Csor014202.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- -
- Assembly
- GCA_948107745.1
- Location
- OX443562.1:100217643-100222811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.23 27 6.1 3.8 1 23 1111 1134 1111 1134 0.95 2 12 9.1e-05 0.011 16.9 5.0 2 23 1295 1316 1295 1316 0.97 3 12 0.00013 0.015 16.4 0.2 3 23 1324 1344 1322 1344 0.98 4 12 1.4e-07 1.7e-05 25.7 3.6 2 23 1351 1372 1350 1372 0.97 5 12 2.5 3e+02 2.9 0.1 5 23 1385 1403 1383 1403 0.96 6 12 0.0074 0.87 10.8 3.4 3 23 1410 1431 1408 1431 0.95 7 12 0.13 16 6.9 0.1 2 23 1442 1462 1441 1462 0.96 8 12 7e-05 0.0082 17.2 0.8 1 19 1468 1486 1468 1487 0.96 9 12 5.6e-05 0.0065 17.5 0.5 1 23 1498 1520 1498 1520 0.99 10 12 0.00021 0.024 15.7 9.0 1 23 1526 1548 1526 1549 0.96 11 12 0.0011 0.13 13.5 4.7 1 23 1554 1576 1554 1576 0.98 12 12 0.0014 0.16 13.2 6.0 1 23 1582 1604 1582 1605 0.96
Sequence Information
- Coding Sequence
- ATGGGTGGCAACGTACAGTGTCCAGTATGTACATTATTCCTCCTTCCCGGTATGGACTTGTCCGACCACCTAGAGACTCATCCAAAGGAGCAAGTCATCAAGGCACTCGTACAAATGAGCCTCAAATCTGAGGTTACCGAGACTGTTACGCCTGATACTCCGAAGAAAGTCAGTTCTACACCATCTGTCGAGAATGACGTCCATCATCGGACAACCGAAGACGAACGAACAACACCCATGTCAGTGGCCAGTGAAAGCACGGTGGGAATAAATGAAAAGCAAAGGGAGTTGGAAGATAATTTTAACCTGACTCCGATACCTCAGAGTCTGTCATTGAATAGACAATGTGGATATTTGTTTgagaacaacaacagcagcagtagTAGTAGCAGTAATAGCAATGTCTTTGGGCCACCGACTCCATATTACCATcaacatcatcagcatcatcaacaccaacaacaacaccagcagcaacagcaacaacagtcgcagcagcagcaacagcatccTTTACAAAATTATCATAGCTATAACGGACATCCGGGGCCGTCGCAGCCTCCAATGCGACTCTTCTCCTATCAACCCAGCCCCAAGCCGTTGCAACCACCACCCGCCTATGGCGCCGCCATAAGTCAACTTCGATCTCAAAATAGCCAAAACCTGATGGTAAGCCACATCAATCGTCCCCAATATTCGCCGGGAAATCACACATCAATATCATCCTCATCGACATCCTCGATGTCGGTGGTATCTTCACGTCTGCCGCCACCACTACCGCCGCCACCTTTAAATCAGCGTTTTCAATCCAGCTTCCCGCAGATGGAAACGCCGCCCTTCACCGATACTTGTGACAACGGCGCAATGTCGCCGCGTCGATCGTCGATGACACCGCCGACACGACCACCTCCCCAGTTGTACCGATCGCCTCTTTCCTCAGCCGGACAGTACTCGCGACAGTCGAGCTCGCCCTACTCCGTGATGACTGGTTCGCCATCTGTGCTGAGATTTGCTGAATCACCGGTGACCGCACACTACCTTGAGCGGGAAAATGGCGACTTTATAGTACAAGAAACGCCCAAACACGTGGTCGAGTGCGTGGAAAAAGACGACGGCGAGTTTTCCGTGATAGAACGCGTCTATCACATGCCACCGAGTGTTGTTCAGATAAATGAGGATCAAGACGATGACTTGTCGTCCGACCATGGATCCAACAGTGAAGACATGAAACTGATGGACGACGATATGCCGGGAGGAACGTGGTCTGGTGCACGATCGCCAGAACAAGGTCAAACATCGACACAAAAAAAGTCGGGCATTACCGTGCTCAGTGATGTTCAATTAGACTTAAACGAGTACCTAGATCTGATGGGCAACATAATAGCCTCCAGCAAGGTGGCTAAGTCTCGTACTGAATTGATAAAAATTGAGAAGTTCGAACCCGAGGAGGTGAAGGAAGAAATGTCGGGCACTATCTGCCTTGACAATGACGAAGAGGAGAACGAGAATGATATTTCGATGGAAAACGagcaaaaactagaagaaacaaAGGAGGAACAGCAACAGTATAATGACGAGTTGTCATGTTATCCTGTTCCTGTGCCAATGGCGTGTTCTTCTGGTTGTGTGACGCCGGCATCGTCGGTGACAAGTGTTATACGATTGGCTACAAATCCCAGCGCCAGGAGCAATACCCCTTCAACAATCATTATGCAGGTGGATGAGAAAAGCACTGACACAAAAGTTGAGGACGCAGCGCCGTCAACGAGCATTGATATAAAAATAACCAAGGTCGAGGAATCTGTAAAGACCTCTGATGTGGTATCCATGGAGGCAAACAACTCCAACACAAACGTTGAGGAAGCAACAAGCACTGATACACCCGTTGCCAAAGTTGAGGAAGCAATGCAGGCGACCTGCCTAGTAGACTCACAATCTCAAACCCCTACGGAGAAGCCCCAGATGCCGGAGAAGCAAGAAAAACCCGAGAAACAATCGAAGAAGGAGGGAAAGTCGCCAATTCTTCCGTATTATCAGTCAGTCAGGCGACCCATTAAAAAGACCCCCAAAAAGCTTGTCATCAAGCCAAGAAGCAAAGACACACCAGCAACAGTACCAAGGCAATTTCAAATGGAAAAGCCATCCACCTCAAAGGACACTCCCTCGGTGGAGCATCAAAAAGAAGAAGTCCACCCCAGCGTGTGCGAAACAACTCAGGAAAATGAACTAAATAGCATTAAGACTGAAAGTCTTAGTGTGACCACCTCGAACTCGACTCCTCCTCCGCTTTTTGCTGATGCCGATGAGAAGCTTCCACCCGATGATGAGTTGCTACCTTGTACATCGAATGCAATCGCCACAGAGGAAGTCGCAGCAGATGCTGCTGCTTTGCCGAGTTCTACTTTAGAAGACAAGCCCACCGCTGATCTGACGGCATTCCTTGACCAGTGCATGAAAAAGGAGGAAGAGGCAGACGAACATCCCATGCACTCTATATTTGGTGCAGAGTGTGTGCCGGAAACGCCGGAGACATTTAACGACCCGATTGAATCCCCAGCATCACCACCTCCTATATTCCCTTCGGCCTCGCTGTTCTCCAAGCCATTGACGGCCAATTCGGAGCAGCTGACTGCAACCGAGTCTGTGCTGCTCGACAGCAGCGATATGCATGAACATAGTCCACCACCACCGCAGCAAAAACAAACACAGCAACAACCCCCTTCCTCGTACGTTGAGTATCCCTTCAGTTTTCTCTATGGCGCCGAGGCTAATCATCAGGACGAGAACAAGCACAACATCTCGCCGCCGATATATTGCAGCGATGACTTCAATAAGTACAGTGCTAGCACGAGTGGGGGGAACAGCGCCAGCTGTACATGGTATCAGTCGCAGAGCAGTGAAAATGATTTCGAAATGGACGGCAAAGGGAGCTACCTAGATCTGGACTCGTGCAAGCGAAGTGCATCATTTGCCGCCGCAACTGAGGGAAGTATGCCGACGACAGATACTCTGAACATAAGAACTGACGAGAAGATGCCAGCGAAGGGGGAGATCTCTGAGCAAGAGAGCAATTGTGGTGTGGAGAACTCATGGAGCCAACCGCTTTACAACGAGTTCCCGGTGCGATTCCCGATTCCCTATCAGAACTTCATGACGACCCAAGAGAGCTGGAGCCACGATAACTACTTTCGTCCGCAAGATCTCAGCTCATCTGTCGAGACAAAGAACTTTAGTTTGCGGCTAACCGAGGAGTCGCCCATTATGGATACTCTGCCATCGACGTCAAAGCGAAAGAACAAGGCCATCGCTAAGTTGCCGCGCAAGAAAACTTTCCAGTGTTCACATTGCAACACTCATTTCCCATTGCTGAAGGAGAAGAACGCGCACTTAATCAAACAGCACGGATACAAGCGTGTGAATCGACGACTTATACGTGACCCACCGACTTCGACTGTTACCACGGCGACAATGAACACTGACGCTGGTGCGTCTTTGCTGCTTGGTCTGGAACCGAGTGCACTACCCCCACCGCTGGCCGAAGAGGAAGACTCCAAAGCTGCAATTGTCAAAATCGAACAAGAGAACAAAGAGCAAAAGGATTGCAAGAAAAGTATCTCTAATCTAGCACTGACCAGCACCACAGTGACGACGACTGCCAATGCAAACGTGTCTCGCACTAAATTCGACTCCATGCGAGCACGAGACAACCGAATGcttatcaatttcaatttgaatgCGCTCAACGTCAAGAACGAGGGAAAGGCGGAAGTCGAAACGCACAGCTACTATCAGGAGTCAAAATCGGCGTTCTTCTGCTTTGTGTGTCGACGGGACTTCCTCACGGTTAAGGTGTTCGACGAGCATTTGGTTGAGCACCCCGCCGAGTGTTTCACATGCCACAAGACGTTCACGAGGTGGAAAAACTTCATGGTCCACCTAAAGCGTCATCTTGGCTGGAAAGACTTTGGCTGCACCATCTGTGAGAAGAAGTTCGTAATACGCAGCGCGCTCGTCGAACACATGCGAATGCACACCGGTCATACTCCCCTCAAGTGTAAGATTTGCGGCAAGagtttcaaacgctattccaaCTTAACGCAGCACCGCAAGCGTCACGGTAACAGAATCAATCGTACCAAAGAGTATGTCTGCTATTGCGGCGAGGTGCTGCCGTCGAAAGCGCGCTTTATCTGGCATAAAGAGACGCACGACTTAAAGCCGAAATGCTGCCCCTACTGCCGGGATCGCTTTGTGCACGCAAACAGCCTGCGCCGCCACATACGACTGGCACACTCCGATAAGTTCGACTACACCGAACCAATGGAGTGTCCGATGTGCAAGCAGATTTACGCCAAATCCAGCATCAAAGCGCACATGGCGACCCATTCAATGGACACCCAGCATGAGTGTCTGATTTGCAATAAATCCTTCAGCACCAAATGGAATCTGAAAATCCACAACTGGGTGCACGCCAATCGCACGACAAAGCCCTTCAAATGCGATCAGTGCGTGAAAGCGTTTGTGCGCGAAGTCGACTACAACAACCACATGAACTCGCACAAACAGATCAAGCCATATACGTGTGAGCACTGCGGCTGCAAATTCATACGCAAATACAACTACATACGACATCGGCGTGAGCATCACGGCAACAAGAAATTCACATGCGATCTCTGTGGCAAACTCTTCCACCGGCACTACTATCTAATCGAACATCGGCGCATCCACACTGGCGAGCGACCATTCCAGTGTACGATATGCGGCAAGAGTTCCACCACTAAGACGAACCACAACAAACACCTGAAGATTCACCACTCGCGGGATCCGTTCACATCGGAGGCGTAA
- Protein Sequence
- MGGNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQMSLKSEVTETVTPDTPKKVSSTPSVENDVHHRTTEDERTTPMSVASESTVGINEKQRELEDNFNLTPIPQSLSLNRQCGYLFENNNSSSSSSSNSNVFGPPTPYYHQHHQHHQHQQQHQQQQQQQSQQQQQHPLQNYHSYNGHPGPSQPPMRLFSYQPSPKPLQPPPAYGAAISQLRSQNSQNLMVSHINRPQYSPGNHTSISSSSTSSMSVVSSRLPPPLPPPPLNQRFQSSFPQMETPPFTDTCDNGAMSPRRSSMTPPTRPPPQLYRSPLSSAGQYSRQSSSPYSVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDDLSSDHGSNSEDMKLMDDDMPGGTWSGARSPEQGQTSTQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKSRTELIKIEKFEPEEVKEEMSGTICLDNDEEENENDISMENEQKLEETKEEQQQYNDELSCYPVPVPMACSSGCVTPASSVTSVIRLATNPSARSNTPSTIIMQVDEKSTDTKVEDAAPSTSIDIKITKVEESVKTSDVVSMEANNSNTNVEEATSTDTPVAKVEEAMQATCLVDSQSQTPTEKPQMPEKQEKPEKQSKKEGKSPILPYYQSVRRPIKKTPKKLVIKPRSKDTPATVPRQFQMEKPSTSKDTPSVEHQKEEVHPSVCETTQENELNSIKTESLSVTTSNSTPPPLFADADEKLPPDDELLPCTSNAIATEEVAADAAALPSSTLEDKPTADLTAFLDQCMKKEEEADEHPMHSIFGAECVPETPETFNDPIESPASPPPIFPSASLFSKPLTANSEQLTATESVLLDSSDMHEHSPPPPQQKQTQQQPPSSYVEYPFSFLYGAEANHQDENKHNISPPIYCSDDFNKYSASTSGGNSASCTWYQSQSSENDFEMDGKGSYLDLDSCKRSASFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFPVRFPIPYQNFMTTQESWSHDNYFRPQDLSSSVETKNFSLRLTEESPIMDTLPSTSKRKNKAIAKLPRKKTFQCSHCNTHFPLLKEKNAHLIKQHGYKRVNRRLIRDPPTSTVTTATMNTDAGASLLLGLEPSALPPPLAEEEDSKAAIVKIEQENKEQKDCKKSISNLALTSTTVTTTANANVSRTKFDSMRARDNRMLINFNLNALNVKNEGKAEVETHSYYQESKSAFFCFVCRRDFLTVKVFDEHLVEHPAECFTCHKTFTRWKNFMVHLKRHLGWKDFGCTICEKKFVIRSALVEHMRMHTGHTPLKCKICGKSFKRYSNLTQHRKRHGNRINRTKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPFKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312092;
- 90% Identity
- iTF_00311300;
- 80% Identity
- -