAGCACTGACGCTGGTGCCTCCTTGCTGCTTGGTCTCGAACCGAGTGTCCTTCCTCCACCGCTGGCCGAAGAGGACGACTCCAAGGCGGCGATTGTCAAAATCGAACAGGAGAACAAAGAGCTAAAGGATTGCAAGAAAAGCATCTCTAATCTAGCACTGACCAGCAACACAGTGACGACGACTGCCAATGCAAACGTCTCCCGCACGAAGTACGACTCGATGCGAGCACGAGACAACCGAATGctaatcaatttcaatttgaacgCGCTCAACGTCAAGAACGAGGGAAAGGCCGAGGTCGAAACGCACAGCTTCTATCAGGAGTCAAAATCGGCGTTCTTCTGCTTTGTGTGTCGACGGGACTTTCTCACTGTCAAACTGTTCGACGAGCATTTGGTTGAGCATCCCGCCGAGTGTTTCACATGCCACAAGACTTTCACGCGGTGGAAAAACTTCATGGTGCACCTGAAGCGTCACCTCGGCTGGAAGGACTTTGGCTGCACCATCTGCGAGAAGAAGTTCGTAATACGCAGCGCGCTCGTCGAACACATGCGAATGCACACCGGTCACACTCCGCTCAAGTGTAAAATTTGCGGCAAGAGTTTCAAACGCTATTCCAACTTAACGCAGCACCGCAAGCGTCACGGCAACAGAGTCAATCGTACCAAAGAGTACGTCTGCTATTGCGGCGAGGTGCTGCCGTCAAAAGCACGCTTTATCTGGCATAAAGAGACGCACGACTTGAAACCGAAATGCTGCCCCTACTGCCGGGATCGCTTTGTGCACGCAAACAGCCTGCGCCGCCACATCAGACTGGCACACTCGGACAAGTTCGACTACACCGAGCCAATGGAGTGTCCGATGTGCAAGCAAATTTACGCCAAATCCAGCATCAAAGCGCACATGGCCACCCATTCAATGGACACCCAGCACGAGTGTCTGATTTGCAATAAATCCTTCAGCACCAAATGGAATCTGAAAATCCACAATTGGGTGCACGCCAATCGCACCACAAAACCCTTCAAATGCGATCAATGCGTGAAGGCGTTTGTGCGCGAAGTCGACTACAACAACCACATGAACTCGCACAAACAGATCAAGCCATACACGTGCGAGCACTGCGGCTGCAAATTCATACGCAAATACAACTACATACGGCACCGGCGCGAGCATCACGGCAACAAAAAATTCACATGCGATCTCTGCGGCAAACTCTTCCACCGGCACTACTATCTGATCGAACATCGGCGCATCCACACTGGCGAGCGACCATTTCAGTGCACGATATGCGGCAAGAGTTCCACCACCAAGACGAACCACAACAAACACCTGAAGATTCACCACTCGCGGGATCCCTTCACATCGGAGGCGTAA
- Protein Sequence
- MAGNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQMSLKSEVTETVTPDTPKKVSSTPSIENEVHPRTNEDERATPMSVASESTVGVNEKQRELEDNINLAPIPQSISLNRQCGYLFENNSSSSSSSSSSNFFGPPTPYYHQHHQHHQHQQQQQQQQLQQQQQQQQQSQQQQQQHNLQNYHSYNGHPGQSQPPMRLFSYQPNPKPLQPPPAYGAAISQLRSQNSQNLMVSHINRPQYSPGNHSSISSPSTSSLSVVSSRQPPPLPPPPLNLRFQTSFPPMETPPFTDPCDSNAMSPRRSSMTPPIRPPPQLYRSPLLSAGQYSRQSSSPYSVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDDLSSDHGSNSEDMKLMEDDLPGGTWSGARSPEQGQTASQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKSRTEMIKIEKFEPEEVKEEMSGTICLDNDDEDNENDISMESEQKQEETKEEQQQYNDESSCYPVPLAMACSSGCVTPASSMTSVIRLATNPSARSTTPSTIIMQVDEKSTKVEDAAPSTSSDMQITKVEEPVTTSDAVPMEAANDSTTNNVEEATSTDTPVAKVEEAIDSQSQITTEKPETQMPEKPPKPERQSKKEGKSPVLPYYQSVRRPIKKTTKKLVIKPRSKDPAPSAPIQMQIEQPSTSKDAPSVDHQKEEEEVPAKVCETTQDNELNSIKTESVAVTTSDSIPPPLFADADEKLPPDDELLPCTSHSIATEEDAASAAFSNSTLEDKPTADLTAFLDQCMKKEEEAEDHPMHSIFGAECVPEEPEALNDAIPSPASPPVFPSASLFSKPLTASPEQQLTASDSVLLDSSDVHEHDPPPPQQKQTQPQATSSYVEYPFSFLYGGAEANHQDENKHNISPPIYCSEDFNKYSASTSGGNSASCTWYQSQSSENDFEMDGKGSYLDLDSCKRSASFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFPVRFPIPYQNFMTTQESWSHDNYFRPQDLSSSVETKNFSLRLTEESPIMDTLPSTSKRKNKAVAKLPRKKTFQCAHCNTHFPLLKEKNAHLIKQHGYKRVNRRLIRDPPTSTVTTATMSTDAGASLLLGLEPSVLPPPLAEEDDSKAAIVKIEQENKELKDCKKSISNLALTSNTVTTTANANVSRTKYDSMRARDNRMLINFNLNALNVKNEGKAEVETHSFYQESKSAFFCFVCRRDFLTVKLFDEHLVEHPAECFTCHKTFTRWKNFMVHLKRHLGWKDFGCTICEKKFVIRSALVEHMRMHTGHTPLKCKICGKSFKRYSNLTQHRKRHGNRVNRTKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPFKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312935; iTF_00313762; iTF_00316264; iTF_00311300; iTF_00314635; iTF_00315437;
- 90% Identity
- iTF_00311300;
- 80% Identity
- -