Csor020142.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- Clic
- Assembly
- GCA_948107745.1
- Location
- OX443563.1:75906354-75912955[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.2e-09 3.1e-06 27.5 0.0 4 41 122 159 119 163 0.85 2 3 3.4 2e+03 -0.7 0.0 28 37 193 202 192 207 0.85 3 3 1.5e-09 8.9e-07 29.2 0.0 3 39 231 267 230 273 0.86
Sequence Information
- Coding Sequence
- ATGGACGAAATAAAGAGTGTCGACACAGATTCAAATCCACCACCAACCGAACCGCTGCTGCCAGTGATGCCGGTTTGTCCAAAAGATGGCTCAGCACCAACAAATGATCAGTACGTTATATTTGAGCTGAAAACGGACACAGAACCAATGTATAACTATGTGATTACGCAAGTGAAGAAACCACCGCCCGACGATGGGGATCCCAGTCCGAAGATCCCTACCCATTTGGTTGAAGATCAAAACGATGGTGGACGACAGTTGAACGCTCCTCAGTATGTGATAAGTGTCCAAATACCAGTCGAAGCTGACAAAGAAGAGGCAAAGGAGAACACACCCAAGACTCGACGTGCTGCTAACCGAAAAAAGCTAGCCGTAGCCTTAGACGCAGTAATCAATAAGCAGTTCACTATAAGCAATGCTGCTAGCGTCTTTCAAGTGACAAAGAGCACCCTCTGGAAGGAGGTGAATAAACACACCAATCTTCGGCGAAAAAAAGTCGACCAAGAGCTAAATCAAAAGATCGCAGATCGTATTTGCGCTGGCGAATCTCTCTCGGTAATTTCGAGATCCTTAAAAGTGGCTAAGTCCACACTGCATCAACATAAGGTTCGACTGGCACAGAGCGGACAGCTGCCGTCAAACGTAACGCTCAAACCACCCGCTGATCCTTCAGAGAGACTTGCAATGAAGGAACGTATCATACAAGCGTTTCGCGGTTGCCGTGTGAACGGTATGTCGATACGTTTTGCGGCAAAGTTCTACTCAATACCACCGTCAACGCTATGGAAGCATATACGACGTTTTAAAGCCTCACAGCAACATAAAGCAGCCGAAGGTACCACGTGTTCGGATGAGAACGTTGAAAGAATCGAAGACGATTTATTAGAAGACCAGTTGGTAAGGCACGAAGATGCGAATCTCGATGACTTTGATGTAGACGCCTACTGTGACCAACCGGAGGAGACGACCAGTGAAGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACCTTCGAACAGTACTCTGCTGTTACTGGGATTTATGTGGCATCTACAATCGATGGAAGACGTAAGGGAGCGTGCCTTTTTTGCCAAGAATACTTCATGGACTTGTACCTGTTGGCTGAATTGAAAACAATAAGCTTAAAGGTCACCACAGTTGATATGCAGAAACCACCACCAGATTTCCGTACAAACTTTGAGGCAACACATCCGCCAATTTTGATTGACAATGGTCTGGCCATCCTAGAGAATGATAAAATCGAAAGGCACATAATGAAGAACATCCCCGGTGGATATAATCTCTTCGTTCAGGACAAGGAAGTAGCAACATTAATTGAGAATCTATACTCTAAACTAAAGTTGATGTTGGTTAAGAaagatgaaaacaaaaacaacgcaTTGTTGTCACATTTGAAGAAGATCAACGATCATTTGGCCTCACGTGCAACACGCTTCCTAACGGGTGACACCATGTGTTGTTTTGATTGTGAACTGATGCCAAGGTTACAGCACATTCGAGTGGCTGGAAAgtattttgttgattttgaaATACCCacTCACCTTACACACTTGTGGGGCTACATGTATCATATGTATCAGTTAGATGCCTTTACACAATCCTGCCCAGCTGATCAGGATATTATCAATCACTACAAATTGCAACAGATGCTCAAAATGAAgaaacacgaagaactggagaCACCAACATTCACAACGTCAATTCCGATTGATATTTCGGAATAA
- Protein Sequence
- MDEIKSVDTDSNPPPTEPLLPVMPVCPKDGSAPTNDQYVIFELKTDTEPMYNYVITQVKKPPPDDGDPSPKIPTHLVEDQNDGGRQLNAPQYVISVQIPVEADKEEAKENTPKTRRAANRKKLAVALDAVINKQFTISNAASVFQVTKSTLWKEVNKHTNLRRKKVDQELNQKIADRICAGESLSVISRSLKVAKSTLHQHKVRLAQSGQLPSNVTLKPPADPSERLAMKERIIQAFRGCRVNGMSIRFAAKFYSIPPSTLWKHIRRFKASQQHKAAEGTTCSDENVERIEDDLLEDQLVRHEDANLDDFDVDAYCDQPEETTSEDGDFLISFDFETFEQYSAVTGIYVASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLASRATRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTHLWGYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311729;
- 90% Identity
- iTF_00311729;
- 80% Identity
- -