Curb006072.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- -
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000046.1:2366157-2371212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.24 40 6.2 3.8 1 23 1075 1098 1075 1098 0.95 2 12 9.3e-05 0.016 16.9 5.0 2 23 1259 1280 1259 1280 0.97 3 12 0.00013 0.022 16.4 0.2 3 23 1288 1308 1286 1308 0.98 4 12 1.5e-07 2.5e-05 25.7 3.6 2 23 1315 1336 1314 1336 0.97 5 12 2.6 4.4e+02 2.9 0.1 5 23 1349 1367 1347 1367 0.96 6 12 0.0077 1.3 10.9 3.4 3 23 1374 1395 1372 1395 0.95 7 12 0.14 23 6.9 0.1 2 23 1406 1426 1405 1426 0.96 8 12 7.2e-05 0.012 17.2 0.8 1 19 1432 1450 1432 1451 0.96 9 12 5.7e-05 0.0097 17.6 0.5 1 23 1462 1484 1462 1484 0.99 10 12 0.00021 0.036 15.8 9.0 1 23 1490 1512 1490 1513 0.96 11 12 0.0011 0.19 13.5 4.7 1 23 1518 1540 1518 1540 0.98 12 12 0.0014 0.23 13.2 6.0 1 23 1546 1568 1546 1569 0.96
Sequence Information
- Coding Sequence
- ATGGGTGGCAACGTACAGTGTCCAGTATGTACATTATTCCTCCTTCCCGGTATGGACTTGTCCGATCACTTGGAGACCCATCCAAAGGAGCAAGTCATTAAAGCACTCGTACAAATGAGCCTAAAATCTGAAGTAACAGAGACAGTTACACCTGATATTCCGAAGAAAGTCAGCTCTACACCATCAATCGAGAATGAGGTCCATCATCGGACGACCGAAGACGAACGAGCTACTCCCTTGTCAGTGGACAGTGAGAGCACGGCGGGAGTAAATGAAAAGCAAAGGGAGTTGGACGATAATATTAACCTAGCTTCGATACCTCAGAGTATTTCATTGAACAGACATTGTGGATATATGTTTGAGAACAACAGCAGTAGCAGTAGTAGCAGCAGTAGTAGTAATTTCTTTGGACCACCGACTCCATATTaccatcaacatcatcatcaacaccaacaacagcaacgactccaacagcagcagcagcagcaacagcatcaTTTACAAAATTATCATTCGTATAACGGACATCCGGGCCCATCGCAGCCTCCATTGCGACTCTTCTCCTATCAAGCAAACCCGAAGCCGTTACAACCACCACCCGCCTATGGCGCCGCCATAAGTCAACTTCGATCTCAAAACAGCCAAAACCTGATGGTGAGCCACGTCAATCGTCCCCAATATTCGCCGGGAAATCACACACCAATGTCATCCCCATCGTCGACATCGTCGCTGTCGGTGGTATCTTCCCGTTTGCCGCCACCACTACCACCGCCACCTCTAAACCAGCGTTTTCAGTCCAGCTTCCCGCAGATGGAAACACCGCCCTTCACCGACACATGTGACAGCAGTGCAATGTCGCCGCGTCGATCATCGATGACACCCCCGATACGACCCCCACCACAGTTGTACCGTTCGCCGCTCTCATCAGCCGGACAGTTCTCACGGCAGTCCAGCTCGCCCTATTCGGTGATGACTGGTTCACCATCTGTGCTGAGATTTGCTGAATCACCGGTGACCGCACACTACCTAGAGCGGGAAAATGGCGACTTTATCGTCCAAGAAACGCCCAAGCATGTGGTCGAGTGTGTGGAAAAAGACGACGGCGAGTTTTCCGTGATAGAACGCGTCTATCACATGCCACCGAGTGTTGTTCAAATAAACGAGGATCAAGACGACGAATTGTCGTCCGACCACGCATCCAACAGCGATGACATGAAACTGATGGACGACGATCTGCCAGGTGGAACGTGGTCTGGTGCACGATCGCCCGAACAGGGCCAAATGTCGCCACAGAAAAAGTCAGGCATTACCGTGCTCAGTGATGTGCAATTAGACCTGAACGAGTACCTAGACTTGATGGGCAACATAATAGCCTCCAGCAAGGTGGCTAAATCTCGTACTGAAATGATAAAGATTGAGAAATTCGAACCCGAAGAGGTGAAGGAAGAAATGTCGGGCACAATCGGTCTCAACAACGACGAGGAGGACACGGAGAATGATATTTCAATGGAAAACGAGCAAAAACTAGAAGAAACGAAGGAGGAACACCAGCAGTATAATGACGAATCGTCATGTTATCCTGTCCCATTACCGATGGCGTGTTCTTCTGGTTGTGTGACGCCGGCATCGTCGGTGACAAGTGTTATACGATTGGCGACAAACCCCAGCGCAAGGAGCAATACTCCTGCAACAATCATCATGCAAGTGGATGAAAAATGCACGAAAGTTGAGGAAGCAGTGCCGTCAACGAGCCCCGATATACAAATAACCAAGGTCGAGGCAAATGTAACAACCTTCGATGCAGAAGTTGAGGAAGCAACAAGCACTGATACAACCATTGCCAAAGTTGAGGAAGCAATAGACTCACAATGTCAAACGCCCACGGAGACAATCTCAAAGCCCCAGTTGCCGGAGAAGCCAGAAAAACCCGAAAGGCAATCGAAAAAAGAGGGAAAGTCGCCAATTCTTCCGTATTATCAGTCGGTCAGGCGACCCATTAAAAAGACGCCCAAGAAGCTTGTCATCAAACCAAGAAGCAAGGACACAGCCGCCTCGGCACCAAGGCAAATACAAGTAGAAGAGCCATCCACCTCGAAGGACACTCCTTCCGTGGAGCATCAAAAGAAAGAAGTCCTCCCCAAGGTGTGCGAAACAACTCCGGAAAATGAACTAAGTAGCATTAAGACTGAAAATCTTACAGTCACCACCTCGGACTCGATTCCTCCGCCGCTTTTTGCCAATGCCGATGAGAAGCTTCCACCCGATGATGAGATGCTGCCTTGTTCATCGAATGCAATCGCCACAGGGGAAGAGGCAGCTGATCTGACAGCATTCCTTGACCAGTGCATGAAAAAGGAGGAAGATGTAGAGGATCATCCCATGCATTCTATATTCGGCGCAGAGTGTGTGCCGGAGGAGTCGGTGACATTAAACGGCGCGATCCAATCACCAGCATCACCACCCATATTCCCTTCGGCTTCTTTGTTCTCCAAGCCGTTGACGGCCAGTCCGGAACAACTGACTGCTTCCGAGTCTGTGCTTCTCGATAGCAGTGATATGCATGAACATGATCCCATACCACCGCAACAGAAGCAAACACAGCAACAAACCGCATCCTCGTACGTTGAGTACCCTTTCAGTTTTCTCTACGGCGCCGAGGCTAATCACCAGGACGAGAACAAGCACAACATCTCGCCGCCAATATATTGCAGCGAGGACTTCAACAAGTACAGTGCGAGTACGAGTGGAGGGAACAGCGCCAGCTGTACATGGTATCAGTCGCAAAGCAGTGAAAATGATTTCGAAATGGACGGCAAAGGGAGTTACCTAGATCTGGACTCGTGTAAGCGAAGTGCATCATTTGCCGCCGCAACGGAGGGAAGTATGCCGACAACAGATACCCTAAACATCAGAACTGACGAGAAGATGCCAGCAAAGGGCGAGATCTCCGAGCAAGAGAGCAATTGTGGCGTGGAGAACTCATGGAGCCAACCGCTGTACAACGAGTTCCCGGTGCGGTTCCCGATTCCCTATCAGAACTTCATGACCACCCAAGAGAGCTGGAGCCACGATAACTACTTTCGTCCGCAAGACCTCAGCTCATCTGTCGAAacaaagaaCTTTAGTTTGCGGCTAACCGAGGAGTCCCCCATCATGGATACCCTGCCATCCACGTCAAAGCGAAAGAACAAGACTGTCGCCAAGTTGCTGCGCAAGAAGACTTTCCAGTGTTCACATTGCAACACTCATTTCCCACTGCTGAAGGAGAAGAACGCCCACTTGATCAAACAGCACGGATACAAGCGCGTGAATCGACGTCTTATCCGTGACCCACCGACTTCGACTGTTACCACGGCGACGATGAACACTGAAGCTGGTGCCTCTTTGCTGCTGGGTCTCGAACCGAGTACACTTCCTCCACCGCTGGCCGAAGAGGAGGACTCGAAAGCGGCAATTGTCAAAATCGAACAGGACAACAAAGATCTTAAGGATTGCAAGAAAGGCATCCCTAATCTAGCACTGACCAGCAACACAGTGACGACGACTGCCAACGCAAACGTCTCCCGCACTAAGTACGACTCGATGCGGGCACGAGACAACCGAATGCtaatcaatttcaatttgaatgCGCTCAACGTCAAGAACGAGGGAAAGACCGAGGTCGAAACGCACAGCTACTATCAGGAGTCAAAATCGGCGTTCTTCTGTTTTGTGTGTCGACGGGACTTTCTCACCGTTAAGCTGTTCGACGAGCATTTGATTGAACATCCCGCCGAGTGTTTCACATGCCACAAGACGTTCACGAGGTGGAAAAACTTCATGGTCCATCTGAAGCGTCACCTTGGCTGGAAAGACTTTGGCTGCACCATCTGCGAGAAGAAGTTCGTAATTCGCAGTGCGCTGGTCGAACACATGCGAATGCACACCGGTCATACTCCGCTCAAGTGTAAGATATGCGGCAAGAGTTTCAAACGCTATTCCAACTTAACGCAGCACCGCAAGCGTCACGGTAACAGATTGAAACGTACCAAAGAGTACGTCTGCTATTGCGGCGAGGTGTTGCCGTCGAAAGCACGCTTTATCTGGCATAAAGAAACGCACGACTTGAAACCGAAATGCTGCCCCTACTGTCGGGATCGGTTTGTGCACGCCAACAGCCTGCGCCGCCACATACGACTGGCACACTCCGATAAGTTCGACTACACCGAACCAATGGAGTGTCCGATGTGCAAGCAAATATACGCCAAATCCAGCATCAAAGCCCACATGGCGACCCATTCAATGGACACACAGCATGAGTGTCTGATTTGCAATAAATCCTTCAGCAccaaatggaatttgaaaatcCACAATTGGGTGCACGCCAATCGCACCACAAAACCCTTCAAATGCGATCAATGCGTGAAGGCGTTTGTGCGCGAAGTCGACTACAACAACCACATGAACTCGCACAAACAGATCAAGCCATACACGTGCGAGCACTGCGGCTGCAAATTCATACGCAAATACAACTACATACGACATCGGCGTGAGCATCACGGCAACAAGAAATTCACATGCGATCTCTGCGGCAAACTCTTCCACCGGCACTACTATCTGATCGAACATCGGCGCATCCACACTGGCGAGCGACCATTTCAGTGCACGATATGCGGCAAGAGTTCCACCACCAAGACGAACCACAACAAACACCTGAAGATTCACCACTCGCGGGATCCGTTCACATCGGAGGCGTAA
- Protein Sequence
- MGGNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQMSLKSEVTETVTPDIPKKVSSTPSIENEVHHRTTEDERATPLSVDSESTAGVNEKQRELDDNINLASIPQSISLNRHCGYMFENNSSSSSSSSSSNFFGPPTPYYHQHHHQHQQQQRLQQQQQQQQHHLQNYHSYNGHPGPSQPPLRLFSYQANPKPLQPPPAYGAAISQLRSQNSQNLMVSHVNRPQYSPGNHTPMSSPSSTSSLSVVSSRLPPPLPPPPLNQRFQSSFPQMETPPFTDTCDSSAMSPRRSSMTPPIRPPPQLYRSPLSSAGQFSRQSSSPYSVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDELSSDHASNSDDMKLMDDDLPGGTWSGARSPEQGQMSPQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKSRTEMIKIEKFEPEEVKEEMSGTIGLNNDEEDTENDISMENEQKLEETKEEHQQYNDESSCYPVPLPMACSSGCVTPASSVTSVIRLATNPSARSNTPATIIMQVDEKCTKVEEAVPSTSPDIQITKVEANVTTFDAEVEEATSTDTTIAKVEEAIDSQCQTPTETISKPQLPEKPEKPERQSKKEGKSPILPYYQSVRRPIKKTPKKLVIKPRSKDTAASAPRQIQVEEPSTSKDTPSVEHQKKEVLPKVCETTPENELSSIKTENLTVTTSDSIPPPLFANADEKLPPDDEMLPCSSNAIATGEEAADLTAFLDQCMKKEEDVEDHPMHSIFGAECVPEESVTLNGAIQSPASPPIFPSASLFSKPLTASPEQLTASESVLLDSSDMHEHDPIPPQQKQTQQQTASSYVEYPFSFLYGAEANHQDENKHNISPPIYCSEDFNKYSASTSGGNSASCTWYQSQSSENDFEMDGKGSYLDLDSCKRSASFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFPVRFPIPYQNFMTTQESWSHDNYFRPQDLSSSVETKNFSLRLTEESPIMDTLPSTSKRKNKTVAKLLRKKTFQCSHCNTHFPLLKEKNAHLIKQHGYKRVNRRLIRDPPTSTVTTATMNTEAGASLLLGLEPSTLPPPLAEEEDSKAAIVKIEQDNKDLKDCKKGIPNLALTSNTVTTTANANVSRTKYDSMRARDNRMLINFNLNALNVKNEGKTEVETHSYYQESKSAFFCFVCRRDFLTVKLFDEHLIEHPAECFTCHKTFTRWKNFMVHLKRHLGWKDFGCTICEKKFVIRSALVEHMRMHTGHTPLKCKICGKSFKRYSNLTQHRKRHGNRLKRTKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPFKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312092;
- 90% Identity
- iTF_00311300;
- 80% Identity
- -