Cvar017154.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- Clic
- Assembly
- GCA_951230905.1
- Location
- OX579677.1:49069933-49074621[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.9e-12 4.2e-09 36.8 0.0 4 42 109 148 106 150 0.87 2 3 4 2.1e+03 -0.7 0.0 28 37 180 189 179 194 0.85 3 3 2.3e-09 1.2e-06 28.9 0.0 5 39 220 254 217 260 0.84
Sequence Information
- Coding Sequence
- ATGTCCGACACAGATTCGAACCCACCAGTGATGCCGGTTTGTCCGAAAGATGGCTCAGCACCAACAAATGATCAGTACATTATATTCGAGCTGAAAACCGATACAGAACCAATGTACAACTATGTGATAACgcaagtgaagaaaccaccccCCGACGATGGGGATCCCAGTCTGAAGATCAACGCCAATTCGGTTGAAGGTCAAACCGATGGCGATCATTTGAATAATCCTCAGTATGTTATAAGTGTCCAAATACCAGTCGAAGCTGACAAAGAAGAGGCAAAGGAGAACTCACCAAAGAGTCGACGTGCTACTAACCGGAAAAAGCTAGCCGAAGCGTTAGACGCGGTTGTCAATAAGCAGTTCACTATAAGCAAAGCTGCTAGTGTTTTTCACGTGACAAAGAGCACCCTCTGGAAGGAGGTGAATAAACACACCAATCATCGGCGGAAAAAGGTCGATCAAGAGCTAAATCAAAAGATCGCTGATCGTATTTGTGCTGGCGAATCTCTCTCAGGCATTTCGAGATCCCTAAAAGTGGCTAAGTCCACACTGCATCAGCACAAGGTTCGACTGGCACAGAGTGGTCAGCTGCCACCAAATGTGACGCTCAAACCGCCTGCAGATCCATCAGAGAGACTTGCTATGAAGGAACGCATCCTGCAGGCTTTTCGAGGTTGCCGTGTGAACGGCATGTCGATACGTTTCGCCGCCAAGTTCTACTCAATACCACCGTCAACGCTATGGAAGCATATACGACGTTTCAAAGCCTCGCAGCAACATAAGGCAGGCGAAAGTACTACTCACACGGGTGGGGATGAGAACGCCGATGGAATCGAAGACTTCTCCGAAGACCAATCGGTTAGACAAGAAGATGCTGACCTTGTTGACTTCGATGTGGATGCCTACTGTGACCAACAAGAAAAGACGGCCAGCGAAGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACCTTTGAACAGTATGCATCTACAATCGATGGACGACGTAAGGGAGCGTGCCTATTTTGCCAAGAATACTTCATGGACTTGTACCTGTTGGCTGAATTGAAAACAATAAGCTTAAAGGTCACCACAGTTGATATGCAGAAACCACCACCAGACTTCCGTACAAACTTTGAGGCGACACATCCGCCAATTTTGATTGACAATGGCCTGGCTATCCTTGAGAATGATAAAATCGAAAGGCACATAATGAAGAACATTCCCGGTGGATATAATCTCTTCGTGCAGGACAAGGAAGTAGCCACACTAATTGAGAACCTATACTCTAAACTGAAGTTGATGTTGGTCAAAAAAGATGAGAACAAAAACAACGCTTTGTTGTCACATTTAAAGAAGATCAACGATCATTTGGCCACACGTGCAACACGCTTCCTAACAGGTGACACTATGTGTTGTTTTGATTGTGAACTGATGCCAAGGTTACAGCACATTCGAGTGGCTGGAaagtattttgttgattttgaaATACCCaCTCACCTGACACACTTGTGGGGCTACATGTATCATATGTATCAGTTAGATGCCTTCACACAATCCTGCCCGGCTGATCAGGATATTATCAATCACTACAAATTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTGGAGACACCAACATTCACAACGTcaattccgattgatatctcggAATAA
- Protein Sequence
- MSDTDSNPPVMPVCPKDGSAPTNDQYIIFELKTDTEPMYNYVITQVKKPPPDDGDPSLKINANSVEGQTDGDHLNNPQYVISVQIPVEADKEEAKENSPKSRRATNRKKLAEALDAVVNKQFTISKAASVFHVTKSTLWKEVNKHTNHRRKKVDQELNQKIADRICAGESLSGISRSLKVAKSTLHQHKVRLAQSGQLPPNVTLKPPADPSERLAMKERILQAFRGCRVNGMSIRFAAKFYSIPPSTLWKHIRRFKASQQHKAGESTTHTGGDENADGIEDFSEDQSVRQEDADLVDFDVDAYCDQQEKTASEDGDFLISFDFETFEQYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLATRATRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTHLWGYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311729;
- 90% Identity
- iTF_00311729;
- 80% Identity
- -