Basic Information

Insect: Cheilosia vernalis
Gene Symbol: -
Assembly: GCA_949126925.1
Location: OX421359.1:61560155-61566020[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00055 5.9 7.9 0.1 20 49 50 79 43 82 0.78

2 6 5.4e-05 0.58 11.1 0.2 21 51 79 109 77 111 0.91

3 6 6.6e-05 0.71 10.9 0.1 21 48 136 163 128 168 0.91

4 6 3.6e-05 0.38 11.7 0.2 26 54 170 197 165 197 0.89

5 6 1.5 1.6e+04 -3.0 0.1 27 48 199 220 198 221 0.79

6 6 0.051 5.4e+02 1.6 0.1 21 45 275 299 269 307 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00055	5.9	7.9	0.1	20	49	50	79	43	82	0.78
2	6	5.4e-05	0.58	11.1	0.2	21	51	79	109	77	111	0.91
3	6	6.6e-05	0.71	10.9	0.1	21	48	136	163	128	168	0.91
4	6	3.6e-05	0.38	11.7	0.2	26	54	170	197	165	197	0.89
5	6	1.5	1.6e+04	-3.0	0.1	27	48	199	220	198	221	0.79
6	6	0.051	5.4e+02	1.6	0.1	21	45	275	299	269	307	0.80

Sequence Information

Coding Sequence: ATGAGTCAAAGTAGCGACGTGAAAAAGTTCGACTCGAAAGAGAACGTTAGTCCCTCGCTGGGCGACACTGCGTTATCAATGTGCGAGGCATTTTCTGAAAATGAACCAGACGTCAAGGCGGTGATAACACCGAAGAAGGTAAGAAAGAATGCAGCCCGCAGCAAGGAATGTCACATTTGTGTAAGAACATTTAAGAACGGCACTGATCTGCGACGCCACCTTCTAATCCATACCAATGAGAAGCCGCACGAATGTGAAATATGCAAGAAATCGTATCGGCAGGAAGTGAATTTGAACAATCACATCATAATGGTGCACACCAACAAGAGAAAGTTCAAGTGTCAGTTCTGCCGAAAGCCGTTCGGACTGAAAACCCAGCTGAAACATCATTTGCGGATCCATACTGCGGAGAAGCCCTATTCGTGTCCTATTTGTGAAATGAGATTTGCCCAAGCCGGCCAActtgaaAAGCATATGGATGCTGCCCATGGACATCGGGAGAAGAAATGCTGCGAACTTTGTTTTACCAAGTTTAAGAGTGAACGCAACTTGCGGGTACATATGGAACGTCATAAGCAGGGCCCGGGGATTGTTTGCCAGATATGCAGGAAGAAATTTGAGAACGACATTATTTTGAAAAGCCATCTGAAAGTGAGCCACGGAATGGTTAAGTCTGAGTGTCAAATTTGCGAGCTGAAGGTTGAAGGCGATATGCATGATCATATGAAAACTCATTTGCCGAAGAAGCCCTTTGAGTGTGAGTTTTGTAATGCTAGATTTAGCTCCAAGACGCAGTATGCAGTTCACAAGAGGACGCACACAGGGGAGAAACCATATCAGTGCAGGGTTTGCTGGCAAAGCTTTGGCCATAAAAACGTTCTCATACGGCACGTACGAAAACACACCGGCGAAAAGCCGTTCCCATGCGTCCTCTGCAGCTCGACAACTTTCTCTCAGCTGTGTCACTTAAAAACCCATATGCGAACCATTCATTCCAAAGATAAAACCTATGTTTGCGAAGGATGCAAAGAGTCCTTCAAAGTGATGTTCCAACTCGAGCGGCACAAGGAATTTTGCGACAAAACCGATCCACCAACAGAGTTTGATGATTTTGAACGGGATAAACGTCGTAAAGACGCCATGTTACTCACGCGTCTTAGATACCTTGTGGCAGTGCTTCTGAAAAAGATATCGACCGAAGAGAAACTCTCCGAACTGGGCTTCGACAAACGTCTAATCGACCACGTACTAATTGCCTCGTTGAAAGTAGCAAATCGAAAGTGCTTCCAAAGCAAGAAAATGGATGAGCTCGATcgaatgaaattaaatatacaGGAGTTCCTAGAGTGGATTGTCCCGGCAAATATATTAGATGTATTCAAAAAGGACTGCGAGTCCATTGAGATTATCCTCGATATGATTGTAACGATGAATTTGAAGGAACCGATCATCATATAG
Protein Sequence: MSQSSDVKKFDSKENVSPSLGDTALSMCEAFSENEPDVKAVITPKKVRKNAARSKECHICVRTFKNGTDLRRHLLIHTNEKPHECEICKKSYRQEVNLNNHIIMVHTNKRKFKCQFCRKPFGLKTQLKHHLRIHTAEKPYSCPICEMRFAQAGQLEKHMDAAHGHREKKCCELCFTKFKSERNLRVHMERHKQGPGIVCQICRKKFENDIILKSHLKVSHGMVKSECQICELKVEGDMHDHMKTHLPKKPFECEFCNARFSSKTQYAVHKRTHTGEKPYQCRVCWQSFGHKNVLIRHVRKHTGEKPFPCVLCSSTTFSQLCHLKTHMRTIHSKDKTYVCEGCKESFKVMFQLERHKEFCDKTDPPTEFDDFERDKRRKDAMLLTRLRYLVAVLLKKISTEEKLSELGFDKRLIDHVLIASLKVANRKCFQSKKMDELDRMKLNIQEFLEWIVPANILDVFKKDCESIEIILDMIVTMNLKEPIII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00312052;
90% Identity: iTF_00311460;
80% Identity: iTF_00316239;