Cran018643.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- Clic
- Assembly
- GCA_951813785.1
- Location
- OX638385.1:34118428-34131075[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.6e-13 1e-09 38.2 0.0 4 42 141 180 138 182 0.93 2 3 3.5 3.7e+03 -2.0 0.0 28 37 212 221 211 223 0.85 3 3 2.9e-10 3.1e-07 30.3 0.0 5 39 252 286 250 292 0.88
Sequence Information
- Coding Sequence
- ATGGAATTTCCATCAAAGTTTCCACTGGCACCGACCCTATTTAATGCGAGCATTAAAATGGGCACCGCCACTCCCAATCGCTATTCCATAGATGACATTAAAAGTGTCGACGTCTATGACACTGAATCCAATTCCGGGCCTGTTCAAACAACCGAGGCCTTTGCTGCTACATCAACTGATCAGTTTATCATTTTCGAACTAAAAAATGAAACGGAACCAATGTACAACTATGTGATAACGCAAGTGAAAAAACCACCACCCGAAGATGGCGATCCTAGCGGAATAATCAACTCTAATCTGACACAGGATCAACATGTTTACGTTCCTTCATATGTAATTAGTGTACAAATACCAGTTGAAAGTAACAAAGAAGAGACTAAAGAGAATTCACCAAAATCTCGACGAGCATCTAAGCGAAAAAGGCTTTTAGAGGCCTTGGATGCTGTAGTCAATAAGGAATTGACTATTAGTAAGGCTGCCAGTGTCTTTCAAGTGACAAAGAGTACCCTCTGGAAGGAGGTTAACAAACGCACAAATCATTGTAGAAAAACGGTCGATCGAGACTTAAATAAGCAAATCACTGATCGAATATGTTCTGGCGAGTCTTTATCAGTCATTTCGAGATCGTTAAAAGTGGCTAAATCCACCTTACATGATCATAAAGTTCAACTAGCACAGCGTGGTCAGCTACCATCACATGTGAAACTTAAACCATCAAAAGATCCATCGGAGAAAATCGCTATGAAGCAGCGTATCATAGAAGCTTTTCGTGGCTGTCGGGTAAATGGTATGTCGATACGTTTAGCGGCAAAATTTTACTCAATACCACCGTCAACGCTCTGGAAGCATATTAGACGTTTTAAAGCCTCTCAACAACAGACAGCAGCTAAAGAAGTTCAACCAATGCCAATTCCTGCAGATACaaagacaaaagaaatcaaagaagatGTTCGAGATAAACAATCAGATAGTAACGAGGAAATGGATTTGGAAGATTTTGATGTGGACGCATATTGTGGACAACCGGGGGAGACCGCCAGCGAAGGTGATGATGAATTTTTGATCAGTTTTGATCTTGACACATTTGAGGAATATGCATCAACAATCGATGGAAGACGTAAAGGGGCGTGCCTATTTTGTCAGGAATATTTCATGGACTTGTACTTGTTGGCTGAATTGAAAACAATAAGCTTAAAGgtCACAACAGTTGATATGCAAAAACCTCCTCCAGATTTCCGTACCAACTTTGAGGCAACACATCCGCCAATTCTAATTGACAATGGTTTGGCCATCCTAGAGAATGATAAAATCGAAAGGCACATCATGAAGAATATCCCTGGTGGATATAATCTCTTCGTGCAGGACAAAGAAGTAGCCACCCTGATTGAGAATTTATATTCTAAACTAAAACTGATGTTGgtcaaaaaggatgaaaacaaaaacaatgcatTATTGTCACATTTGAAAAAGATCAATGATCATCTGACATCACGTGGAACACGCTTTTTAACAGGCGACACAATGTGTTGTTTTGATTGTGAACTAATGCCAAGGCTACAACACATTCGAGTGGCTGGAAAGTATTTCGTTGATTTTGAAATACCCactCACCTGACAGACTTGTGGCGTTACATGTATCATATGTATCAATTAGATGCCTTCACACAATCCTGCCCAGCCGATCAGGATATTATCAATCATTACAAATTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTGGAGACACCAACATTCACAACGTCAATTCCGATTGATATCACGGAATAA
- Protein Sequence
- MEFPSKFPLAPTLFNASIKMGTATPNRYSIDDIKSVDVYDTESNSGPVQTTEAFAATSTDQFIIFELKNETEPMYNYVITQVKKPPPEDGDPSGIINSNLTQDQHVYVPSYVISVQIPVESNKEETKENSPKSRRASKRKRLLEALDAVVNKELTISKAASVFQVTKSTLWKEVNKRTNHCRKTVDRDLNKQITDRICSGESLSVISRSLKVAKSTLHDHKVQLAQRGQLPSHVKLKPSKDPSEKIAMKQRIIEAFRGCRVNGMSIRLAAKFYSIPPSTLWKHIRRFKASQQQTAAKEVQPMPIPADTKTKEIKEDVRDKQSDSNEEMDLEDFDVDAYCGQPGETASEGDDEFLISFDLDTFEEYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLTSRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTDLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDITE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311729;
- 90% Identity
- -
- 80% Identity
- -