Cpag004452.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- Clic
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000013.1:3888403-3893558[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-12 2.7e-09 36.8 0.0 4 42 101 140 98 142 0.87 2 3 1.5 1.4e+03 -0.7 0.0 28 37 172 181 171 186 0.85 3 3 8.6e-10 8e-07 28.9 0.0 5 39 212 246 209 252 0.84
Sequence Information
- Coding Sequence
- ATGCCGCCGGTTTGTCCAAAAGATGGCTCAGCACCCACAAATGATCAGTACATTATATTCGAGCTGAAAACCGATACAGAACCAATGTATAACTATGTGATTACGCAAGTGAAGAAGCCACCGCCCGACGATGGAGATCCCAGTCCGAAGATCTCCGCTCATTCGGTTGAAGATCAAAACGATCGTGGACAACAGTTGAATGCTCCTCAATATGTTATAAGTGTCCAAATACCAGTGGAAGCTGACAAAGAAGAGGCAAAGGAGAACACACCCAAGGCTCGACGTTTTGCTAACCGGAAAAAGTTGGCCGAAGCCTTAGACGCGGTCGTCAATAAGCAGTTCACTATAAGCAAAGCTGCTAGTGTATTTCACGTGACAAAGAGCACCCTCTGGAAGGAGGTGAATAAACACACCAATCATCGGCGAAAAAAGGTCGATCAAGAGCTAAATCAAAAGATCGCTGATCGTATTTGTGCTGGCGAATCTCTTTCAGGCATTTCGAGATCCCTTAAAGTGGCTAAATCCACACTGCATCAGCACAAAGTTCGACTGGCACAGAGTGGCCAGCTGCCATCAAATGTAACCCTCAAACCACCCACCGATCCTTCAGTGAGACTTGCTATGAAGGAACGTATCCTACAAGCTTTTCGCGGTTGCCGTGTAAACGGCATGTCGATACGTTTCGCAGCAAAGTTCTACTCAATACCACCGTCTACGCTATGGAAGCATATCCGACGTTTCAAAGCCTCGCAGCAACATAAAGCAGGCGAATGTGCTACTCACACGGGTGCGGATGAAAACGCCGATGAGATCGAAGACTTGTCAAAAGACCAATCGGTTAGACACGAAAACGCGGAACTTGATGACTTCGATGTGGACGCCTACTGTGAGCAGCAAGAGGAGACGGCCAGTGAAGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACCTTCGAACAGTATGCATCTACAATCGATGGAAGACGTAAGGGAGCGTGCCTTTTTTGCCAAGAATACTTCATGGACTTGTACCTGTTGGCTGAACTGAAAACAATAAGCTTAAAGGTCACCACAGTTGATATGCAGAAACCACCACCAGACTTCCGTACAAACTTTGAGGCAACACATCCGCCGATTTTGATTGACAATGGTCTGGCCATCCTAGAGAATGATAAAATCGAAAGGCACATAATGAAGAACATTCCAGGTGGATATAATCTCTTCGTGCAGGACAAGGAAGTAGCCACACTTATTGAGAATCTATACTCTAAACTGAAGTTGATGTTGGTCaaaaaagatgaaaacaaaaacaacgctTTGTTGTCACATTTGAAGAAGATCAACGATCATTTGGCCACACGTGCAACACGATTCCTAACGGGTGACACTATGTGTTGTTTTGATTGTGAACTGATGCCAAGGTTACAGCACATTCGAGTGGCTGGAAAGTATTTTGTTGATTTCGAAATACCCactcACCTGACACACTTGTGGGGCTACATGTATCATATGTATCAGTTAGATGCCTTCACACAATCCTGCCCGGCTGATCAGGATATTATCAATCACTACAAATTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTGGAGACTCCAACATTCACAACGTCAATTCCGATTGATATCTCGGAATAA
- Protein Sequence
- MPPVCPKDGSAPTNDQYIIFELKTDTEPMYNYVITQVKKPPPDDGDPSPKISAHSVEDQNDRGQQLNAPQYVISVQIPVEADKEEAKENTPKARRFANRKKLAEALDAVVNKQFTISKAASVFHVTKSTLWKEVNKHTNHRRKKVDQELNQKIADRICAGESLSGISRSLKVAKSTLHQHKVRLAQSGQLPSNVTLKPPTDPSVRLAMKERILQAFRGCRVNGMSIRFAAKFYSIPPSTLWKHIRRFKASQQHKAGECATHTGADENADEIEDLSKDQSVRHENAELDDFDVDAYCEQQEETASEDGDFLISFDFETFEQYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLATRATRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTHLWGYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315071; iTF_00313370; iTF_00312509; iTF_00389536;
- 90% Identity
- iTF_00315071; iTF_00312509; iTF_00313370;
- 80% Identity
- -