Curb029289.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- -
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000305.1:356934-359011[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.1e-05 0.012 17.3 1.7 2 23 52 73 51 73 0.97 2 10 2.5e-06 0.00042 21.9 0.6 1 23 79 102 79 102 0.96 3 10 0.00025 0.041 15.6 4.3 1 23 108 130 108 130 0.99 4 10 6e-06 0.001 20.7 0.0 1 23 136 159 136 159 0.94 5 10 0.00039 0.065 15.0 3.9 3 23 167 187 165 187 0.95 6 10 0.011 1.8 10.4 0.6 2 23 194 216 193 216 0.94 7 10 0.00021 0.035 15.8 1.3 2 23 248 269 247 269 0.97 8 10 0.00016 0.027 16.2 1.9 1 23 275 297 275 297 0.99 9 10 0.0093 1.6 10.6 4.6 1 23 303 327 303 327 0.94 10 10 0.00089 0.15 13.8 0.3 1 20 333 352 333 354 0.95
Sequence Information
- Coding Sequence
- ATGAGCCAAAGTATCGACGTGAAAAAGTTCGACTCGAAAGAGAACGTGGGCGACAGTGGCGTATCAATATGCGAGGCATTTTCTGAAAATGAACGAGATGTCAAGGCGGTCATATCGCCGAAGAAGATACGAAAGAATGCAGCCCGCAACAAGGAATGTCACATTTGTGTAAGAACATTTAAGAATGGCACCGATCTGCGACGCCACCTTCTAATCCATACCAATGAGAAACCGCACGAATGCGAAATATGCAAGAAATCGTATCGACAAGAAGTGAATTTGAACAATCACATCATAATGGTGCACACCAACAAGAGAAAGTTCAAGTGTCAGTTCTGTCGAAAGCCATTCGGACTGAAAACACAGCTGAAACATCATTTGCGGATCCATACTGGAGAGAAGCCTTATTCGTGTCCAATTTGTGAAATGAAATTTGCCCAAGCCGGCCAACTTGAAAAGCATATGGATGCTATCCATGGACATCGTGAAAAGAAATgctgcgaactttgttttaccACGTTTAAGAGTGAACGCAACTTGCGGGTACACATGGAACGTCATAATCAGGGTCCGGTGATTACTTGTGAGATATGCAGGAAGAAATTTAAGAACGACATTATTTTGAAAAGTCATCTGAAAATTAGCCATGGGATGGTTAGGCCTGAATGTCAGATTTGCGAGCTGATGGTCGAAGGCGATATGCATGATCACATGAAAACTCATTTACCCAAGAAGCCCGTTGAGTGCGAGTTTTGTAATGCTAGATTTAGCTCCAAGACTCAGTATTCAGTTCACAAGAGGACGCATACGGGAGAGAAACCATATCAGTGCAGGGTTTGCTGGCAAAGCTTTGGACATAAAAACGTTCTCATACGGCACGTACGAAAACACACCGGCGAAAAGCCGTTCCCATGCCTCCTCTGTAGCTCGACAACTTTCTCTCAGCTGTGTCACTTAAAAACCCATATGAGAACCATTCATTACAAAGATAAGACTTATGTTTGCGAAGGATGCAAGGAGTCCTTCAAAGTTATGTTCCAACTCGAGCGGCACAAGGAATTTTGCGACAAAACCGATCCACCAACGGAGTTTGATGATTTTGAGCGCGAAAAACGCCGTAAAGATGCCATGCTACTCACGCGTCTCAGATACCTTGTGGCAGTGCTTCTGAAAAAGATATCCACCGAAGAGAAACTCGCTGAACTGGGCTTCGACAAACGACTAATCGACCATGTACTAATTGCCTCGCTAAAAGTAGCAAATCGAAAGTGCTACCAAAGCAAGAAAATGGATGAGCTCGATcgaatgaaattaaatatacacgAGTTCCTAGAATGGGTTGTCCCGGCAAATATATTAAATGTATTCAAAAAGGACTGCGAGTCCATTGACATTATCCTAGATATGATAGTAACAATGAATTTGAAGGAACCAATCATCATATAG
- Protein Sequence
- MSQSIDVKKFDSKENVGDSGVSICEAFSENERDVKAVISPKKIRKNAARNKECHICVRTFKNGTDLRRHLLIHTNEKPHECEICKKSYRQEVNLNNHIIMVHTNKRKFKCQFCRKPFGLKTQLKHHLRIHTGEKPYSCPICEMKFAQAGQLEKHMDAIHGHREKKCCELCFTTFKSERNLRVHMERHNQGPVITCEICRKKFKNDIILKSHLKISHGMVRPECQICELMVEGDMHDHMKTHLPKKPVECEFCNARFSSKTQYSVHKRTHTGEKPYQCRVCWQSFGHKNVLIRHVRKHTGEKPFPCLLCSSTTFSQLCHLKTHMRTIHYKDKTYVCEGCKESFKVMFQLERHKEFCDKTDPPTEFDDFEREKRRKDAMLLTRLRYLVAVLLKKISTEEKLAELGFDKRLIDHVLIASLKVANRKCYQSKKMDELDRMKLNIHEFLEWVVPANILNVFKKDCESIDIILDMIVTMNLKEPIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312052;
- 90% Identity
- iTF_00311460;
- 80% Identity
- iTF_00314805;