Cvar021589.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- -
- Assembly
- GCA_951230905.1
- Location
- OX579678.1:53146529-53148781[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.001 6.5 7.8 0.1 21 49 47 75 39 78 0.78 2 7 8.7e-05 0.56 11.2 0.2 21 51 75 105 72 107 0.91 3 7 0.00016 1.1 10.3 0.0 21 48 132 159 128 164 0.91 4 7 0.00025 1.6 9.7 0.3 26 48 166 187 161 193 0.87 5 7 0.39 2.5e+03 -0.5 0.0 26 48 194 216 189 221 0.88 6 7 0.071 4.6e+02 1.9 0.1 21 45 271 295 263 304 0.80 7 7 0.25 1.6e+03 0.1 0.3 21 49 299 328 292 331 0.77
Sequence Information
- Coding Sequence
- ATGAGTCAAAGTATCGACGTGAAAAAGTTCGACTCCAAAGAGGACGTGAGTCCCTCGCTGGGCGACAGTGGCGTGTCATTTTCTGAAAATGAACCAGATGTCAAGGCAGTCATACCGCCGAAGAAGGTAAGAAAGAATGCAGCCCGAAACAAGGAATGCCACATTTGTGTAAGAACATTCAAAAATGGCACTGATCTGCGACGCCACCTTCTCATCCATACCAATGAGAAGCCGCACGAATGCGAAATATGCAAGAAGTCGTATCGGCAGGAAGTGAATTTGAACAATCACATAATAATGGTGCACACCAACAAGAGAAAGTTCAAGTGTCAGTTCTGCCGAAAGCCATTCGGACTGAAAACACAGCTGAAACATCATTTGCGGATCCATACCGGAGAGAAGCCCTATTCGTGTCCTATTTGTGAAATGAGATTTGCCCAAGCCGGACAACTTGAAAAGCATATGGATGCTGCCCATGGACATCGTGAAAAAAAATGCTGCGAACTTTGTTTCACCAAGTTTAAGAGTGAACGCAATTTGCGGGTACATATGGAACGTCATAAGCAGGGCCCGGTGATTGTTTGCCAGATATGCAGGAAAAAATTTAAGAACGACATTATTTTGAAAAGCCATCTGAAAATAAGCCACGGGATGGTTAGACCTGAATGTCAGATTTGCGAGTTGATGGTTGAAGGGGATATGCACGATCACATGAAAACTCATTTACCGAAGAAGCCCGTTGAGTGTGAGTTTTGTAATGCTAGATTTAGCTCCAAGACTCAGTATACAGTTCACAAGAGGACGCATACAGGAGAGAAGCCATATCAGTGCAGGGTTTGCTGGCAAAGCTTTGGACATAAAAACGTTCTCATACGGCACGTACGGAAACACACCGGCGAGAAGCCGTTCGCATGCGTCCTCTGTAGCTCGACAACTTTCTCTCAGCTGTGTCACTTAAAAACCCATATGAGAACCATTCATTACAAAGATAAAACTTATGTTTGCGAAGGATGCAAGGAGTCCTTCAAAGTTATGTTCCAACTCGAGCGGCACAGAGAATTTTGCGACAAAACCGATCCACCAACGGAGTTTGATGATTTTGAACGCGAAAAACGCCGTAAAGATGCCATGTTACTCACGCGTCTCAGATACCTTGTGGCAGTGCTCCTGAAAAAGATATCCACCGAAGAGAAACTCTCTGACCTGGGCTTCGACAAACGACTAATAGACCATGTGCTCATTGCTTCGCTAAAAGTGGCAAATCGAAAGTGCTACCAGAGCAAGAAAATGGATGAGCTCGAtcgaatgaaattaaatatacaGGAGTTCCTAGAATGGATCGTCCCCGCAAATGTATTAGATGTATTCAAAAAGGACTGCGAGTCCATTGAGATTATCCTAGATATGATAGTCACAATGAATTTGAAGGAACCGATTATCATCTAG
- Protein Sequence
- MSQSIDVKKFDSKEDVSPSLGDSGVSFSENEPDVKAVIPPKKVRKNAARNKECHICVRTFKNGTDLRRHLLIHTNEKPHECEICKKSYRQEVNLNNHIIMVHTNKRKFKCQFCRKPFGLKTQLKHHLRIHTGEKPYSCPICEMRFAQAGQLEKHMDAAHGHREKKCCELCFTKFKSERNLRVHMERHKQGPVIVCQICRKKFKNDIILKSHLKISHGMVRPECQICELMVEGDMHDHMKTHLPKKPVECEFCNARFSSKTQYTVHKRTHTGEKPYQCRVCWQSFGHKNVLIRHVRKHTGEKPFACVLCSSTTFSQLCHLKTHMRTIHYKDKTYVCEGCKESFKVMFQLERHREFCDKTDPPTEFDDFEREKRRKDAMLLTRLRYLVAVLLKKISTEEKLSDLGFDKRLIDHVLIASLKVANRKCYQSKKMDELDRMKLNIQEFLEWIVPANVLDVFKKDCESIEIILDMIVTMNLKEPIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312052;
- 90% Identity
- iTF_00311460;
- 80% Identity
- iTF_00315419;