Cscu018423.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- Clic_1
- Assembly
- GCA_955612985.1
- Location
- OY015313.1:26905543-26915183[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-10 9.4e-08 32.4 0.0 4 42 122 161 119 163 0.87 2 3 2.9 2.1e+03 -0.7 0.0 28 37 193 202 192 207 0.85 3 3 1.3e-09 9.4e-07 29.2 0.0 3 39 231 267 230 273 0.86
Sequence Information
- Coding Sequence
- ATGGACGAAATAAAGAGTGTCGACACAGATTCGAATCCACCATCAACCGAACCGCTGCTGCCAGTGATGCCGGTTTGTCCAAAAGATGGCTCAGCACCAACAAATGATCAATACATTATATTCGAGCTGAAAACCGACACAGAACCAATGTATAACTATGTGATTACGCAAGTGAAGAAACCACCGCCCGACGATGGGGATCCCAGTCCGAAGATCTCTACTCATTCGGTTGAAGATCAAAACGATGGTGGACGACAGTTGAACACTCCTCAGTATGTAATAAGTGTTCAAATACCAGTCGAAGCTGACAAAGAAGAGGCAAAGGAGAACACACCCAAGACTCGACGTGCTGCAAACCGAAAAAAGATAGCCGAAGCCCTAGATGCAGTAATGAATAAACAGTTCACTATAAGCAATGCTGCTAGTGTCTTTCAAGTGACAAAGAGCACCCTCTGGAAGGAGGTGAATAAACACACCAATCATCGTCGAAAAAAAGTCGACCAAGAGCTAAATCAAAAGATCGCAGATCGTATTTGCGCTGGTGAATCTCTCTCGGTAATTTCGAGATCCTTAAAAGTAGCCAAGTCCACACTGCATCAACATAAGGTTCGACTGGCACAGAGCGGACAGCTGCCGTCAAACGTAACGCTCAAACCACCCACTGATCCTTCAGAGAAACTTGCAATGAAGGAACGTATCATACAAGCGTTTCGCGGTTGCCGTGTGAACGGTATGTCGATACGTTTTGCGGCAAAGTTCTACTCAATACCACCGTCAACGCTATGGAAGCATATACGACGTTTTAAAGCCTCGCAGCAACATAAAGCCGCCGAAGGTACTACTCACACGTGTTCGGATGAGAACGTTGAAAGAATCGGAGACGATTTATTAGAACACCAGCCGGTAAGGCACGAAGATGCGGATCTCGATGACTTTGATGTAGACGCCTACTGTGACCAACCAGAGGAGACGACCAGTGAAGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACCTTCGAACAGTATGCATCAACAATCGATGGAAGACGTAAGGGAGCGTGCCTTTTTTGCCAAGAATACTTCATGGACTTGTACTTGTTGGCTGAATTGAAAACAATAAGCTTAAAGGTCACCACAGTTGATATGCAAAAACCACCACCAGATTTCCGTACAAACTTTGAGGCAACACATCCGCCAATTTTGATTGACAATGGTCTGGCCATCCTAGAGAATGATAAAATCGAAAGGCACATAATGAAGAACATCCCCGGTGGATATAATCTCTTCGTTCAGGACAAGGAAGTAGCCACATTAATTGAGAACCTATACTCTAAACTAAAGTTGATGTTGGTTAAGAaagatgaaaacaaaaacaacgcaTTGTTGTCACATTTGAAGAAGATCAACGATCATTTGGCCTCACGTGCAACACGCTTCCTAACGGGTGACACTATGTGTTGTTTTGATTGTGAACTGATGCCAAGGTTACAGCACATTCGAGTGGCTGGAAAGTATTTTGTTGATTTTGAAATACCCACTCACCTTACACACTTGTGGGGCTACATGTATCATATGTATCAGTTAGATGCCTTTACACAATCCTGCCCAGCTGATCAGGATATTATCAATCACTACAAATTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTGGAGACACCAACATTCACAACGTCAATTCCGATTGATATTTCGGAATAA
- Protein Sequence
- MDEIKSVDTDSNPPSTEPLLPVMPVCPKDGSAPTNDQYIIFELKTDTEPMYNYVITQVKKPPPDDGDPSPKISTHSVEDQNDGGRQLNTPQYVISVQIPVEADKEEAKENTPKTRRAANRKKIAEALDAVMNKQFTISNAASVFQVTKSTLWKEVNKHTNHRRKKVDQELNQKIADRICAGESLSVISRSLKVAKSTLHQHKVRLAQSGQLPSNVTLKPPTDPSEKLAMKERIIQAFRGCRVNGMSIRFAAKFYSIPPSTLWKHIRRFKASQQHKAAEGTTHTCSDENVERIGDDLLEHQPVRHEDADLDDFDVDAYCDQPEETTSEDGDFLISFDFETFEQYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLASRATRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTHLWGYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311729;
- 90% Identity
- iTF_00311729;
- 80% Identity
- -