Cgro013999.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720146.1:54125455-54127024[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00066 3.1 8.4 0.3 21 49 51 79 43 82 0.78 2 7 8.8e-05 0.41 11.2 0.2 21 51 79 109 76 111 0.91 3 7 0.00014 0.68 10.5 0.0 21 48 136 163 128 167 0.91 4 7 0.00025 1.2 9.7 0.2 26 48 170 191 165 197 0.87 5 7 0.037 1.8e+02 2.8 0.3 26 48 198 220 190 225 0.89 6 7 0.11 5.1e+02 1.3 0.2 21 45 275 299 269 308 0.80 7 7 1.4 6.7e+03 -2.3 0.1 21 44 303 327 298 331 0.67
Sequence Information
- Coding Sequence
- ATGAGTCAAAGTATCGACGTGAAAAAGTTCGACTCCAAAGAGAACGTGAGTCCCTCCCTGGGCGACAGTGGGGTATCAATGTGTGAGGCATTTTCTGAAAATGAACCAGATGTCAAGGCAGTCATATCGCCGAAGAAGGTACGAAAGAATGCAGCCCGAAACAAGGAATGTCACATTTGTGTGAGAACATTTAAGAATGCCACCGATCTGCGACGCCACCTTCTAATCCATACCAATGAGAAGCCGCACGAATGCGAAATATGCAAGAAATCGTATCGGCAGGAAGTGAATTTGAACAATCACATCATAATGGTGCACACCAACAAGAGAAAGTTCAAGTGTCAGTTCTGCCGAAAGCCATTCGGATTGAAAACACAGCTGAAACATCATTTGCGGATCCATACTGGAGAGAAGCCTTATTCGTGTCCCATTTGTGAAATGAGATTTGCCCAAGCCGGTCAACTTGAAAAGCATATGGATGCTACCCATGGACATCGTGAAAAGAAATGCTGCGAACTTTGTTTTACCAAGTTTAAGAGTGAACGCAATTTGCGGGTACATATGGAACGTCATAAGCAGGGCCCGGTGATTGTTTGTCAGATATGCAGGAAAACATTTAAGAACGACATTATTTTGAGAAGCCATCTGAAAATGAGCCATGGGATGGTTAGGCCTGAGTGTCAAATTTGCGAGCTGATGGTTGAAGGCGATATGCACGATCATATGAAAAATCACTTACCAAAGAAGCCCGTTGAGTGTGAGTTTTGCAGTGCTAGATTTAGCTCCAAGACTCAGTATTCAGTTCACAAGAGGACGCATACAGGGGAGAAACCATATCAGTGCAGGGTTTGCTGGCAAAACTTTGGACATAAAAACGTTCTGATACGGCACGTAAGAAAACACACCGGCGAAAAGCCGTTCCCCTGCGTCCTCTGTAGCTCGACAACTTTTTCTCAGCTGTGCCACTTAAAAACCCATATGAGAACAATTCATTCCAAAGATAAAACTTATGTTTGCGAGGGATGCGACGAGTCCTTCAAAGTTATGTTCCAACTCGAGCGGCACAAAGAATTTTGCGACAAAATCGATCCACCAACGGAGTTTGATGATTTTGAACGGGATAAACGTCGCAGAGATGCCATGTTACTCACGCGTCTCAGATACCTTGTGGCCGTGCTTCTGAAAAAGATATCGAACGAAGAGAAACTCTCTGAACTGGGCTTCGACAAACGACTAATCGACCATGTACTAATTGCCTCGCTAAAAGTAGCAAATCGAAAGTGCTACCAAAGCAAGAAAATGGATGAGCTCGAtcgaatgaaattaaatatacagGAGTTCCTAGAATGGATTGTCCCGGCAAATATATTAGATGTATTCAAAAAGGACTGCGAATCCATTGAGATTATCCTAGATATGATAGTAACAATGAATTTGAAGGAACCGATCATCATATAG
- Protein Sequence
- MSQSIDVKKFDSKENVSPSLGDSGVSMCEAFSENEPDVKAVISPKKVRKNAARNKECHICVRTFKNATDLRRHLLIHTNEKPHECEICKKSYRQEVNLNNHIIMVHTNKRKFKCQFCRKPFGLKTQLKHHLRIHTGEKPYSCPICEMRFAQAGQLEKHMDATHGHREKKCCELCFTKFKSERNLRVHMERHKQGPVIVCQICRKTFKNDIILRSHLKMSHGMVRPECQICELMVEGDMHDHMKNHLPKKPVECEFCSARFSSKTQYSVHKRTHTGEKPYQCRVCWQNFGHKNVLIRHVRKHTGEKPFPCVLCSSTTFSQLCHLKTHMRTIHSKDKTYVCEGCDESFKVMFQLERHKEFCDKIDPPTEFDDFERDKRRRDAMLLTRLRYLVAVLLKKISNEEKLSELGFDKRLIDHVLIASLKVANRKCYQSKKMDELDRMKLNIQEFLEWIVPANILDVFKKDCESIEIILDMIVTMNLKEPIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312052;
- 90% Identity
- iTF_00315594; iTF_00311276; iTF_00314605; iTF_00316239; iTF_00314805; iTF_00316437; iTF_00315419;
- 80% Identity
- iTF_00311276;